|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072967 ID=TCONS_00072967|Name=TCONS_00072967|organism=Clytia hemisphaerica|type=transcript|length=1655bp
CGATGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCC
AAGGATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGA
GATGGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAA
AAAAAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttat
tctaaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGG
ATATTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttc
ttcataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGAC
CTTTATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACAT
TGAATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTG
CCAGTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAAC
AATATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGC
TAACGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAA
ACATCGAGCTACATCaaataaagcaagaaaaaagaCTGGTAATAGAATTA
GACAGACCGttggaaaattcttttgtttttcgatATTTTACCAAGCATAA
GATCTATTTTGAAAGGATCGATAACAAACACAATACCATTAAGTCAACAA
TCTTAGAATATGATTACTCGGGTAAATTTTTATATTCATATTCCATTGAT
TATTCCGATTCATTTGTAAAGCATTTCGAATGTATTAGAAATTCAAactt
aatatttttatatttttaccccAGAAAAACTAAACCTGAGGATCTTGAAA
TACGAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTGTTAAAGaagtt
aaaaatattatatttccgAAAGAGGACGGAGTTATGTACAAATCAGTCGC
ATTAAATGATCCAATTAAAAGATTCAATCATACTGTATTACCAGCTTTAT
TAAGGGACGATGTCCACGGGGTATATATGACTCTGGATTTAACAAACATG
AAAATTACACGTAAGTCTCAAAGACAAATTATGACTGAAGATGACGATAT
TCAGGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGCAATGATTTCTT
TAAACGATGAGGAATTCGTATTTCAAATTGCACGCAATGATACTGTTGAA
GGGAACGGTAGtgtaaaatctttgaaacatTTGGCAAGATTTGCTGTTTT
GACATCGTTCAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT
TGTTTGACTATTTGGgcatagaaaaatgaaaatcgtAAGATTACACGAAg
gataatttattgaaaaATTTGGCAAGATTTGCTGTTTTGACATCGTTGAA
TTATCATCAATTAATGGAAGCGAATTTGCCATCAACATTGTTTGActatt
tgggaattgaaaaatgaaaattgtaagTTTACAAGAAggataatttattg
aaaatttgacaaattgaaagttttgacaTCGTTCAATTATCATCAATTAA
TGGAAGCGAATTTGCCATCGATATTGTTTGActatttgggaattgaaaat
gaaaa Run BLAST on NCBI transcript from alignment at scaffold_86:1391773..1393589+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072967 ID=TCONS_00072967|Name=TCONS_00072967|organism=Clytia hemisphaerica|type=transcript|length=1817bp|location=Sequence derived from alignment at scaffold_86:1391773..1393589+ (Clytia hemisphaerica)
CGATGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCC
AAGGATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGA
GATGGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAA
AAAAAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttat
tctaaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGG
ATATTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttc
ttcataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGAC
CTTTATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACAT
TGAATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTG
CCAGTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAAC
AATATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGC
TAACGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAA
ACATCGAGCTACATCaaataaagcaagaaaaaagaCTGGTAATAGAATTA
GACAGACCGttggaaaattcttttgtttttcgatATTTTACCAAGCATAA
GATCTATTTTGAAAGGATCGATAACAAACACAATACCATTAAGTCAACAA
TCTTAGAATATGATTACTCGGGTAAATTTTTATATTCATATTCCATTGAT
TATTCCGATTCATTTGTAAAGCATTTCGAATGTATTAGAAATTCAAactt
aatatttttatatttttaccccAGAAAAACTAAACCTGAGGATCTTGAAA
TACGAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTGTTAAAGaagtt
aaaaatattatatttccgAAAGAGGACGGAGTTATGTACAAATCAGTCGC
ATTAAATGATCCAATTAAAAGATTCAATCATACTGTATTACCAGCTTTAT
TAAGGGACGATGTCCACGGGGTATATATGACTCTGGATTTAACAAACATG
AAAATTACACGTAAGTCTCAAAGACAAATTATGACTGAAGATGACGATAT
TCAGGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGCAATGATTTCTT
TAAACGATGAGGAATTCGTATTTCAAATTGCACGCAATGATACTGTTGAA
GGGAACGGTAGtgtaaaatctttgaaacatTTGGCAAGATTTGCTGTTTT
GACATCGTTCAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT
TGTTTGACTATTTGGgcatagaaaaatgaaaatcgtAAGATTACACGAAg
gataatttattgaaaaatttgacaaattgaaagttttgacaTGGTTCAAT
TATCATCAATTAATGGAAGCAAATTTGCCATCGATATTGTTTGActattt
gggaattgaaaaatgaaaattgtaagTTTACAAGAAggataatttattga
aaaatttgacaaaNCAAATCTTTGAAACATTTGGCAAGATTTGCTGTTTT
GACATCGTTGAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACAT
TGTTTGActatttgggaattgaaaaatgaaaattgtaagTTTACAAGAAg
gataatttattgaaaatttgacaaattgaaagttttgacaTCGTTCAATT
ATCATCAATTAATGGAAGCGAATTTGCCATCGATATTGTTTGActatttg
ggaattgaaaatgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072967-exon-scaffold_86-1491911889:1391773..1393188 | TCONS_00072967-exon-scaffold_86-1491911889:1391773..1393188 | Clytia hemisphaerica | exon |
| TCONS_00072967-exon-scaffold_86-1510915933:1391773..1393188 | TCONS_00072967-exon-scaffold_86-1510915933:1391773..1393188 | Clytia hemisphaerica | exon |
| TCONS_00072967-exon-scaffold_86-1575043694:1391773..1393188 | TCONS_00072967-exon-scaffold_86-1575043694:1391773..1393188 | Clytia hemisphaerica | exon |
| TCONS_00072967-exon-scaffold_86-1491911889:1393351..1393589 | TCONS_00072967-exon-scaffold_86-1491911889:1393351..1393589 | Clytia hemisphaerica | exon |
| TCONS_00072967-exon-scaffold_86-1510915933:1393351..1393589 | TCONS_00072967-exon-scaffold_86-1510915933:1393351..1393589 | Clytia hemisphaerica | exon |
| TCONS_00072967-exon-scaffold_86-1575043694:1393351..1393589 | TCONS_00072967-exon-scaffold_86-1575043694:1393351..1393589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1391773..1393589 + |
Blast
The following BLAST results are available for this feature:
|
