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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=transcript|length=2215bpRun BLAST on NCBI protein sequence of TCONS_00072936-protein >TCONS_00072936-protein ID=TCONS_00072936-protein|Name=TCONS_00072936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MDDLMYLERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTTRun BLAST on NCBI transcript from alignment at scaffold_86:1043605..1053205+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=transcript|length=9601bp|location=Sequence derived from alignment at scaffold_86:1043605..1053205+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1043605..1053205+ >TCONS_00072936 ID=TCONS_00072936|Name=TCONS_00072936|organism=Clytia hemisphaerica|type=CDS|length=17520bp|location=Sequence derived from alignment at scaffold_86:1043605..1053205+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072936 vs. Swiss-Prot (Human)
Match: RMP (Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens GN=URI1 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 8.064e-25 Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 2
Query: 89 LERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTTQSTMVPVGDIAFLPGNIVHTNEIMVLLGDNWFVERSAKQASEIADRRLKMVEKQLDDLVKEHEHIKSNLTYADQFS----MDNETKEIKETVPEDYQSTKGKRKIAHKAKHNVVPRAVSFKNTDAAIKSLGKDLMTKKD 625
+ RL+ Q+K + + +R K + DY+ L +RL TLPD + + MVP G AF+PG +VHTNE+ VLLGDNWF + SAKQA + + R + V K +DDL K ++ +S + + + + +I+E + D++ K K +IAHK P+ D A KDL+ K+
Sbjct: 30 VARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFE-FKAKHRIAHKPHSK--PKTSDIFEADIANDVKSKDLLADKE 209 The following BLAST results are available for this feature:
BLAST of TCONS_00072936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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