TCONS_00072947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072947
Unique NameTCONS_00072947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=1116bp
AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG
GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA
ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT
TTTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACA
TGTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGT
ATTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattgg
ttttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTT
TCTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACA
GTCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGG
GTATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCA
TGATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAA
CGCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATC
TTTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGC
AGGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGAT
ATTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTT
CAATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCT
TGAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGG
GAACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgataaatCTC
GGCTTTTATTGGTGTAGACTACCTTTCATTGAACTTCTTGAATGATTAAA
ATTGTGCCTCAAAGTCTATGTACAGTATATATACTTCGAAGGACAACAGC
AGCAGGGGACATTTTTTGGAAGCAAAATAGAACCTTGAAGGCTTGATTat
tgtaaagattttttttattgtgcTGTTTAGTATACTTCTTTATTTTGTCC
GAAATATGTAATATGA
Run BLAST on NCBI

protein sequence of TCONS_00072947-protein

>TCONS_00072947-protein ID=TCONS_00072947-protein|Name=TCONS_00072947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MAPVARLVMAIVHLLLGFIGLPTNGLAAYLIIKTRQFENQSTRLVMYLSI
FDGIGSIIINGASAMYMLAYEEIDCVILLVVHGIVNLSIFCCFSIIVLIG
FDRLLRILYLNDYSLVFSEGRYKVSLIVAAVSTVIQSILIFIGFYMFGYG
YATMFSLPINVIGLVFMIICYCMSISKLKEMNERSRQISNTDRSVVRIAS
LHLAMFVCCFTPTVIWQVVNKLLLSKFLPGYIDILVVFGLYVLVSVHSSF
NGFIFLTVNREARQQILRFFNQVMQRLRRFFNREQVAPAVPVELNN
Run BLAST on NCBI

transcript from alignment at scaffold_86:1182023..1184571+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica)
AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT TTTTGATGGAATTGGTATGTGTTTTGTGTTTAATTATAGATCTATATATT GTATAAAGGCGAATCTCTCTCAGTGCCTCGGTCGAACATTTTCCATATCT ATCTTAAAGTTATATCAAAATCCCAGTGGGGATAGAATATCTACGtttaa agctaaaaaaacaGAAGGGATgagtttttttccaatttttgctaGCGATG AAACCATAGGGCCTTATCCCCAAAGTGATTGAAATTACAAGGTATCTATT TCAAACGGGAGGCTTTGTGACCCAAGTGtaaaaagataataaaaaattga ctgtaAGTAGGTAAGTCTGCGACTGCAGTCGGAggcaacccgaaggctcc tctttcgatatctacccaaaggtaggggagggcgccactctttctccctg gattgctccacttacccttgatccgtctctctTAATTACTGAGCATCCAG CAGAGAGGCACCAAGTACcataccattttgggaatctttggtatgaacCC GCAACCTtccgaaccgtagccggatgccctaccactgcactacggtcgtt TAAATATTGACTGTTGTGTAACCTTTCTCTACCATTTTTCATTTAAGGAT CCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAA ATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAAT TTTCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGA GGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTACGTTT AATGTATTTATTtgtttgggacacactgtacaattaatcaattaaaaaaC GGATAAAGGATTCCTTAAAAGGGAACCAATCTTCGTGGCAACTAATTTTC CTAATTAATTGAACATGAATATTTAAAAAGTCCATTccttttacagaccg gtctccAATTGCGTGCTCTGCGATCAAACTTTTTTCAGCAAATCTTCCAC GCTATTggctaaaagaaaaatgaaaccaTTCCATTGGTACCAGCTGATGC AACggttgaaaaaacatttttttctcgagCGCGCTGCAATTTTataacgt aatcttttttccaagccaAAAGGTGAGATCCCAGCATTAGCAAGAGGAAA CCGGCCTTAAGTGTATACTCTTTTTGGTACCATGTAGAAACCATGTTAGC ATAATTTAGAGTAATTGCCTTAAGGGTGGTTTCAACCGAGCGCTCACTTT AAGCAAATAGACATTAGTAACgaaaagttttatttctttACTTAATGTTT AAGTCGGtatgaaaaatgccaaaaattttgaccatttctctcaaattaaa ggattttaggtatgattcgaagaaaATTGCGTGTATCTCGTTCGGTAAAA TGTGCGCGCGATATACTAAATTGGTCCTTATATggctaaacattttttta aattcagtgTTTTGTGCATGACTACATGACACCAAAATCTCGGGTTTCCT CAGATCGCTCTGTTCGCACTAAATCCTCATATTGCAGCAAGAGAGCTCCt atgattggtttgttttccctattttcccacgcgtttgtttttttgaacCG GTTGCTATTacgaaaagtttaatttttttacttaaTGTTTAGGTCGGTAT AAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTT GATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCA GTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGC ATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTC AAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGT TCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTA CTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGG TTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCC TGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAG GTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGC AGTGCCTGTAGAactaaataattgataaatCTCGGCTTTTATTGGTGTAG ACTACCTTTCATTGAACTTCTTGAATGATTAAAATTGTGCCTCAAAGTCT ATGTACAGTATATATACTTCGAAGGACAACAGCAGCAGGGGACATTTTTT GGAAGCAAAATAGAACCTTGAAGGCTTGATTattgtaaagatttttttta ttgtgcTGTTTAGTATACTTCTTTATTTTGTCCGAAATATGTAATATGA

Coding sequence (CDS) from alignment at scaffold_86:1182023..1184571+

>TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica)
ATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGG
CTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAA
CAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATT
TTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACAT
GTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTA
TTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattggt
tttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTT
CTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAG
TCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGG
TATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCAT
GATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAAC
GCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCT
TTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCA
GGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATA
TTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTC
AATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTT
GAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGG
AACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCG
GTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGG
GCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGT
TTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGA
ATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTA
CGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACC
TATCAATTTTCTGTTGCTTTTcgattattgttttgattggttttGATCGG
TTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGG
TCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAAT
CCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACA
ATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTG
TTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGAC
AGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTG
GCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAA
TAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTG
TGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTC
ATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTT
CAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTG
CACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCGGTTGCTAGA
CTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGGGCTTCCTAC
AAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGTTTGAAAATC
AATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGAATTGGATCC
ATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAAAT
TGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAATTT
TCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGAGG
ATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTCGGTATAA
AGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTTGA
TTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCAGT
CTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGCAT
GTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTCAA
ATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGTTC
GTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTACT
ATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGGTT
TATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCCTG
ACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAGGT
AATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGCAG
TGCCTGTAGAactaaataattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045255XLOC_045255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072947-proteinTCONS_00072947-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571Clytia hemisphaericaexon
TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1182023..1184571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.105499 0 0.100578 0 0 0 0 0 0.156087 0 0 0 0.880915 0.872813 0.166322 0.609156 1.96659 1.82623 0.044849 0.366969 0.167986 0.187405 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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