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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=1116bp
AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG
GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA
ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT
TTTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACA
TGTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGT
ATTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattgg
ttttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTT
TCTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACA
GTCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGG
GTATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCA
TGATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAA
CGCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATC
TTTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGC
AGGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGAT
ATTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTT
CAATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCT
TGAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGG
GAACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgataaatCTC
GGCTTTTATTGGTGTAGACTACCTTTCATTGAACTTCTTGAATGATTAAA
ATTGTGCCTCAAAGTCTATGTACAGTATATATACTTCGAAGGACAACAGC
AGCAGGGGACATTTTTTGGAAGCAAAATAGAACCTTGAAGGCTTGATTat
tgtaaagattttttttattgtgcTGTTTAGTATACTTCTTTATTTTGTCC
GAAATATGTAATATGA Run BLAST on NCBI protein sequence of TCONS_00072947-protein >TCONS_00072947-protein ID=TCONS_00072947-protein|Name=TCONS_00072947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MAPVARLVMAIVHLLLGFIGLPTNGLAAYLIIKTRQFENQSTRLVMYLSI
FDGIGSIIINGASAMYMLAYEEIDCVILLVVHGIVNLSIFCCFSIIVLIG
FDRLLRILYLNDYSLVFSEGRYKVSLIVAAVSTVIQSILIFIGFYMFGYG
YATMFSLPINVIGLVFMIICYCMSISKLKEMNERSRQISNTDRSVVRIAS
LHLAMFVCCFTPTVIWQVVNKLLLSKFLPGYIDILVVFGLYVLVSVHSSF
NGFIFLTVNREARQQILRFFNQVMQRLRRFFNREQVAPAVPVELNN Run BLAST on NCBI transcript from alignment at scaffold_86:1182023..1184571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica)
AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG
GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA
ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT
TTTTGATGGAATTGGTATGTGTTTTGTGTTTAATTATAGATCTATATATT
GTATAAAGGCGAATCTCTCTCAGTGCCTCGGTCGAACATTTTCCATATCT
ATCTTAAAGTTATATCAAAATCCCAGTGGGGATAGAATATCTACGtttaa
agctaaaaaaacaGAAGGGATgagtttttttccaatttttgctaGCGATG
AAACCATAGGGCCTTATCCCCAAAGTGATTGAAATTACAAGGTATCTATT
TCAAACGGGAGGCTTTGTGACCCAAGTGtaaaaagataataaaaaattga
ctgtaAGTAGGTAAGTCTGCGACTGCAGTCGGAggcaacccgaaggctcc
tctttcgatatctacccaaaggtaggggagggcgccactctttctccctg
gattgctccacttacccttgatccgtctctctTAATTACTGAGCATCCAG
CAGAGAGGCACCAAGTACcataccattttgggaatctttggtatgaacCC
GCAACCTtccgaaccgtagccggatgccctaccactgcactacggtcgtt
TAAATATTGACTGTTGTGTAACCTTTCTCTACCATTTTTCATTTAAGGAT
CCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAA
ATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAAT
TTTCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGA
GGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTACGTTT
AATGTATTTATTtgtttgggacacactgtacaattaatcaattaaaaaaC
GGATAAAGGATTCCTTAAAAGGGAACCAATCTTCGTGGCAACTAATTTTC
CTAATTAATTGAACATGAATATTTAAAAAGTCCATTccttttacagaccg
gtctccAATTGCGTGCTCTGCGATCAAACTTTTTTCAGCAAATCTTCCAC
GCTATTggctaaaagaaaaatgaaaccaTTCCATTGGTACCAGCTGATGC
AACggttgaaaaaacatttttttctcgagCGCGCTGCAATTTTataacgt
aatcttttttccaagccaAAAGGTGAGATCCCAGCATTAGCAAGAGGAAA
CCGGCCTTAAGTGTATACTCTTTTTGGTACCATGTAGAAACCATGTTAGC
ATAATTTAGAGTAATTGCCTTAAGGGTGGTTTCAACCGAGCGCTCACTTT
AAGCAAATAGACATTAGTAACgaaaagttttatttctttACTTAATGTTT
AAGTCGGtatgaaaaatgccaaaaattttgaccatttctctcaaattaaa
ggattttaggtatgattcgaagaaaATTGCGTGTATCTCGTTCGGTAAAA
TGTGCGCGCGATATACTAAATTGGTCCTTATATggctaaacattttttta
aattcagtgTTTTGTGCATGACTACATGACACCAAAATCTCGGGTTTCCT
CAGATCGCTCTGTTCGCACTAAATCCTCATATTGCAGCAAGAGAGCTCCt
atgattggtttgttttccctattttcccacgcgtttgtttttttgaacCG
GTTGCTATTacgaaaagtttaatttttttacttaaTGTTTAGGTCGGTAT
AAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTT
GATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCA
GTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGC
ATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTC
AAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGT
TCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTA
CTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGG
TTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCC
TGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAG
GTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGC
AGTGCCTGTAGAactaaataattgataaatCTCGGCTTTTATTGGTGTAG
ACTACCTTTCATTGAACTTCTTGAATGATTAAAATTGTGCCTCAAAGTCT
ATGTACAGTATATATACTTCGAAGGACAACAGCAGCAGGGGACATTTTTT
GGAAGCAAAATAGAACCTTGAAGGCTTGATTattgtaaagatttttttta
ttgtgcTGTTTAGTATACTTCTTTATTTTGTCCGAAATATGTAATATGA Coding sequence (CDS) from alignment at scaffold_86:1182023..1184571+ >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica)
ATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGG
CTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAA
CAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATT
TTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACAT
GTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTA
TTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattggt
tttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTT
CTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAG
TCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGG
TATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCAT
GATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAAC
GCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCT
TTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCA
GGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATA
TTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTC
AATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTT
GAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGG
AACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCG
GTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGG
GCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGT
TTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGA
ATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTA
CGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACC
TATCAATTTTCTGTTGCTTTTcgattattgttttgattggttttGATCGG
TTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGG
TCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAAT
CCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACA
ATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTG
TTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGAC
AGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTG
GCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAA
TAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTG
TGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTC
ATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTT
CAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTG
CACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCGGTTGCTAGA
CTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGGGCTTCCTAC
AAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGTTTGAAAATC
AATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGAATTGGATCC
ATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAAAT
TGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAATTT
TCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGAGG
ATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTCGGTATAA
AGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTTGA
TTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCAGT
CTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGCAT
GTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTCAA
ATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGTTC
GTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTACT
ATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGGTT
TATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCCTG
ACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAGGT
AATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGCAG
TGCCTGTAGAactaaataattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571 | Clytia hemisphaerica | exon |
| TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1182023..1184571 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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