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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072977 ID=TCONS_00072977|Name=TCONS_00072977|organism=Clytia hemisphaerica|type=transcript|length=2082bp
tttcgctttttcaCCGATGTATTATTTTGACTGTGACACTGAACATTGAA
TTCAATATCACTTTCCTCTATTTTTAAGGTAAAAAGAAACAGATAACAAT
GTATAACAGCATTAAGAAATCATGGTTCATTCCACGTGAATACGAAAATA
GAGATATTCCACCTTTGTTATTGGGTAATTTTTCTGTATCAAGCACTTCA
AGCTACTCCAACGAGCATGCGCAAGGGTTCTTCCACACTGGTAAATATTA
TTTGATCCTacaagaagaaaaggaagaaaatatcGTTCACGTGATCAAAT
TCGATATAGAAGAATTCCAATGGGTACACAGTCGAATAATTATCAGCTTA
CCAAAAACTGAACTAGATGGTCACcgagaaaatgttttcaattcaACCAG
TGGTGTATTGGTTCATATCATACAAACATACCCAACAAACGAACGTCATG
AAACTGTAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAG
CTTAATggcaaagatttaaaaattccTGAATCAACTGAACCAGAATCACC
ACCAAGAACACCAACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAA
ATTCACCAGATCTATCTTTTATGGCTAGTATCTTTGAAGATTCGTACAAT
CAAGATTCGAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCC
CTCAGAATCACAAAGTCAAAATCTAAACAGGGAACATGGTTCACCAGAGT
CACTTAAAGCTGATTTAAATAGAGATTTGCAGCATCATGattcaaaaatt
gatgacgaAGCATCCACTCCAGATCTGTCTTTGACATATGATCAATTATT
CAACTCGATAACTTGTAAATATGCAGAATTTCTTGGCCACGAGAATCCCA
CTTTACTTATAAGCAGTTATTTTACTAAGTATTATGAGAGTAACCAGGAC
GAGAAATACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTG
TCACGAGAGAAGATTGGTTATAGATTTCGAAACCGCTGGTGGATCAGTAT
TTGCGAGAAGGGAATATACTaaggacaaaatatttttctttaaaaggtct
tATATTGAAGATAGTGAAGATATGATAAACCTAAAGATCATTGAATGTGA
TTATTCCGGTAATTTCTTATATTCGTATGATTTGGAATACATTGAATCGT
GGATGTTGTTTAATGTTGTTGATCTTAAACATTCAAATTACATATTTCTT
TATAATGGCTATGGCGAATTAGAGGACCTTGAATTAAGAGCTTTAAAACT
GGAGAATGGGGTTCGTTTGTCaataaatgaaacaaaaaacttCATTCTCT
CTGTGAAGGTACCAGTAGAATATAGAGGAAGGGACTTCAGAGTGCGTGCC
CCTATCAAGAAGTTCGATCGCCTTGTTATGCCACTTTACTGTGCCACAAA
GGATGTATTTCACCCTGAATTTTACATGGCAATTGATTTATCTACTATAG
AAGTTGTTCACCAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCT
GTAAATTGGAACAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCT
TCAAAATGCTACGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAATA
ATATTGAAAGGAAAGAAGAAAtgaaatctttgaaatattTGGCAAGATTT
GCTGTTTTAACATCGTTTACTTATAATGAATTATTTAAAGCAAATCTTCC
ATCTTCCTTATTTAATTATTTGGGGATTGAAAACTAGTTGCTTACTGAAT
ACAAATACATTTTCCactaatatttgaaaaacatttgaaaaatggagGAA
AAACAATAAggaaattcatcaaaatcacCTAATATGAAGCGAACATTATT
AATATTGATAGTTTTGTATCCTTCCCGTTAAAAAATTTATATCTaggcaa
aaatataaaaatgtagtgtttcacgaaaccggccgggtgaaaaaaaaaaa
attctgacccggccgcagactatgggttcatctatatggttcatcGTAAA
GAAAATCAATCTGACCGTTCAAACTATCAAAC Run BLAST on NCBI transcript from alignment at scaffold_86:1396054..1398135+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072977 ID=TCONS_00072977|Name=TCONS_00072977|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_86:1396054..1398135+ (Clytia hemisphaerica)
tttcgctttttcaCCGATGTATTATTTTGACTGTGACACTGAACATTGAA
TTCAATATCACTTTCCTCTATTTTTAAGGTAAAAAGAAACAGATAACAAT
GTATAACAGCATTAAGAAATCATGGTTCATTCCACGTGAATACGAAAATA
GAGATATTCCACCTTTGTTATTGGGTAATTTTTCTGTATCAAGCACTTCA
AGCTACTCCAACGAGCATGCGCAAGGGTTCTTCCACACTGGTAAATATTA
TTTGATCCTacaagaagaaaaggaagaaaatatcGTTCACGTGATCAAAT
TCGATATAGAAGAATTCCAATGGGTACACAGTCGAATAATTATCAGCTTA
CCAAAAACTGAACTAGATGGTCACcgagaaaatgttttcaattcaACCAG
TGGTGTATTGGTTCATATCATACAAACATACCCAACAAACGAACGTCATG
AAACTGTAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAG
CTTAATggcaaagatttaaaaattccTGAATCAACTGAACCAGAATCACC
ACCAAGAACACCAACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAA
ATTCACCAGATCTATCTTTTATGGCTAGTATCTTTGAAGATTCGTACAAT
CAAGATTCGAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCC
CTCAGAATCACAAAGTCAAAATCTAAACAGGGAACATGGTTCACCAGAGT
CACTTAAAGCTGATTTAAATAGAGATTTGCAGCATCATGattcaaaaatt
gatgacgaAGCATCCACTCCAGATCTGTCTTTGACATATGATCAATTATT
CAACTCGATAACTTGTAAATATGCAGAATTTCTTGGCCACGAGAATCCCA
CTTTACTTATAAGCAGTTATTTTACTAAGTATTATGAGAGTAACCAGGAC
GAGAAATACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTG
TCACGAGAGAAGATTGGTTATAGATTTCGAAACCGCTGGTGGATCAGTAT
TTGCGAGAAGGGAATATACTaaggacaaaatatttttctttaaaaggtct
tATATTGAAGATAGTGAAGATATGATAAACCTAAAGATCATTGAATGTGA
TTATTCCGGTAATTTCTTATATTCGTATGATTTGGAATACATTGAATCGT
GGATGTTGTTTAATGTTGTTGATCTTAAACATTCAAATTACATATTTCTT
TATAATGGCTATGGCGAATTAGAGGACCTTGAATTAAGAGCTTTAAAACT
GGAGAATGGGGTTCGTTTGTCaataaatgaaacaaaaaacttCATTCTCT
CTGTGAAGGTACCAGTAGAATATAGAGGAAGGGACTTCAGAGTGCGTGCC
CCTATCAAGAAGTTCGATCGCCTTGTTATGCCACTTTACTGTGCCACAAA
GGATGTATTTCACCCTGAATTTTACATGGCAATTGATTTATCTACTATAG
AAGTTGTTCACCAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCT
GTAAATTGGAACAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCT
TCAAAATGCTACGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAATA
ATATTGAAAGGAAAGAAGAAAtgaaatctttgaaatattTGGCAAGATTT
GCTGTTTTAACATCGTTTACTTATAATGAATTATTTAAAGCAAATCTTCC
ATCTTCCTTATTTAATTATTTGGGGATTGAAAACTAGTTGCTTACTGAAT
ACAAATACATTTTCCactaatatttgaaaaacatttgaaaaatggagGAA
AAACAATAAggaaattcatcaaaatcacCTAATATGAAGCGAACATTATT
AATATTGATAGTTTTGTATCCTTCCCGTTAAAAAATTTATATCTaggcaa
aaatataaaaatgtagtgtttcacgaaaccggccgggtgaaaaaaaaaaa
attctgacccggccgcagactatgggttcatctatatggttcatcGTAAA
GAAAATCAATCTGACCGTTCAAACTATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072977-exon-scaffold_86-1491911889:1396054..1398135 | TCONS_00072977-exon-scaffold_86-1491911889:1396054..1398135 | Clytia hemisphaerica | exon |
| TCONS_00072977-exon-scaffold_86-1510915933:1396054..1398135 | TCONS_00072977-exon-scaffold_86-1510915933:1396054..1398135 | Clytia hemisphaerica | exon |
| TCONS_00072977-exon-scaffold_86-1575043694:1396054..1398135 | TCONS_00072977-exon-scaffold_86-1575043694:1396054..1398135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1396054..1398135 + |
Blast
The following BLAST results are available for this feature:
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