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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072939 ID=TCONS_00072939|Name=TCONS_00072939|organism=Clytia hemisphaerica|type=transcript|length=1921bp
CGGAAATAATATTAAAATACGATCAGCATATAAAAAGTGCAATTGACCCT
GACATTAAATCAGTTTGGATCTGACTTTTCACCTGTTTATTGGTGAGCGA
ATAATTGCTGGTGCTAAAGAGCTGAAGTTATTGGGGTGATTACACATTCA
AAGAGCTCTAGTTGCGGTGAACGTCGATAAGACTtgatatcaaataaaaa
agcagTTGCAATCAGTACTACTGTTCGTTTACTTATTCACGTAATTTATC
AACTGTGAAGAACTCGTTCTTTAAATCTAGGTAGCGTGTTTTACTAAGCA
GAGACTTGCCAGGAAGCAATAGGTGAATCACGCGGCATATCAGAACACTC
ATCTCAAAACTCGTTACCAGAAATCAAATCCTTTTTGTGCGCAGTTTAAA
GCATCTACAATTTTCATAAAGGAACATTCCACCCAATAGAATGTCCACAC
ATGCAACCAATCGAATCTCCATCCTTGGTGCCGGTGCTGGAGGTTGTGCA
TTAGCATACCACCTCATCAAAACTGGCTATGAGGTACTTCTATACCAAGA
CAAAGACCATCTCACCAGCGTTGAAGAAATCATGAAAACACGTGAAATCA
AAGCTGTGGAGAGTTACGATGGCTTCAAAAGTGCTTTACACGGTAAATGT
AAAATCACGTGCTTTACAACCAGTATAAAACAAGCAGTCCAATTCAGTGA
AGTTTTGATCCTAGTCGTTCCAGCGTACGGACAAGTCAATATCTTCCAAG
CTGCCCTACCTTACCTGACTCCAAATCATATCTTCTTGAGCTTACCTGGT
AATTTCGCTATCTTTGATTACCTGAAGTCTATCCGtgaatcgaacgtcaa
aattgaTTTTCCTGTATCACACATCGCGGAAACTCCAATCCCATGTACCT
TCGTTGAAAGCAGTATCATTCCGTACGCTTGCCGTAGAGTGCAGAAGAAC
GGCATCTTTATAGGTGCAATCAAGCAATTTATATCAGTCGGCGCTTACCC
TAAAAGCAAAGCAGAATCTACATACGAGCGCCTTGATGCCATTTTTGAAT
CCATCGACGTTCGATTAGAGAAAACCAACCTCTTAGCAACCACTTTCTAC
AATTCGAATCTTATCTTACATCCAACCATCGTCATGTATAATGCTGGACA
CATCAAATGCCAAAACAAAGGATTCCGTTTTTATAAAGATGGCGTCTCTC
CTCTAGTTTGCAAAATATTTGAATCACTAGATAAAGAGATGCTTCTCCTT
GGTCACAGCTGTGGATTCCATCTTGAATCATTCGCATCATATTACAGACG
TTACTATGGTGATAAAAACCCTAATAATACTCTCAGTGCTTTCTTTCAAA
ATGCACATTTCCTTCATTTCGTAAAAGCGCCCAACGATTTAAACGGACGG
TTCATATCTGAAGACCTTCAGTTTGTGCTTCTTCCTTTGATCCGATACTT
AGCTAACAGAAACCAGGTTCCAACACCACTGGCTGAATCATTGATCGTTT
CACTACAATGTATGCTGGGACATAACATTCATCCTTTGCGCGAATTACCG
GAGGATGAGTGGGCGATCGTTGCTGCGTCatgaaatactttttttatctt
ATAATGAGAAAGAACACTTGACTTAAATCAAATTATCCATGATTTAGACG
TTGAGCTAAGTCAATCGAGTCAGTCTGGTTGGAAAGCTGACTAAAATTCA
AATTCGTTCACTTCAGCAAAGTGCATTAAAACCATATACTCAATGGAGAG
ACTTTTTATTCTTGAATATTCAACATCGAACACCGTTGGGTTTAAACCGA
GTATTATAAAAGTTTTAACCAATGCCTTTAAAGAAATGtaaatacaaatt
tttttattgtaaatttgaTTAAGACTTTATTtataaatatctaaaaattt
taagcgAAGAGAAATTCTTTT Run BLAST on NCBI protein sequence of TCONS_00072939-protein >TCONS_00072939-protein ID=TCONS_00072939-protein|Name=TCONS_00072939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MSTHATNRISILGAGAGGCALAYHLIKTGYEVLLYQDKDHLTSVEEIMKT
REIKAVESYDGFKSALHGKCKITCFTTSIKQAVQFSEVLILVVPAYGQVN
IFQAALPYLTPNHIFLSLPGNFAIFDYLKSIRESNVKIDFPVSHIAETPI
PCTFVESSIIPYACRRVQKNGIFIGAIKQFISVGAYPKSKAESTYERLDA
IFESIDVRLEKTNLLATTFYNSNLILHPTIVMYNAGHIKCQNKGFRFYKD
GVSPLVCKIFESLDKEMLLLGHSCGFHLESFASYYRRYYGDKNPNNTLSA
FFQNAHFLHFVKAPNDLNGRFISEDLQFVLLPLIRYLANRNQVPTPLAES
LIVSLQCMLGHNIHPLRELPEDEWAIVAAS Run BLAST on NCBI transcript from alignment at scaffold_86:1072203..1074238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072939 ID=TCONS_00072939|Name=TCONS_00072939|organism=Clytia hemisphaerica|type=transcript|length=2036bp|location=Sequence derived from alignment at scaffold_86:1072203..1074238+ (Clytia hemisphaerica)
CGGAAATAATATTAAAATACGATCAGCATATAAAAAGTGCAATTGACCCT
GACATTAAATCAGTTTGGATCTGACTTTTCACCTGTTTATTGGTGAGCGA
ATAATTGCTGGTGCTAAAGAGCTGAAGTTATTGGGGTGATTACACATTCA
AAGAGCTCTAGTTGCGGTGAACGTCGATAAGACTtgatatcaaataaaaa
agcagTTGCAATCAGTACTACTGTTCGTTTACTTATTCACGTAATTTATC
AACTGTGAAGAACTCGTTCTTTAAATCTAGGTAGCGTGTTTTACTAAGCA
GAGACTTGCCAGGAAGCAATAGGTGAATCACGCGGCATATCAGAACACTC
ATCTCAAAACTCGTTACCAGAAATCAAATCCTTTTTGTGCGCAGTTTAAA
GCATCTACAATTTTCATAAAGGAACATTCCACCCAATAGAATGTCCACAC
ATGCAACCAATCGAATCTCCATCCTTGGTGCCGGTGCTGGAGGTTGTGCA
TTAGCATACCACCTCATCAAAACTGGCTATGAGGTACTTCTATACCAAGA
CAAAGACCATCTCACCAGCGTTGAAGAAATCATGAAAACACGTGAAATCA
AAGCTGTGGAGAGTTACGATGGCTTCAAAAGTGCTTTACACGGTAAATGT
AAAATCACGTGCTTTACAACCAGTATAAAACAAGCAGTCCAATTCAGTGA
AGTTTTGATCCTAGTCGTTCCAGCGTACGGACAAGTCAATATCTTCCAAG
CTGCCCTACCTTACCTGACTCCAAATCATATCTTCTTGAGCTTACCTGGT
AATTTCGCTATCTTTGATTACCTGAAGTCTATCCGtgaatcgaacgtcaa
aattgaTTTTCCTGTATCACACATCGCGGGNGACTCCAAATCATATCTTC
TTGAGCTTACCTGGTAATTTCGCTATCTTTGATTACCTGAAGTCTATCCG
tgaatcgaacgtcaaaattgaTTTTCCTGTATCCCACATCGCGGAAACTC
CAATCCCATGTACCTTCGTTGAAAGCAGTATCATTCCGTACGCTTGCCGT
AGAGTGCAGAAGAACGGCATCTTTATAGGTGCAATCAAGCAATTTATATC
AGTCGGCGCTTACCCTAAAAGCAAAGCAGAATCTACATACGAGCGCCTTG
ATGCCATTTTTGAATCCATCGACGTTCGATTAGAGAAAACCAACCTCTTA
GCAACCACTTTCTACAATTCGAATCTTATCTTACATCCAACCATCGTCAT
GTATAATGCTGGACACATCAAATGCCAAAACAAAGGATTCCGTTTTTATA
AAGATGGCGTCTCTCCTCTAGTTTGCAAAATATTTGAATCACTAGATAAA
GAGATGCTTCTCCTTGGTCACAGCTGTGGATTCCATCTTGAATCATTCGC
ATCATATTACAGACGTTACTATGGTGATAAAAACCCTAATAATACTCTCA
GTGCTTTCTTTCAAAATGCACATTTCCTTCATTTCGTAAAAGCGCCCAAC
GATTTAAACGGACGGTTCATATCTGAAGACCTTCAGTTTGTGCTTCTTCC
TTTGATCCGATACTTAGCTAACAGAAACCAGGTTCCAACACCACTGGCTG
AATCATTGATCGTTTCACTACAATGTATGCTGGGACATAACATTCATCCT
TTGCGCGAATTACCGGAGGATGAGTGGGCGATCGTTGCTGCGTCatgaaa
tactttttttatcttATAATGAGAAAGAACACTTGACTTAAATCAAATTA
TCCATGATTTAGACGTTGAGCTAAGTCAATCGAGTCAGTCTGGTTGGAAA
GCTGACTAAAATTCAAATTCGTTCACTTCAGCAAAGTGCATTAAAACCAT
ATACTCAATGGAGAGACTTTTTATTCTTGAATATTCAACATCGAACACCG
TTGGGTTTAAACCGAGTATTATAAAAGTTTTAACCAATGCCTTTAAAGAA
ATGtaaatacaaatttttttattgtaaatttgaTTAAGACTTTATTtata
aatatctaaaaattttaagcgAAGAGAAATTCTTTT Coding sequence (CDS) from alignment at scaffold_86:1072203..1074238+ >TCONS_00072939 ID=TCONS_00072939|Name=TCONS_00072939|organism=Clytia hemisphaerica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_86:1072203..1074238+ (Clytia hemisphaerica)
ATGTCCACACATGCAACCAATCGAATCTCCATCCTTGGTGCCGGTGCTGG
AGGTTGTGCATTAGCATACCACCTCATCAAAACTGGCTATGAGGTACTTC
TATACCAAGACAAAGACCATCTCACCAGCGTTGAAGAAATCATGAAAACA
CGTGAAATCAAAGCTGTGGAGAGTTACGATGGCTTCAAAAGTGCTTTACA
CGGTAAATGTAAAATCACGTGCTTTACAACCAGTATAAAACAAGCAGTCC
AATTCAGTGAAGTTTTGATCCTAGTCGTTCCAGCGTACGGACAAGTCAAT
ATCTTCCAAGCTGCCCTACCTTACCTGACTCCAAATCATATCTTCTTGAG
CTTACCTGGTAATTTCGCTATCTTTGATTACCTGAAGTCTATCCGtgaat
cgaacgtcaaaattgaTTTTCCTGTATCACACATCGCGGAAACTCCAATC
CCATGTACCTTCGTTGAAAGCAGTATCATTCCGTACGCTTGCCGTAGAGT
GCAGAAGAACGGCATCTTTATAGGTGCAATCAAGCAATTTATATCAGTCG
GCGCTTACCCTAAAAGCAAAGCAGAATCTACATACGAGCGCCTTGATGCC
ATTTTTGAATCCATCGACGTTCGATTAGAGAAAACCAACCTCTTAGCAAC
CACTTTCTACAATTCGAATCTTATCTTACATCCAACCATCGTCATGTATA
ATGCTGGACACATCAAATGCCAAAACAAAGGATTCCGTTTTTATAAAGAT
GGCGTCTCTCCTCTAGTTTGCAAAATATTTGAATCACTAGATAAAGAGAT
GCTTCTCCTTGGTCACAGCTGTGGATTCCATCTTGAATCATTCGCATCAT
ATTACAGACGTTACTATGGTGATAAAAACCCTAATAATACTCTCAGTGCT
TTCTTTCAAAATGCACATTTCCTTCATTTCGTAAAAGCGCCCAACGATTT
AAACGGACGGTTCATATCTGAAGACCTTCAGTTTGTGCTTCTTCCTTTGA
TCCGATACTTAGCTAACAGAAACCAGGTTCCAACACCACTGGCTGAATCA
TTGATCGTTTCACTACAATGTATGCTGGGACATAACATTCATCCTTTGCG
CGAATTACCGGAGGATGAGTGGGCGATCGTTGCTGCGTCatgaATGTCCA
CACATGCAACCAATCGAATCTCCATCCTTGGTGCCGGTGCTGGAGGTTGT
GCATTAGCATACCACCTCATCAAAACTGGCTATGAGGTACTTCTATACCA
AGACAAAGACCATCTCACCAGCGTTGAAGAAATCATGAAAACACGTGAAA
TCAAAGCTGTGGAGAGTTACGATGGCTTCAAAAGTGCTTTACACGGTAAA
TGTAAAATCACGTGCTTTACAACCAGTATAAAACAAGCAGTCCAATTCAG
TGAAGTTTTGATCCTAGTCGTTCCAGCGTACGGACAAGTCAATATCTTCC
AAGCTGCCCTACCTTACCTGACTCCAAATCATATCTTCTTGAGCTTACCT
GGTAATTTCGCTATCTTTGATTACCTGAAGTCTATCCGtgaatcgaacgt
caaaattgaTTTTCCTGTATCACACATCGCGGAAACTCCAATCCCATGTA
CCTTCGTTGAAAGCAGTATCATTCCGTACGCTTGCCGTAGAGTGCAGAAG
AACGGCATCTTTATAGGTGCAATCAAGCAATTTATATCAGTCGGCGCTTA
CCCTAAAAGCAAAGCAGAATCTACATACGAGCGCCTTGATGCCATTTTTG
AATCCATCGACGTTCGATTAGAGAAAACCAACCTCTTAGCAACCACTTTC
TACAATTCGAATCTTATCTTACATCCAACCATCGTCATGTATAATGCTGG
ACACATCAAATGCCAAAACAAAGGATTCCGTTTTTATAAAGATGGCGTCT
CTCCTCTAGTTTGCAAAATATTTGAATCACTAGATAAAGAGATGCTTCTC
CTTGGTCACAGCTGTGGATTCCATCTTGAATCATTCGCATCATATTACAG
ACGTTACTATGGTGATAAAAACCCTAATAATACTCTCAGTGCTTTCTTTC
AAAATGCACATTTCCTTCATTTCGTAAAAGCGCCCAACGATTTAAACGGA
CGGTTCATATCTGAAGACCTTCAGTTTGTGCTTCTTCCTTTGATCCGATA
CTTAGCTAACAGAAACCAGGTTCCAACACCACTGGCTGAATCATTGATCG
TTTCACTACAATGTATGCTGGGACATAACATTCATCCTTTGCGCGAATTA
CCGGAGGATGAGTGGGCGATCGTTGCTGCGTCatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072939-exon-scaffold_86-1491911889:1072203..1073074 | TCONS_00072939-exon-scaffold_86-1491911889:1072203..1073074 | Clytia hemisphaerica | exon |
| TCONS_00072939-exon-scaffold_86-1510915933:1072203..1073074 | TCONS_00072939-exon-scaffold_86-1510915933:1072203..1073074 | Clytia hemisphaerica | exon |
| TCONS_00072939-exon-scaffold_86-1575043694:1072203..1073074 | TCONS_00072939-exon-scaffold_86-1575043694:1072203..1073074 | Clytia hemisphaerica | exon |
| TCONS_00072939-exon-scaffold_86-1491911889:1073190..1074238 | TCONS_00072939-exon-scaffold_86-1491911889:1073190..1074238 | Clytia hemisphaerica | exon |
| TCONS_00072939-exon-scaffold_86-1510915933:1073190..1074238 | TCONS_00072939-exon-scaffold_86-1510915933:1073190..1074238 | Clytia hemisphaerica | exon |
| TCONS_00072939-exon-scaffold_86-1575043694:1073190..1074238 | TCONS_00072939-exon-scaffold_86-1575043694:1073190..1074238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1072203..1074238 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0046168 | glycerol-3-phosphate catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0050662 | coenzyme binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0051287 | NAD binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046168 |
glycerol-3-phosphate catabolic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0050662 |
coenzyme binding |
| molecular_function |
GO:0051287 |
NAD binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Blast
The following BLAST results are available for this feature:
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