TCONS_00072936-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072936-protein
Unique NameTCONS_00072936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072936-protein ID=TCONS_00072936-protein|Name=TCONS_00072936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MDDLMYLERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTT
QSTMVPVGDIAFLPGNIVHTNEIMVLLGDNWFVERSAKQASEIADRRLKM
VEKQLDDLVKEHEHIKSNLTYADQFSMDNETKEIKETVPEDYQSTKGKRK
IAHKAKHNVVPRAVSFKNTDAAIKSLGKDLMTKKDSVTGQSSTDQTIDHE
ELMSRLNELEREEQEAEQREHDKIMESIMEGSYVPPNATDDNPRKSSVTN
GAKRQPRRHVKFHNLENEPLSSEDEEERLIRFDHTNLPPLERSLSDSDLA
KESTIKTPADIYEQFYCGSAHLSDSDDSKPLKSILKKDSRSGSSENLRLK
PILKSSPEHRPGTPDNLQDEPQSILKTPPDTQASDKRPGTPEHVLDGPSP
TPQSILKPGGFTKEEIPMVEDIDPSDSSEIRPILKSHETPLFIPPTATIP
TYGDDSQPPSRPSILKHSTNADNSNPNTRSFSPEAAMAGDSNSIWRNDSN
SPARSARIVSQEPQHPNTSANESFGEPRPILKAQPQHNPQSKMAFSGTIV
ERDTAEATSTTSRQNKPSSNKPMSKFKASRMKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045248XLOC_045248Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072936TCONS_00072936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004127Prefoldin_subunit_alpha
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..118
NoneNo IPR availableCOILSCoilCoilcoord: 192..226
NoneNo IPR availableGENE3D1.10.287.370coord: 2..223
e-value: 6.4E-29
score: 100.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..583
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..301
NoneNo IPR availableSUPERFAMILY46579Prefoldincoord: 16..120
IPR004127Prefoldin alpha-likePFAMPF02996Prefoldincoord: 27..122
e-value: 9.8E-19
score: 67.3

Blast
[Close]
BLAST of TCONS_00072936-protein vs. Swiss-Prot (Human)
Match: RMP (Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens GN=URI1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.002e-25
Identity = 65/183 (35.52%), Postives = 100/183 (54.64%), Query Frame = 0 
Query:    7 LERLKAGQQKFLEDNLQRQGIRKNLVEDYSKLIKRLKTLPDTTTQSTMVPVGDIAFLPGNIVHTNEIMVLLGDNWFVERSAKQASEIADRRLKMVEKQLDDLVKEHEHIKSNLTYADQFS----MDNETKEIKETVPEDYQSTKGKRKIAHKAKHNVVPRAVSFKNTDAAIKSLGKDLMTKKD 185
            + RL+  Q+K + +  +R    K +  DY+ L +RL TLPD  + + MVP G  AF+PG +VHTNE+ VLLGDNWF + SAKQA  + + R + V K +DDL K  ++ +S + + +          +  +I+E +  D++  K K +IAHK      P+       D A     KDL+  K+
Sbjct:   30 VARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFE-FKAKHRIAHKPHSK--PKTSDIFEADIANDVKSKDLLADKE 209
The following BLAST results are available for this feature:
BLAST of TCONS_00072936-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RMP1.002e-2535.52Unconventional prefoldin RPB5 interactor 1 OS=Homo... [more]
back to top