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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072962 ID=TCONS_00072962|Name=TCONS_00072962|organism=Clytia hemisphaerica|type=transcript|length=1147bp
ATCACACAGTATGAAAGGGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCT
AAATAAGCAAGCTGTGAACAGCTGCTTCTTTGCAATACATCCGTGCTGAG
GGATTTGTATTTGCGCATGTCGCTGATGAGGGAATTATCCAATCAGATGC
CGGCTCGTTGTTACGGTACCGAAAATCTATTGATGCTGATGACATCATGA
TTTGGACAGATATCAAGAAAAAACACAGCTCACACCAGATAACATCAGAC
GTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTCTTTCTATCGGACGG
TCTTATCATCACTGGATCGTCTACCGGACAAGCTGCCTCGGTTACTGACC
TTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTATAATTGGCTCCGGA
ATCAGCCCGGATAATGtggaaaatttctcaaaagcaCACGCTATGATCGT
TGGTTcttatttcaagaaaaatgggCTATGGAGTAATGAAATTTGTATGG
ATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGCTGCAAAATGAACCT
CAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCTATCTAGGTGACTGC
CATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACGACAA
TATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtggacAAT
CAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtcattgt
tttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGGTGCT
ATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGTGATG
CGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatatattg
gtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTTGATA
GTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCCTAAA
GGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAAAACA
AAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACCCTGA
GCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATCG Run BLAST on NCBI transcript from alignment at scaffold_86:1313515..1316632+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072962 ID=TCONS_00072962|Name=TCONS_00072962|organism=Clytia hemisphaerica|type=transcript|length=3118bp|location=Sequence derived from alignment at scaffold_86:1313515..1316632+ (Clytia hemisphaerica)
ATCACACAGTATGAAAGGGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCT
AAATAAGCAAGCTGTGAACAGTAGGTATACTTCATGTACTGTATTTCATC
GTGAATATGGAACTACATGTCATCGTCTAATAGaggaaaattgtccaaat
tcCTTCTCtgttcaatatattttttagtgATTGCTACATTATTTAACCTA
AACTGAAGTTCATATATATAAACTCGCCCAAATCGATTGAAATGAGCTCA
TTTGGCTCGCCATTCACAAAACTGATCTTTATCTACCTTGCCCTTGCCCT
TGCCCTTGCCCTATCTATGCATGATCAAAGACTACAACTGGTCCGTTCTG
TTAGCCTATTTCAACACTTTTGAGTTCACTCTATAGATTAGTTCGATACG
CGATATTTCGTTGAAGTTCAACTGTTTTTAACTTTCTGGTACTTCAATGT
TGTTTTTCAATGCTGTTATTTTTACTATTTGTATACTCTGCCCTAATCTT
CACTTATTCACGGAATCTGGTAAATGAACGGTCTGAATTTCAGAATGGCC
AAGGAGTAGCCAAAATGTTTCGAATTTGTTTGATGTAGAAACTTCTTACA
AGGAAAACTTACTAAAAGATTGAAATTATTCAAAGATTTGCTTTTCCTCA
TTTATACAGGCTGCTTCTTTGCAATACATCCGTGCTGAGGGATTTGTATT
TGCGCATGTCGCTGATGAGGGAATTATCCAATCAGATGCCGGCTCGTTGT
TACGGTACCGAAAATCTATTGATGCTGATGACATCATGATTTGGACAGAT
ATCAAGAAAAAACACAGGTTGGTTAAAGAACAAAGaacataccttatcgg
ccctttttacattggcccttattggcgttatttttgggctcttGGCGTAA
TAAAGGCCGGTGTAAAAACGGCCGATAAGGTAGCCTTTTTCAGTTGCAAT
TCGATTCAGTTTCTTGCACACTTTTTGTGTTTGACTTTAAGTTCAGGAAT
TGCATGACCACGTGATTAATTTCGCCTGATGAAATAGCCAATCATAGTGG
ATACTGTTCAACCTTACAATGTGACCGACTCCTGTATCATTTAGTCATTT
TGAAAGATTAAGGGAGACGAAGTATATGTCAAGTATTGTGCTACATTGAC
ATATAAAAAACGAGTGATTAATATCATTTGATACAGTGTCCAAACTTTTC
CTATCATATTCATACGAAAGATTTCTGATTACACCCAATTTTTCCATCAC
ACTAATATATTGGATTATATCCATCAAAAATCtgtgaaaattaataacaa
cacaaaaaaaaactaggtcaagttttttctgatataatgttttgattttg
atgtctGCAACTATAGAAACGTCTTcttgaatttgatattttgttaaaat
tcaaaacataacTTTTACAGCATTCTTACTTTCCTTCCCAGCTTCACTTT
TTATACTTTTAATCATAAAAATGCTAAACTATACCAACAACGGTATCATA
GTTTTGTTTCTGATCTTGACATTCTTATCAACGTACCTTGCAATATTTTG
CTAAGTCAGCATAAGAGAATGATATAACCGAACTATATATATACTTCACT
ACATACATACAGTCATAATGtcgttttaagccaatcaaaataattgaaat
tttttgaaagtaagCTGGTGTTTTCTGAGAGCAGAAAGCATTTCATTTTG
TTCTTCCGTAGTCAACAATTAATTCCTATAGTGTACTTTAATACTGTAGT
CTCTTTTGACTTCTATCCTCTATACATGAGTTTGTTCCAATAATATTGGT
CGTTCGTCAACACTGTAATTGTTATGACGCATTAACACAAGATTATAAAC
TGATACCTCACCTTCCAACTCAGTGATAGTTATCTCATgaattcttatat
tttttatagCTCACACCAGATAACATCAGACGTGTCGCTATCTGAAACGT
GTCACGCTGCTGAATTCTTTCTATCGGACGGTCTTATCATCACTGGATCG
TCTACCGGACAAGCTGCCTCGGTTACTGACCTTAAAGATGCCGTATCCAC
CGTGTCTATTCCGGCTATAATTGGCTCCGGAATCAGCCCGGATAATGtgg
aaaatttctcaaaagcaCACGCTATGATCGTTGGTTcttatttcaagaaa
aatgggCTATGGAGTAATGAAATTTGTATGGATAGGTTGAACTCGTTGGT
TCGTGCTGTTACACAGCTGCAAAATGAACCTCAAAGGTGAAAACCAGAGA
GATAGGAAATGAAAGCTATCTAGGTAGCTatgaatttttaaacatttttt
tctataagatcaTAATATTGATTGCATTTCGTAAATTTCATGAACAGCTC
CGTGCGGTCGATTTTAAATGAACCACGGCCAGCTATGGCGCGTTGAATTT
CTTTGGAAAGCCGGAATCACATGAAAGGTGTGTTCCTCCAATAAccattt
tttttagaaacaacAGATTCTATGTATACAAAACGCTTATAATATAAAAA
CGAACGAAATAAATAATCAATAACGGTGAATTTTCAATCGTCGATTATGT
TCGTATCTAATAGGTGACTGCCATGGAAACCTCGCTAGATAAAATAAAAG
ATGACTTATTTTAAACGACAATATTGCATCAGCCATAAAAATCATGAttc
aagaaaacgaaagtggacAATCAATTCGGACAGTTTAAATCAATAATACG
GATAGAGGGGAAAAtcattgttttttattgatGTTCGTCGCACCTATTGA
ATCTGATTAAGGAGGGGTGCTATAAACAGCTCTACATCATAAATTATAGA
ATAAAACATGTTCATGTGATGCGATCTGTTTATTTGATGTCCTGACCCAC
CACgctatgaaaaatatattggtCGAGCTATCGAATCTGTTTTTTATATA
TGCAATATTTAGTATTTGATAGTTTACTTATGACGAATTTTGTATATTTC
CCTCAAATAGTAAATCCTAAAGGCAATTTATGACTATAACTTAAAAAATA
GGTCATGGTTTACGAAAAACAAAGCCAGATACCAACCAAATAGCAATTTG
AACATTAATCTCGTACCCTGAGCAACTTGTACCACTTTTCGATTTCACTG
ATGAACGTGATACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072962-exon-scaffold_86-1491911889:1313515..1313584 | TCONS_00072962-exon-scaffold_86-1491911889:1313515..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1510915933:1313515..1313584 | TCONS_00072962-exon-scaffold_86-1510915933:1313515..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1575043694:1313515..1313584 | TCONS_00072962-exon-scaffold_86-1575043694:1313515..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1491911889:1314174..1314331 | TCONS_00072962-exon-scaffold_86-1491911889:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1510915933:1314174..1314331 | TCONS_00072962-exon-scaffold_86-1510915933:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1575043694:1314174..1314331 | TCONS_00072962-exon-scaffold_86-1575043694:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1491911889:1315424..1315787 | TCONS_00072962-exon-scaffold_86-1491911889:1315424..1315787 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1510915933:1315424..1315787 | TCONS_00072962-exon-scaffold_86-1510915933:1315424..1315787 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1575043694:1315424..1315787 | TCONS_00072962-exon-scaffold_86-1575043694:1315424..1315787 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1491911889:1316078..1316632 | TCONS_00072962-exon-scaffold_86-1491911889:1316078..1316632 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1510915933:1316078..1316632 | TCONS_00072962-exon-scaffold_86-1510915933:1316078..1316632 | Clytia hemisphaerica | exon |
| TCONS_00072962-exon-scaffold_86-1575043694:1316078..1316632 | TCONS_00072962-exon-scaffold_86-1575043694:1316078..1316632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1313515..1316632 + |
Blast
The following BLAST results are available for this feature:
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