TCONS_00072954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072954
Unique NameTCONS_00072954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=transcript|length=780bp
Aaataattaccatggtgattatgtcccttgagacattaaatgattttttt
atggatacgaagtagttttaataaaatccgctggaagTTAATCATcatga
caataatttcaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaa
ggtctattacctCTTTTGGTGACAGTTGTTGTGCCCACACCTCCACCCGA
GGATATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCA
GTTTAAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCT
GGTAACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAG
AAACGGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAAT
CGTCTGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAA
TACAAGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAA
AGTCAAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAG
TCGAAGATGAGATCCAGAACTATCCGTCAATCAATGGTACATCAAATTTC
CAACTGGAATTGAAAATGACTCGACCAGACAGCGACAAAGAACAACAAAT
GGTCACTATTGGAGATCGTTTGCGATTCACTTTAAACCTCCCAAACGCTC
CGAAAGATGTGAAAACTTCACCTCAAAATTGTTACGCAACTAGAATAGAT
GGAAGCGGAAGATACGATTTGATTTCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00072954-protein

>TCONS_00072954-protein ID=TCONS_00072954-protein|Name=TCONS_00072954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MLKLECHSNGFEAGFSLKQLSVKTVPYSIRFSGNNNCSSVNKTSVGRIRN
GRLWIGSNYTECVIKSSEENDNIVFVQKLILEYKAKRPVHSSPISFGYKV
KCYLKRKVKEKMNLEVEDEIQNYPSINGTSNFQLELKMTRPDSDKEQQMV
TIGDRLRFTLNLPNAPKDVKTSPQNCYATRIDGSGRYDLISN
Run BLAST on NCBI

transcript from alignment at scaffold_86:1251840..1253349+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at scaffold_86:1251840..1253349+ (Clytia hemisphaerica)
Aaataattaccatggtgattatgtcccttgagacattaaatgattttttt atggatacgaagtagttttaataaaatccgctggaagTTAATCATcatga caataatttcaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaa ggtctattacctCTTTTGGTGACAGTTGTTGTGCCCACACCTCCACCCGA GGATATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCA GTTTAAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCT GGTAACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAG AAACGGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAAT CGTCTGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAA TACAAGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAA AGTCAAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAG TCGAAGATGAGATCCAGAACTATCCGTCAATCAGTGAGtatttaaaggaa aaaatattgttgaattttttttttaggtgaatgaacgaaaaagttttttt cgaggGAATACAAATAAGCGGATGGCTGGAAAATATTAATTTTGCGGTAA TTTAATTTTGCGTTTGAAGGATATCTTCAGTGTTTTAAAATAAGCAATAA ACCTGTTTTAAGCTcaagatagaaaaaaatttgggaaacaaaaaaaatta atcaaatttgGTGTGAATTTAAATTGAATGATGGTGTATTTTCGAGTAAA TGCACCTAATCAACTTTCTTTCCCCTAAAATTTCTCCTTTTAAAAGGtat tgtttcttataaaaatactttctttaaatatctttctaaatctgaaaaaa attaattatttgctaaaaatatttattgagcTTCATGTTtcaacagaaaa aaattaaagcattTTGTTCGaatattggccaaaatttcataaaattgtct tgattgacattttgacgttattttttggaaaaaaaaatggTTCTACAAGT AACCATGTTAAAAAGGAGGCTCAAAGCTAACGAGTTTCTAATTCTTTCTG GATCCAGAGATTGTGTAAAGATTGAACTAGTTGATGTtggaaatagcttt aaaagaaCTTGCCCGATGCTTAAAAGGGTAATTGAGGATCTTgaatttct cagaaaaattcttttaaaaagggAATGTTTGAAGAGGATTTTATTAGGAT CCTTTTATTTTAGATGGTACATCAAATTTCCAACTGGAATTGAAAATGAC TCGACCAGACAGCGACAAAGAACAACAAATGGTCACTATTGGAGATCGTT TGCGATTCACTTTAAACCTCCCAAACGCTCCGAAAGATGTGAAAACTTCA CCTCAAAATTGTTACGCAACTAGAATAGATGGAAGCGGAAGATACGATTT GATTTCAAAC

Coding sequence (CDS) from alignment at scaffold_86:1251840..1253349+

>TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_86:1251840..1253349+ (Clytia hemisphaerica)
ATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCAGTTT
AAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCTGGTA
ACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAGAAAC
GGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAATCGTC
TGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAATACA
AGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAAAGTC
AAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAGTCGA
AGATGAGATCCAGAACTATCCGTCAATCAATGGTACATCAAATTTCCAAC
TGGAATTGAAAATGACTCGACCAGACAGCGACAAAGAACAACAAATGGTC
ACTATTGGAGATCGTTTGCGATTCACTTTAAACCTCCCAAACGCTCCGAA
AGATGTGAAAACTTCACCTCAAAATTGTTACGCAACTAGAATAGATGGAA
GCGGAAGATACGATTTGATTTCAAACATGCTCAAATTAGAATGTCACTCC
AATGGTTTCGAAGCTGGATTCAGTTTAAAACAATTATCAGTAAAGACGGT
ACCCTACTCTATCAGGTTTTCTGGTAACAATAACTGCAGCTCAGTTAATA
AGACTTCGGTAGGTCGGATCAGAAACGGAAGACTTTGGATTGGTTCAAAT
TATACCGAATGTGTAATCAAATCGTCTGAAGAAAATGATAACATTGTATT
TGTACAAAAACTTATTTTGGAATACAAGGCCAAACGACCAGTGCATAGTT
CACCGATCAGTTTCGGGTATAAAGTCAAATGCTATTTGAAGCGCAAGGTC
AAAGAGAAAATGAATCTTGAAGTCGAAGATGAGATCCAGAACTATCCGTC
AATCAATGGTACATCAAATTTCCAACTGGAATTGAAAATGACTCGACCAG
ACAGCGACAAAGAACAACAAATGGTCACTATTGGAGATCGTTTGCGATTC
ACTTTAAACCTCCCAAACGCTCCGAAAGATGTGAAAACTTCACCTCAAAA
TTGTTACGCAACTAGAATAGATGGAAGCGGAAGATACGATTTGATTTCAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045259XLOC_045259Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072954-proteinTCONS_00072954-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072954-exon-scaffold_86-1491911889:1251840..1252422TCONS_00072954-exon-scaffold_86-1491911889:1251840..1252422Clytia hemisphaericaexon
TCONS_00072954-exon-scaffold_86-1510915933:1251840..1252422TCONS_00072954-exon-scaffold_86-1510915933:1251840..1252422Clytia hemisphaericaexon
TCONS_00072954-exon-scaffold_86-1575043694:1251840..1252422TCONS_00072954-exon-scaffold_86-1575043694:1251840..1252422Clytia hemisphaericaexon
TCONS_00072954-exon-scaffold_86-1491911889:1253153..1253349TCONS_00072954-exon-scaffold_86-1491911889:1253153..1253349Clytia hemisphaericaexon
TCONS_00072954-exon-scaffold_86-1510915933:1253153..1253349TCONS_00072954-exon-scaffold_86-1510915933:1253153..1253349Clytia hemisphaericaexon
TCONS_00072954-exon-scaffold_86-1575043694:1253153..1253349TCONS_00072954-exon-scaffold_86-1575043694:1253153..1253349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1251840..1253349 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325775 0.121954 0 0.49243 0 0.0662858 0 0.149772 0.104991 0.0651007 0 0.0828959 5.32604 7.48852 6.01236 19.0633 1.91498 2.83117 14.7427 7.47179 7.95455 9.34909 3.56468 3.94001 4.12917 5.51391 0.613483 0 0.665238 0.434578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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