TCONS_00072968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072968
Unique NameTCONS_00072968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072968 ID=TCONS_00072968|Name=TCONS_00072968|organism=Clytia hemisphaerica|type=transcript|length=1476bp
CGATGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCC
AAGGATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGA
GATGGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAA
AAAAAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttat
tctaaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGG
ATATTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttc
ttcataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGAC
CTTTATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACAT
TGAATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTG
CCAGTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAAC
AATATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGC
TAACGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAA
ACATCGAGCTACATCaaataaagcaagaaaaaagaCTGGTAATAGAATTA
GACAGACCGttggaaaattcttttgtttttcgatATTTTACCAAGCATAA
GATCTATTTTGAAAGGATCGATAACAAACACAATACCATTAAGTCAACAA
TCTTAGAATATGATTACTCGGGTAAATTTTTATATTCATATTCCATTGAT
TATTCCGATTCATTTGTAAAGCATTTCGAATGTATTAGAAATTCAAactt
aatatttttatatttttaccccAGAAAAACTAAACCTGAGGATCTTGAAA
TACGAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTGTTAAAGaagtt
aaaaatattatatttccgAAAGAGGACGGAGTTATGTACAAATCAGTCGC
ATTAAATGATCCAATTAAAAGATTCAATCATACTGTATTACCAGCTTTAT
TAAGGGACGATGTCCACGGGGTATATATGACTCTGGATTTAACAAACATG
AAAATTACACGTAAGTCTCAAAGACAAATTATGACTGAAGATGACGATAT
TCAGGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGCAATGATTTCTT
TAAACGATGAGGAATTCGTATTTCAAATTGCACGCAATGATACTGTTGAA
GGGAACGGTAGtgtaaaatctttgaaacATTTGGCAAGATTTGCTGTTTT
GACATCGTTGAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT
TGTTTGActatttgggaattgaaaaatgaaaattgtaagTTTACAAGAAg
gataatttattgaaaatttgacaaattgaaagttttgacaTCGTTCAATT
ATCATCAATTGATGGAAGCGAAtttg
Run BLAST on NCBI

transcript from alignment at scaffold_86:1391773..1400249+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072968 ID=TCONS_00072968|Name=TCONS_00072968|organism=Clytia hemisphaerica|type=transcript|length=8477bp|location=Sequence derived from alignment at scaffold_86:1391773..1400249+ (Clytia hemisphaerica)
CGATGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCC AAGGATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGA GATGGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAA AAAAAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttat tctaaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGG ATATTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttc ttcataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGAC CTTTATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACAT TGAATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTG CCAGTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAAC AATATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGC TAACGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAA ACATCGAGCTACATCaaataaagcaagaaaaaagaCTGGTAATAGAATTA GACAGACCGttggaaaattcttttgtttttcgatATTTTACCAAGCATAA GATCTATTTTGAAAGGATCGATAACAAACACAATACCATTAAGTCAACAA TCTTAGAATATGATTACTCGGGTAAATTTTTATATTCATATTCCATTGAT TATTCCGATTCATTTGTAAAGCATTTCGAATGTATTAGAAATTCAAactt aatatttttatatttttaccccAGAAAAACTAAACCTGAGGATCTTGAAA TACGAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTGTTAAAGaagtt aaaaatattatatttccgAAAGAGGACGGAGTTATGTACAAATCAGTCGC ATTAAATGATCCAATTAAAAGATTCAATCATACTGTATTACCAGCTTTAT TAAGGGACGATGTCCACGGGGTATATATGACTCTGGATTTAACAAACATG AAAATTACACGTAAGTCTCAAAGACAAATTATGACTGAAGATGACGATAT TCAGGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGCAATGATTTCTT TAAACGATGAGGAATTCGTATTTCAAATTGCACGCAATGATACTGTTGAA GGGAACGGTAGtgtaaaatctttgaaacatTTGGCAAGATTTGCTGTTTT GACATCGTTCAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT TGTTTGACTATTTGGgcatagaaaaatgaaaatcgtAAGATTACACGAAg gataatttattgaaaaatttgacaaattgaaagttttgacaTGGTTCAAT TATCATCAATTAATGGAAGCAAATTTGCCATCGATATTGTTTGActattt gggaattgaaaaatgaaaattgtaagTTTACAAGAAggataatttattga aaaatttgacaaaNCAAATCTTTGAAACATTTGGCAAGATTTGCTGTTTT GACATCGTTGAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT TGTTTGActatttgggaattgaaaaatgaaaattgtaagTTTACAAGAAg gataatttattgaaaatttgacaaattgaaagttttgacaTCGTTCAATT ATCATCAATTAATGGAAGCGAATTTGCCATCGATATTGTTTGActatttg ggaattgaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaa attttaacaaattgaaagttttgacaTCGCTCAATTATCATCAATTGATG GAAGCGGATTTACCATCGATATTGTTTGActatttgggaattgaaaatga aaattgtaagTTTACAAGAAggataatttattgaaaattttaacaaattg aaagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTACC ATCGATATTGTTTGActatttgggaattgaaaatgaaaattgtaagTTTA CAAGAAggataatttattgaaaattttaacaaattgaaagttttgacaTC GCTCAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTG ActatttgggaattgaaaatgaaaattgtaagTTTACAAGAAggataatt tattgaaaattttaacaaattgaaagttttgacaTCGCTCAATTATCATC AATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatttgggaatt gaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaatttta acaaattgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCG GATTTACCATCGATATTGTTTGActatttgggaattgaaaatgaaaattg taagTTTACAAGAAggataatttattgaaaattttaacaaattgaaagtt ttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTACCATCGAT ATTGTTTGActatttgggaattgaaaatgaaaattgtaagTTTACAAGAA ggataatttattgaaaattttaacaaattgaaagttttgacaTCGCTCAA TTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatt tgggaattgaaaatgaaaattgtaagTTTACAAGAAggataatttattga aaattttaacaaattgaaagttttgacaTCGCTCAATTATCATCAATTGA TGGAAGCGGATTTACCATCGATATTGTTTGActatttgggaattgaaaat gaaaattgtaagTTTACAAGAAggataatttattgaaaattttaacaaat tgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTA CCATCGATATTGTTTGActatttgggaattgaaaatgaaaattgtaagTT TACAAGAAggataatttattgaaaattttaacaaattgaaagttttgaca TCGCTCAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTT TGActatttgggaattgaaaatgaaaattgtaagTTTACAAGAAggataa tttattgaaaattttaacaaattgaaagttttgacaTCGCTCAATTATCA TCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatttgggaa ttgaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaattt taacaaattgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAAG CGGATTTACCATCGATATTGTTTGActatttgggaattgaaaatgaaaat tgtaagTTTACAAGAAggataatttattgaaaattttaacaaattgaaag ttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTGCCATCG ATATTGTTTGACtatttggaaattgaaaaatgaaaattgtaagTTTACAA GAAggataatttattgaaaaatttaacaaattgaaagttttgacaTCGCT CAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGAct atttgggaattgaaaaatgaaaattgtaagTTTAGACGGTATGAACTTTT TCAGGAAAACCTCATAGTCCCTGTTGAGGTGGCTTATTTTCGTTCCAGGG GGAGATATGGTCGGATTCCATAGTGGTATACAAAATTCCGTCAGTAATAA TTTAATTCaaattaggaaatttttcatcttttaaattcattaaaaatacA GAATTTTATTCAAGCTGTTTCCTTGAATTGGAACAACGAAGAAATTGCAA TAATGATTTCTTTAAACGATGAGGAATATCTATTTGGCTTGGGAATGAAA AGTGAAAATCGTAAGATTACATGAaggttaatttgaaaaatttaacaaaa tgaaagtttttacATCATTAAATTATCATCAATTGATGGAAGCGAAtttg ctaagggtccgagggacGAAAGTCAgacagctaggacacgcagataGAAA AACGTGATAGCGAATCCTTATGTTGGTTTTTATAAAaccttcgtcataac ttttcgaattaaaaaatctttttgagtgTGAATACGTAAATTTTCACTTT TCCACCTTACGTACAAATTTTGCCtattttttttcgctttttcaCCGATG TATTATTTTGACTGTGACACTGAACATTGAATTCAATATCACTTTCCTCT ATTTTTAAGGTAAAAAGAAACAGATAACAATGTATAACAGCATTAAGAAA TCATGGTTCATTCCACGTGAATACGAAAATAGAGATATTCCACCTTTGTT ATTGGGTAATTTTTCTGTATCAAGCACTTCAAGCTACTCCAACGAGCATG CGCAAGGGTTCTTCCACACTGGTAAATATTATTTGATCCTacaagaagaa aaggaagaaaatatcGTTCACGTGATCAAATTCGATATAGAAGAATTCCA ATGGGTACACAGTCGAATAATTATCAGCTTACCAAAAACTGAACTAGATG GTCACcgagaaaatgttttcaattcaACCAGTGGTGTATTGGTTCATATC ATACAAACATACCCAACAAACGAACGTCATGAAACTGTAATGGATCTTTA TAATTACAACATTGTTGATCTTTTTGACGAGCTTAATggcaaagatttaa aaattccTGAATCAACTGAACCAGAATCACCACCAAGAACACCAACATTT TATAATCCTGAGGATTTTTCAGAACCCCAAAATTCACCAGATCTATCTTT TATGGCTAGTATCTTTGAAGATTCGTACAATCAAGATTCGAACGATGAAT CTAGTAGACCTACATCGTTTTTTGAATTGCCCTCAGAATCACAAAGTCAA AATCTAAACAGGGAACATGGTTCACCAGAGTCACTTAAAGCTGATTTAAA TAGAGATTTGCAGCATCATGattcaaaaattgatgacgaAGCATCCACTC CAGATCTGTCTTTGACATATGATCAATTATTCAACTCGATAACTTGTAAA TATGCAGAATTTCTTGGCCACGAGAATCCCACTTTACTTATAAGCAGTTA TTTTACTAAGTATTATGAGAGTAACCAGGACGAGAAATACAACTATCTGG ATTTTATCAAGATACAAAAAGATCAACTTTGTCACGAGAGAAGATTGGTT ATAGATTTCGAAACCGCTGGTGGATCAGTATTTGCGAGAAGGGAATATAC TaaggacaaaatatttttctttaaaaggtcttATATTGAAGATAGTGAAG ATATGATAAACCTAAAGATCATTGAATGTGATTATTCCGGTAATTTCTTA TATTCGTATGATTTGGAATACATTGAATCGTGGATGTTGTTTAATGTTGT TGATCTTAAACATTCAAATTACATATTTCTTTATAATGGCTATGGCGAAT TAGAGGACCTTGAATTAAGAGCTTTAAAACTGGAGAATGGGGTTCGTTTG TCaataaatgaaacaaaaaacttCATTCTCTCTGTGAAGGTACCAGTAGA ATATAGAGGAAGGGACTTCAGAGTGCGTGCCCCTATCAAGAAGTTCGATC GCCTTGTTATGCCACTTTACTGTGCCACAAAGGATGTATTTCACCCTGAA TTTTACATGGCAATTGATTTATCTACTATAGAAGTTGTTCACCAAATTAT TTCTCCTGAAAATTCACATCCTTGCTATTCTGTAAATTGGAACAATGAAG AAATTGGGATGACTTTTCGTAAAGATAATCTTCAAAATGCTACGAGACTT GGACCGTTATGTTTTAAAATGGCTTGCAATAATATTGAAAGGAAAGAAGA AAtgaaatctttgaaatattTGGCAAGATTTGCTGTTTTAACATCGTTTA CTTATAATGAATTATTTAAAGCAAATCTTCCATCTTCCTTATTTAATTAT TTGGGGATTGAAAACTAGTTGCTTACTGAATACAAATACATTTTCCacta atatttgaaaaacatttgaaaaatggagGAAAAACAATAAggaaattcat caaaatcacCTAATATGAAGCGAACATTATTAATATTGATAGTTTTGTAT CCTTCCCGTTAAAAAATTTATATCTaggcaaaaatataaaaatgtagtgt ttcacgaaaccggccgggtgaaaaaaaaaaaattctgacccggccgcaga ctatgggttcatctatatggttcatcGTAAAGAAAATCAATCTGACCGTT CAAACTATCAAACGCTGTTTGGTTAGATATTttcgcttgtaaatcaagtt ttgttcgttagtagtcGATGCATTGGTGTTCAAGACTTCATACtgtttat aaataaaagttatctttaaagttctatttcaatgatctttatagttatca aaaaaagcaaaacaaaatttttcccgTTCGGCCGCATGAGAGTTTTGTTC CTCCACCCGCATTCTGGAAACactgcatttttttattttcgctctACCAA ACTATTTTATACCCGCTATATTAagacagatattttacaaaatttataat ttttatattaTCAAACCCAATGAATAAATTACCagattttcttacaaaaa tcagTAATCGTAAGTTTCGGTTGTTCCCCAGGGGacggggtactaccctt gtcgactgACAGGgcgctccgctgaggttcgaaaaatggaccctacgtgg gactcgttttttaaaaaattttgccgaaatttgcgaaaaaagtgactcTG AATGGGACTGGAGttccaaaatttctccaaagttttaaaattttctactt tttccccaagtTTTCCCAAaagagggactgatttttctattttggtgttt tagcaaccctacctgggactcttggaggttaaaaaaggtaccctaaccag cggcgcatccccgtaacccattttgccctagtatcCCCCCCCCCAGGGTT GTTCTTAGATGTTTATAGTACGTTTCAGCAATAAACTATCATTTTCCTAT TTCAAGCCCCAGGGGCTTTTTGTGACATGTTGTATCTCGACGTGATATAA TAATTGTCTAACTTTATTGCTTTCAACTTAGCagttattgtaaaaaaaaa ggacATTGTTTGActatttgggaattgaaaagtgaaaattgTAGCATTAT ACAGGGAAAAtgaaatctttgaaataatTAGTAAGATTGAATATTTTACC ATTATACTGTTATATCTTTATAGGTATGGAACTCAATTGGTCATTGACCA GAGTAATGAGGCGTAGTTAAACATTTTATGGTTACAATGCTTTTtttaat ggaaatttttaaaataagggGACAATTTAAGATTCAGTGAAGCCTTTATC AGTTTTTACCAAagagattgaagattttttcaatATCTATTACATAGATC AATATAAATtctaataatttttcatttccaaaaaagttttatattttatc TATtgtaccaaaaatattttgtttcttttgaagTTTTGTTAGATCTTTGA GCAATGTTTACTATCAAACACCTATCAAACATCGGACGGGTATCAGGAAC ACAAGCGTAGGAGTACCCTTGTTAGATATCTCTGCATTGAAAGTATAAAG TAAGGCCAATTAAGTTGAGGAAATCGGTTAAAATATCTGGTTAAAATCAC TACAAGTTTCTATAATTCCACCATTTTTCTTTAGCTCGTGATAAAATTGC ATGTACTTTCTTGTGAATTATAACATTTTGTCATTCTTTTACAgttacaa aaaaacattaaaatcaaaaacattaaaaaaattgcGATGATTGACGACAA GAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAGGATATACAACCAC TATTCATCGGATTTGAGCCATTTGATAAAGATGAGATGGGATTTTACCAC ACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAAAAACCGATACCGT GCGTATTCATATTATCGAATTctataaaagttattctaaattTCTTCAAC GCGTTGTGACCNtaaattgaaagttttgacaTCGTTCAATTATCATCAAT TAATGGAAGCGGATTTGCCATCGATATTGTTTGActatttgggaattgaa aaatgaaaattgtaagTTTACAAGAAggataatttattgaaaaaNTATCC GATACTGTGCGTATTCATATTATCGAATTCTGTaaaagtttttctaaatt tcttcaACGCATTGTGACCGTTAAACTTCGTTCCTGCGTTGGATATTATA ATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttcttcataCA ATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGACCTTTATGG TTNCATCAATTGATGGAAGCGAAtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045263XLOC_045263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072968-exon-scaffold_86-1491911889:1391773..1393050TCONS_00072968-exon-scaffold_86-1491911889:1391773..1393050Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1510915933:1391773..1393050TCONS_00072968-exon-scaffold_86-1510915933:1391773..1393050Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1575043694:1391773..1393050TCONS_00072968-exon-scaffold_86-1575043694:1391773..1393050Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1491911889:1393351..1393525TCONS_00072968-exon-scaffold_86-1491911889:1393351..1393525Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1510915933:1393351..1393525TCONS_00072968-exon-scaffold_86-1510915933:1393351..1393525Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1575043694:1393351..1393525TCONS_00072968-exon-scaffold_86-1575043694:1393351..1393525Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1491911889:1400227..1400249TCONS_00072968-exon-scaffold_86-1491911889:1400227..1400249Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1510915933:1400227..1400249TCONS_00072968-exon-scaffold_86-1510915933:1400227..1400249Clytia hemisphaericaexon
TCONS_00072968-exon-scaffold_86-1575043694:1400227..1400249TCONS_00072968-exon-scaffold_86-1575043694:1400227..1400249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1391773..1400249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1705 0 1.58749e-08 3.48976 1.40792 0.626436 1.86781 0 0.255204 0 0 0 0.292644 0.315893 0.713731 0.446768 0 3.75834e-06 0 0.00733989 0.333647 1.09113 0.435201 0.625691 0 0.419867 0 0 0.271714 0.429439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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