TCONS_00072962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072962
Unique NameTCONS_00072962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072962 ID=TCONS_00072962|Name=TCONS_00072962|organism=Clytia hemisphaerica|type=transcript|length=1147bp
ATCACACAGTATGAAAGGGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCT
AAATAAGCAAGCTGTGAACAGCTGCTTCTTTGCAATACATCCGTGCTGAG
GGATTTGTATTTGCGCATGTCGCTGATGAGGGAATTATCCAATCAGATGC
CGGCTCGTTGTTACGGTACCGAAAATCTATTGATGCTGATGACATCATGA
TTTGGACAGATATCAAGAAAAAACACAGCTCACACCAGATAACATCAGAC
GTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTCTTTCTATCGGACGG
TCTTATCATCACTGGATCGTCTACCGGACAAGCTGCCTCGGTTACTGACC
TTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTATAATTGGCTCCGGA
ATCAGCCCGGATAATGtggaaaatttctcaaaagcaCACGCTATGATCGT
TGGTTcttatttcaagaaaaatgggCTATGGAGTAATGAAATTTGTATGG
ATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGCTGCAAAATGAACCT
CAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCTATCTAGGTGACTGC
CATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACGACAA
TATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtggacAAT
CAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtcattgt
tttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGGTGCT
ATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGTGATG
CGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatatattg
gtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTTGATA
GTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCCTAAA
GGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAAAACA
AAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACCCTGA
GCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATCG
Run BLAST on NCBI

transcript from alignment at scaffold_86:1313515..1316632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072962 ID=TCONS_00072962|Name=TCONS_00072962|organism=Clytia hemisphaerica|type=transcript|length=3118bp|location=Sequence derived from alignment at scaffold_86:1313515..1316632+ (Clytia hemisphaerica)
ATCACACAGTATGAAAGGGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCT
AAATAAGCAAGCTGTGAACAGTAGGTATACTTCATGTACTGTATTTCATC
GTGAATATGGAACTACATGTCATCGTCTAATAGaggaaaattgtccaaat
tcCTTCTCtgttcaatatattttttagtgATTGCTACATTATTTAACCTA
AACTGAAGTTCATATATATAAACTCGCCCAAATCGATTGAAATGAGCTCA
TTTGGCTCGCCATTCACAAAACTGATCTTTATCTACCTTGCCCTTGCCCT
TGCCCTTGCCCTATCTATGCATGATCAAAGACTACAACTGGTCCGTTCTG
TTAGCCTATTTCAACACTTTTGAGTTCACTCTATAGATTAGTTCGATACG
CGATATTTCGTTGAAGTTCAACTGTTTTTAACTTTCTGGTACTTCAATGT
TGTTTTTCAATGCTGTTATTTTTACTATTTGTATACTCTGCCCTAATCTT
CACTTATTCACGGAATCTGGTAAATGAACGGTCTGAATTTCAGAATGGCC
AAGGAGTAGCCAAAATGTTTCGAATTTGTTTGATGTAGAAACTTCTTACA
AGGAAAACTTACTAAAAGATTGAAATTATTCAAAGATTTGCTTTTCCTCA
TTTATACAGGCTGCTTCTTTGCAATACATCCGTGCTGAGGGATTTGTATT
TGCGCATGTCGCTGATGAGGGAATTATCCAATCAGATGCCGGCTCGTTGT
TACGGTACCGAAAATCTATTGATGCTGATGACATCATGATTTGGACAGAT
ATCAAGAAAAAACACAGGTTGGTTAAAGAACAAAGaacataccttatcgg
ccctttttacattggcccttattggcgttatttttgggctcttGGCGTAA
TAAAGGCCGGTGTAAAAACGGCCGATAAGGTAGCCTTTTTCAGTTGCAAT
TCGATTCAGTTTCTTGCACACTTTTTGTGTTTGACTTTAAGTTCAGGAAT
TGCATGACCACGTGATTAATTTCGCCTGATGAAATAGCCAATCATAGTGG
ATACTGTTCAACCTTACAATGTGACCGACTCCTGTATCATTTAGTCATTT
TGAAAGATTAAGGGAGACGAAGTATATGTCAAGTATTGTGCTACATTGAC
ATATAAAAAACGAGTGATTAATATCATTTGATACAGTGTCCAAACTTTTC
CTATCATATTCATACGAAAGATTTCTGATTACACCCAATTTTTCCATCAC
ACTAATATATTGGATTATATCCATCAAAAATCtgtgaaaattaataacaa
cacaaaaaaaaactaggtcaagttttttctgatataatgttttgattttg
atgtctGCAACTATAGAAACGTCTTcttgaatttgatattttgttaaaat
tcaaaacataacTTTTACAGCATTCTTACTTTCCTTCCCAGCTTCACTTT
TTATACTTTTAATCATAAAAATGCTAAACTATACCAACAACGGTATCATA
GTTTTGTTTCTGATCTTGACATTCTTATCAACGTACCTTGCAATATTTTG
CTAAGTCAGCATAAGAGAATGATATAACCGAACTATATATATACTTCACT
ACATACATACAGTCATAATGtcgttttaagccaatcaaaataattgaaat
tttttgaaagtaagCTGGTGTTTTCTGAGAGCAGAAAGCATTTCATTTTG
TTCTTCCGTAGTCAACAATTAATTCCTATAGTGTACTTTAATACTGTAGT
CTCTTTTGACTTCTATCCTCTATACATGAGTTTGTTCCAATAATATTGGT
CGTTCGTCAACACTGTAATTGTTATGACGCATTAACACAAGATTATAAAC
TGATACCTCACCTTCCAACTCAGTGATAGTTATCTCATgaattcttatat
tttttatagCTCACACCAGATAACATCAGACGTGTCGCTATCTGAAACGT
GTCACGCTGCTGAATTCTTTCTATCGGACGGTCTTATCATCACTGGATCG
TCTACCGGACAAGCTGCCTCGGTTACTGACCTTAAAGATGCCGTATCCAC
CGTGTCTATTCCGGCTATAATTGGCTCCGGAATCAGCCCGGATAATGtgg
aaaatttctcaaaagcaCACGCTATGATCGTTGGTTcttatttcaagaaa
aatgggCTATGGAGTAATGAAATTTGTATGGATAGGTTGAACTCGTTGGT
TCGTGCTGTTACACAGCTGCAAAATGAACCTCAAAGGTGAAAACCAGAGA
GATAGGAAATGAAAGCTATCTAGGTAGCTatgaatttttaaacatttttt
tctataagatcaTAATATTGATTGCATTTCGTAAATTTCATGAACAGCTC
CGTGCGGTCGATTTTAAATGAACCACGGCCAGCTATGGCGCGTTGAATTT
CTTTGGAAAGCCGGAATCACATGAAAGGTGTGTTCCTCCAATAAccattt
tttttagaaacaacAGATTCTATGTATACAAAACGCTTATAATATAAAAA
CGAACGAAATAAATAATCAATAACGGTGAATTTTCAATCGTCGATTATGT
TCGTATCTAATAGGTGACTGCCATGGAAACCTCGCTAGATAAAATAAAAG
ATGACTTATTTTAAACGACAATATTGCATCAGCCATAAAAATCATGAttc
aagaaaacgaaagtggacAATCAATTCGGACAGTTTAAATCAATAATACG
GATAGAGGGGAAAAtcattgttttttattgatGTTCGTCGCACCTATTGA
ATCTGATTAAGGAGGGGTGCTATAAACAGCTCTACATCATAAATTATAGA
ATAAAACATGTTCATGTGATGCGATCTGTTTATTTGATGTCCTGACCCAC
CACgctatgaaaaatatattggtCGAGCTATCGAATCTGTTTTTTATATA
TGCAATATTTAGTATTTGATAGTTTACTTATGACGAATTTTGTATATTTC
CCTCAAATAGTAAATCCTAAAGGCAATTTATGACTATAACTTAAAAAATA
GGTCATGGTTTACGAAAAACAAAGCCAGATACCAACCAAATAGCAATTTG
AACATTAATCTCGTACCCTGAGCAACTTGTACCACTTTTCGATTTCACTG
ATGAACGTGATACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045261XLOC_045261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072962-exon-scaffold_86-1491911889:1313515..1313584TCONS_00072962-exon-scaffold_86-1491911889:1313515..1313584Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1510915933:1313515..1313584TCONS_00072962-exon-scaffold_86-1510915933:1313515..1313584Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1575043694:1313515..1313584TCONS_00072962-exon-scaffold_86-1575043694:1313515..1313584Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1491911889:1314174..1314331TCONS_00072962-exon-scaffold_86-1491911889:1314174..1314331Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1510915933:1314174..1314331TCONS_00072962-exon-scaffold_86-1510915933:1314174..1314331Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1575043694:1314174..1314331TCONS_00072962-exon-scaffold_86-1575043694:1314174..1314331Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1491911889:1315424..1315787TCONS_00072962-exon-scaffold_86-1491911889:1315424..1315787Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1510915933:1315424..1315787TCONS_00072962-exon-scaffold_86-1510915933:1315424..1315787Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1575043694:1315424..1315787TCONS_00072962-exon-scaffold_86-1575043694:1315424..1315787Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1491911889:1316078..1316632TCONS_00072962-exon-scaffold_86-1491911889:1316078..1316632Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1510915933:1316078..1316632TCONS_00072962-exon-scaffold_86-1510915933:1316078..1316632Clytia hemisphaericaexon
TCONS_00072962-exon-scaffold_86-1575043694:1316078..1316632TCONS_00072962-exon-scaffold_86-1575043694:1316078..1316632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1313515..1316632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.136641	0	0	0	0	0.0812979	1.19081e-05	0.0024771	0	0	0	5.56042e-08	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top