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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=1116bp AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT TTTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACA TGTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGT ATTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattgg ttttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTT TCTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACA GTCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGG GTATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCA TGATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAA CGCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATC TTTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGC AGGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGAT ATTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTT CAATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCT TGAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGG GAACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgataaatCTC GGCTTTTATTGGTGTAGACTACCTTTCATTGAACTTCTTGAATGATTAAA ATTGTGCCTCAAAGTCTATGTACAGTATATATACTTCGAAGGACAACAGC AGCAGGGGACATTTTTTGGAAGCAAAATAGAACCTTGAAGGCTTGATTat tgtaaagattttttttattgtgcTGTTTAGTATACTTCTTTATTTTGTCC GAAATATGTAATATGA Run BLAST on NCBI protein sequence of TCONS_00072947-protein >TCONS_00072947-protein ID=TCONS_00072947-protein|Name=TCONS_00072947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MAPVARLVMAIVHLLLGFIGLPTNGLAAYLIIKTRQFENQSTRLVMYLSI FDGIGSIIINGASAMYMLAYEEIDCVILLVVHGIVNLSIFCCFSIIVLIG FDRLLRILYLNDYSLVFSEGRYKVSLIVAAVSTVIQSILIFIGFYMFGYG YATMFSLPINVIGLVFMIICYCMSISKLKEMNERSRQISNTDRSVVRIAS LHLAMFVCCFTPTVIWQVVNKLLLSKFLPGYIDILVVFGLYVLVSVHSSF NGFIFLTVNREARQQILRFFNQVMQRLRRFFNREQVAPAVPVELNN Run BLAST on NCBI transcript from alignment at scaffold_86:1182023..1184571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica) AATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTG
GCTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAA
ACAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTAT
TTTTGATGGAATTGGTATGTGTTTTGTGTTTAATTATAGATCTATATATT
GTATAAAGGCGAATCTCTCTCAGTGCCTCGGTCGAACATTTTCCATATCT
ATCTTAAAGTTATATCAAAATCCCAGTGGGGATAGAATATCTACGtttaa
agctaaaaaaacaGAAGGGATgagtttttttccaatttttgctaGCGATG
AAACCATAGGGCCTTATCCCCAAAGTGATTGAAATTACAAGGTATCTATT
TCAAACGGGAGGCTTTGTGACCCAAGTGtaaaaagataataaaaaattga
ctgtaAGTAGGTAAGTCTGCGACTGCAGTCGGAggcaacccgaaggctcc
tctttcgatatctacccaaaggtaggggagggcgccactctttctccctg
gattgctccacttacccttgatccgtctctctTAATTACTGAGCATCCAG
CAGAGAGGCACCAAGTACcataccattttgggaatctttggtatgaacCC
GCAACCTtccgaaccgtagccggatgccctaccactgcactacggtcgtt
TAAATATTGACTGTTGTGTAACCTTTCTCTACCATTTTTCATTTAAGGAT
CCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAA
ATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAAT
TTTCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGA
GGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTACGTTT
AATGTATTTATTtgtttgggacacactgtacaattaatcaattaaaaaaC
GGATAAAGGATTCCTTAAAAGGGAACCAATCTTCGTGGCAACTAATTTTC
CTAATTAATTGAACATGAATATTTAAAAAGTCCATTccttttacagaccg
gtctccAATTGCGTGCTCTGCGATCAAACTTTTTTCAGCAAATCTTCCAC
GCTATTggctaaaagaaaaatgaaaccaTTCCATTGGTACCAGCTGATGC
AACggttgaaaaaacatttttttctcgagCGCGCTGCAATTTTataacgt
aatcttttttccaagccaAAAGGTGAGATCCCAGCATTAGCAAGAGGAAA
CCGGCCTTAAGTGTATACTCTTTTTGGTACCATGTAGAAACCATGTTAGC
ATAATTTAGAGTAATTGCCTTAAGGGTGGTTTCAACCGAGCGCTCACTTT
AAGCAAATAGACATTAGTAACgaaaagttttatttctttACTTAATGTTT
AAGTCGGtatgaaaaatgccaaaaattttgaccatttctctcaaattaaa
ggattttaggtatgattcgaagaaaATTGCGTGTATCTCGTTCGGTAAAA
TGTGCGCGCGATATACTAAATTGGTCCTTATATggctaaacattttttta
aattcagtgTTTTGTGCATGACTACATGACACCAAAATCTCGGGTTTCCT
CAGATCGCTCTGTTCGCACTAAATCCTCATATTGCAGCAAGAGAGCTCCt
atgattggtttgttttccctattttcccacgcgtttgtttttttgaacCG
GTTGCTATTacgaaaagtttaatttttttacttaaTGTTTAGGTCGGTAT
AAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTT
GATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCA
GTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGC
ATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTC
AAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGT
TCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTA
CTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGG
TTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCC
TGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAG
GTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGC
AGTGCCTGTAGAactaaataattgataaatCTCGGCTTTTATTGGTGTAG
ACTACCTTTCATTGAACTTCTTGAATGATTAAAATTGTGCCTCAAAGTCT
ATGTACAGTATATATACTTCGAAGGACAACAGCAGCAGGGGACATTTTTT
GGAAGCAAAATAGAACCTTGAAGGCTTGATTattgtaaagatttttttta
ttgtgcTGTTTAGTATACTTCTTTATTTTGTCCGAAATATGTAATATGA Coding sequence (CDS) from alignment at scaffold_86:1182023..1184571+ >TCONS_00072947 ID=TCONS_00072947|Name=TCONS_00072947|organism=Clytia hemisphaerica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_86:1182023..1184571+ (Clytia hemisphaerica) ATGGCTCCGGTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGG CTTTATTGGGCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAA CAAGACAGTTTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATT TTTGATGGAATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACAT GTTAGCTTACGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTA TTGTCAACCTATCAATTTTCTGTTGCTTTTcgattattgttttgattggt tttGATCGGTTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTT CTCTGAAGGTCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAG TCATCCAATCCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGG TATGCAACAATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCAT GATCATCTGTTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAAC GCAGCCGACAGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCT TTACACTTGGCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCA GGTGGTTAATAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATA TTTTGGTTGTGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTC AATGGTTTCATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTT GAGATTCTTCAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGG AACAAGTTGCACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCG GTTGCTAGACTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGG GCTTCCTACAAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGT TTGAAAATCAATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGA ATTGGATCCATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTA CGAAGAAATTGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACC TATCAATTTTCTGTTGCTTTTcgattattgttttgattggttttGATCGG TTATTGAGGATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGG TCGGTATAAAGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAAT CCATCTTGATTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACA ATGTTCAGTCTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTG TTATTGCATGTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGAC AGATTTCAAATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTG GCAATGTTCGTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAA TAAGCTACTATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTG TGTTTGGTTTATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTC ATCTTCCTGACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTT CAACCAGGTAATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTG CACCAGCAGTGCCTGTAGAactaaataattgaATGGCTCCGGTTGCTAGA CTAGTTATGGCTATCGTTCACTTACTCCTTGGCTTTATTGGGCTTCCTAC AAATGGATTGGCAGCTTATCTAATCATCAAAACAAGACAGTTTGAAAATC AATCTACCAGATTGGTCATGTATCTTTCTATTTTTGATGGAATTGGATCC ATTATCATAAATGGTGCATCAGCTATGTACATGTTAGCTTACGAAGAAAT TGATTGCGTCATTCTTTTGGTTGTACACGGTATTGTCAACCTATCAATTT TCTGTTGCTTTTcgattattgttttgattggttttGATCGGTTATTGAGG ATCTTGTACCTGAATGATTACAGTTTGGTTTTCTCTGAAGGTCGGTATAA AGTTTCTCTCATTGTCGCCGCCGTGTCTACAGTCATCCAATCCATCTTGA TTTTTATCGGGTTTTATATGTTCGGCTACGGGTATGCAACAATGTTCAGT CTCCCGATTAACGTTATCGGGTTAGTATTCATGATCATCTGTTATTGCAT GTCGATCAGCAAGTTGAAAGAAATGAATGAACGCAGCCGACAGATTTCAA ATACCGATCGCAGCGTAGTCCGTATCGCATCTTTACACTTGGCAATGTTC GTTTGTTGTTTTACTCCGACTGTGATCTGGCAGGTGGTTAATAAGCTACT ATTATCTAAGTTTTTACCAGGTTATATTGATATTTTGGTTGTGTTTGGTT TATATGTTTTGGTATCTGTCCATTCGTCTTTCAATGGTTTCATCTTCCTG ACCGTCAATCGTGAAGCACGTCAACAAATCTTGAGATTCTTCAACCAGGT AATGCAAAGATTAAGGCGATTTTTCAATCGGGAACAAGTTGCACCAGCAG TGCCTGTAGAactaaataattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1491911889:1182023..1182186 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1510915933:1182023..1182186 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186 | TCONS_00072947-exon-scaffold_86-1575043694:1182023..1182186 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1491911889:1182770..1182964 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1510915933:1182770..1182964 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964 | TCONS_00072947-exon-scaffold_86-1575043694:1182770..1182964 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1491911889:1183815..1184571 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1510915933:1183815..1184571 | Clytia hemisphaerica | exon |
TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571 | TCONS_00072947-exon-scaffold_86-1575043694:1183815..1184571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1182023..1184571 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|