TCONS_00072932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072932
Unique NameTCONS_00072932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072932 ID=TCONS_00072932|Name=TCONS_00072932|organism=Clytia hemisphaerica|type=transcript|length=746bp
ttgaaatataaacaaatcaacatagaaaaaaatagaaaataaatagATTA
TGGCTAGTACTGGTATAGAGAAGAGATTATTTTTCACAGCTTTACCAGAC
CTGTCTATGTTAACAGCATTTCGTGCAGCTTTTACATCGAAACAGGAGAT
TATTGGTATTCAACCACCTTGTTGCAGAGAACTAATATTTACACTACCAG
AAATTTTGGTTTCACCAGCTTTCGACAACAAATCTAACCTATTCATTATT
GCTGAGaaaaagctTTCATCATCTGCTGACTTCTCCAAAACTCTTGAACG
TTTACAAATAAAGCTTTGTACCAGACTAGAAGTTGATGCAGAATTGTTCG
AGTACTGCTTGACTTATACTCTTTATCAAAAGTTGGCACCGTTTTGGAAT
AAAACCAATTCATTCCTGGTCAGAGGTCGAAATTTCCTTCAAGTTAAAGA
CAAGCTTTCTGCAACCGGTCTTGAACTTTACGTGACAGACAAGATTTGTA
TTGCTATGGAACCATTCCAGATTCGATCTCCTCCAATTGAGGTGGAAGAT
TTCACGATTGATTTTAAATCTCTATGGAATTTCAAACGTGATTCATCAGC
TAAGATTTCTGGTCATGCGATTGAAGACTCCATCTGTTATGTTTTGCCAA
GTTTTCGTAAATGTCACATAACATCGATAACACATTCTATTCCAAAAAAT
ACGCCTTTCAAAGACTATAATGCTTTAAAACAGCATTGGAAACTAT
Run BLAST on NCBI

transcript from alignment at scaffold_86:974577..979088+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072932 ID=TCONS_00072932|Name=TCONS_00072932|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at scaffold_86:974577..979088+ (Clytia hemisphaerica)
ttgaaatataaacaaatcaacatagaaaaaaatagaaaataaatagATTA
TGGCTAGTACTGGTATAGAGAAGAGATTATTTTTCACAGCTTTACCAGAC
CTGTCTATGTTAACAGCATTTCGTGCAGCTTTTACATCGAAACAGGAGAT
TATTGGTATTCAACCACCTTGTTGCAGGTACATATTAGTTTTTGTTATGA
tttattttccttggaaaatacacaatttcatttttcatcattttacaaCT
TAGTTTAGACTGTTTAGTCTAATTGCAGCAGTACAATTCTGAAGTTTTCA
ACTACACAATGGTTAGCGATTTTCCTTGTTAAATATACAGAACACTAACT
AGTTTAGTAAAGATATTTGTAGAAGCAGCAAAATACATGTTAAATGTAAT
AATGTGTTGTATATTTAATAGAATCATTAATGAAAAAATTTACCTTACCT
GGAAATTTAATTTCGTCATTTAAATCTTTTAGAGAACTAATATTTACACT
ACCAGAAATTTTGGTTTCACCAGCTTTCGACAACAAATCTAACCTATTCA
TTATTGCTGAGGTAAGCTTCTTCTTCAAGGTCTCTCCTTATTTGATCTGC
CTTTGAAAGCATACCAGATGTACCAATCTATTGCAtattattttgaaaca
aattgaAATTTGTTTAAATATAATCTGATATTCACGATTGGAAAAttcca
aaaagatcaaaaatgaaaatgaacatAGTCATCTGCGCtacagattatat
tgagacagactttgaAATCAAGAAGATACAAAAACCTGGCGTGAAAGTCT
TTTCTTTCAATTCTCATGTTATCTTTTCTTAGTTTATAACTTAAGTTAAT
AATTGACTTAATCGTTTTGGTCATCTTGACAATGGTCTTTACAAgtaaaa
aacaaagtaaaaaaatgtacagcaatttttttgggaattcaagaaaaaat
atctTCTCAAGGATTTAATTGCACAAATGGCAGTTTAGAAATAATAAATT
TCATGGTAAAGAAATAACAAATTTCGCGAAAGTATAAACATTGGAAAGCA
GTGATAGGCTTCCAGACCAAACTGTGTTTTTATGTTTGATGTTTTTTGGT
ATGCtaaatctttcttcttttttttcagaaaaagctTTCATCATCTGCTG
ACTTCTCCAAAACTCTTGAACGTTTACAAATAAAGGTTTGATATGtcata
tttatttcttttccatGTACCCTTTGAATCAGTGGCACTAATGACGAGAC
AGGCAGATATTTCAGTTTGATATGAGGTCCTGCATTGAAAAAGGATTGCA
GATTTTTGCCAAAGTATTATATTTATGCAAAACCGTCAGTTTTGATTTCT
CAATACTGGATTGATTTATATTTCCAATATATAACGATTGCTTTAATTTT
AACTTAGAATTGCTattaacattttcttattttgattatGTCCATTGTCT
TCTTAGCTTTGTACCAGACTAGAAGTTGATGCAGAATTGTTCGAGTACTG
CTTGACTTATACTCTTTATCAAAAGTTGGCACCGTTTTGGAATAAAACCA
ATTCATTCCTGGTCAGAGGTAAATCAGTCAAGCTACTTGGTTAATATCAT
CTTATTTCATAAAAGTATTCAAAGTTGCTTAAAGAATATATTGTAATTCc
aaattgaaaaacttaattgAATAAATAAACTCTTTTCTTCTTCAGGTCGA
AATTTCCTTCAAGTTAAAGACAAGCTTTCTGCAACCGGTAAGAATGGTTC
AACTCTATACTGACTCATGGAAGGTATGTGAGAAAACCTCCAATAGCACA
CAGCTATGCAAACGTCacaattattacttttaacatttgacataaattca
atcccacaatccttttcatcttgattcgtaatgcgtACAAGTTATTAATT
TTGTATTGTCGATGAGCGTAATTAActtgcaaaagcaattaatgcaaagg
atgatgaggttaaaactcggacaaacagtaattttgatgtctatttttag
agtCACTGCGGTATGCTAGTGAAAGAAACTCATGTTATCTTCAATATAGC
TAAGCTCTGGAATGACTTAAGTCAGCTTTGAACTCCTATCCAACACCTTT
CATTCGAATTTTTCGTAACAGGTCTTGAACTTTACGTGACAGACAAGATT
TGTATTGCTATGGAACCATTCCAGATTCGATCTCCTCCAATTGAGGTTAG
TATCATTATCTCAATTTTCAGtaacttcaaattttttgagttttattaaT
GTGCCAGAAATCTCTGTTGCTCCAAAAGCGATCCTCTATGGATTAGAAAC
GACACTAGGttaaaatcattttgatttgtctCTAATGGGAACCAAAACAT
GATCTTTAACTTATATAGACTTCTGCGACAAAAACGAATAGCTTTTAGAT
TTATCTAGATGCTGACTGACTTAGAACGACACTAAATTAGCACTTTAGAA
CTGCAGGCTTTTCATAATCGTTTCTGTCACGTATACAATAAACTGACTAA
TGatgatttttaggaaaatacggtcttaaaaaatttaattagTGACAGTT
TTCTTCTTcccaaatgtttttaaaatcataATCAATCACTTTTCAAGTAA
GGTTTGGAGAAGTCcactttatctttttttttttcaaagctaAGACTTTC
ATTGAGatcaaatttgatcaaattaaTTCTGatataatttacattcattc
tAACAGGTGGAAGATTTCACGATTGATTTTAAATCTCTATGGAATTTCAA
ACGTGATTCATCAGCTAAGATTTCTGGTCATTCGATTGAAGACTCCATCT
GTTATGTTTTGCCAAGGTACGAAATGACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAGGGTAAACCTC
ATAAAAAGATACTTATATGTCTAGAAAGCAAAATTATTCAGCCTAACCAT
ACTAAAGTTTCAGTTGTCAACCTCGAACTTAGCACATTTTATGGGGCAAA
ATGTAAACCTCgacaaaaatgtcacaaataccCCCTCTATTTTTGACCAG
CATCAAAATTTAATTAGTGACAGTTTTCTTCTTcccaaatgtttttaaaa
tcataATCAATTACTTTTCAAGTAAGGTTTGGAGAAGTCCactttatctt
ctttttttttcaaggcTAAGACTttcattaaaatcaaatttgatcaaatt
aaTTCTGatataatttacattcattctAACAGGTGGAAGATTTCACGATT
GATTTTAAATCTCTATGGAATTTCAAACGTGATTCATCAGCTAAGATTTC
TGGTCATGCGATTGAAGACTCCATCTGTTATGTTTTGCCAAGGTACGAAA
TGACCTTTTCATTGTTCAATGCCTTCCAATTGCAGGCAGAATTCCGTCTT
GACCAAGTTCATAAAGTGGTAATTTTATCTCAACTTCCAAAACACTTCAA
GAGACTGGATGAATTTTTTCCTGTCTGATATAGAAATGTTGCAACAAAAT
CTTTCAAGGGACTAAGAATGTTTATGAATTATCTATCATaagattattta
tttatttcatctTTTAGTTTTCGTAAATGTCACATAACATCGATAACACA
TTCTATTCCAAAAAATACGCCTTTCAAAGACTATAATGCTTTAAAACAGC
ATTGGAAACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045246XLOC_045246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072932-exon-scaffold_86-1491911889:974577..974753TCONS_00072932-exon-scaffold_86-1491911889:974577..974753Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:974577..974753TCONS_00072932-exon-scaffold_86-1510915933:974577..974753Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:974577..974753TCONS_00072932-exon-scaffold_86-1575043694:974577..974753Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:975059..975137TCONS_00072932-exon-scaffold_86-1491911889:975059..975137Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:975059..975137TCONS_00072932-exon-scaffold_86-1510915933:975059..975137Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:975059..975137TCONS_00072932-exon-scaffold_86-1575043694:975059..975137Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:975705..975761TCONS_00072932-exon-scaffold_86-1491911889:975705..975761Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:975705..975761TCONS_00072932-exon-scaffold_86-1510915933:975705..975761Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:975705..975761TCONS_00072932-exon-scaffold_86-1575043694:975705..975761Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:976033..976144TCONS_00072932-exon-scaffold_86-1491911889:976033..976144Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:976033..976144TCONS_00072932-exon-scaffold_86-1510915933:976033..976144Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:976033..976144TCONS_00072932-exon-scaffold_86-1575043694:976033..976144Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:976272..976313TCONS_00072932-exon-scaffold_86-1491911889:976272..976313Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:976272..976313TCONS_00072932-exon-scaffold_86-1510915933:976272..976313Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:976272..976313TCONS_00072932-exon-scaffold_86-1575043694:976272..976313Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:976698..976771TCONS_00072932-exon-scaffold_86-1491911889:976698..976771Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:976698..976771TCONS_00072932-exon-scaffold_86-1510915933:976698..976771Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:976698..976771TCONS_00072932-exon-scaffold_86-1575043694:976698..976771Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:978659..978768TCONS_00072932-exon-scaffold_86-1491911889:978659..978768Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:978659..978768TCONS_00072932-exon-scaffold_86-1510915933:978659..978768Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:978659..978768TCONS_00072932-exon-scaffold_86-1575043694:978659..978768Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1491911889:978994..979088TCONS_00072932-exon-scaffold_86-1491911889:978994..979088Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1510915933:978994..979088TCONS_00072932-exon-scaffold_86-1510915933:978994..979088Clytia hemisphaericaexon
TCONS_00072932-exon-scaffold_86-1575043694:978994..979088TCONS_00072932-exon-scaffold_86-1575043694:978994..979088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:974577..979088 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231233	0.225489	0.18701	0.219552	0.311831	0.211211	0	0	0	0.1724	0.100401	0.176	0.0439388	0.136893	0	0.241555	0.446363	0	0.0702302	0.0734909	0.159692	0.327148	0.0757506	0.172171	0	0	0	0	0.0366644	0.149421
Blast
[Close]
BLAST of TCONS_00072932 vs. Swiss-Prot (Human)
Match: CR063 (Uncharacterized protein C18orf63 OS=Homo sapiens GN=C18orf63 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.506e-35
Identity = 75/228 (32.89%), Postives = 122/228 (53.51%), Query Frame = 2 
Query:   68 EKRLFFTALPDLSMLTAFRAAFTSK---QEIIGIQPPCCRELIFTLPEILVSPAFDNKSNLFIIAEKKLSSSADFSKTLERLQIKLCTRLEVDAELFEYCLTYTLYQKLAPFWNKTNSFLVRGRNFLQVKDKLSATGLELYVTD-KICIAMEPFQIRSPPIEVEDFTIDFKSLWNFKRDSSAKISGHAIEDSICYVLPSFRKCHITSITHSIPKNTPFKDYNALKQHW 739
            ++ LFF  LPDL+ L A R   ++K    EI  IQ   CR+L+F   +IL SP     + ++++       +   +  +E+   K+     V   + + CL+Y+   +LAP WN+T   L++GR+FL    K SA  L + VT+ ++C+++E   IR P  E+++F I    + +F  +  A I  H+I  + CYVLPS +   I +I H+IP   PF  Y   ++HW
Sbjct:    6 QQSLFFITLPDLNKLCAVRIILSNKVADTEIRTIQMKMCRQLLFLHQDILTSPVSGILNQIWVVMAIPFYKARKLNAYVEKYGAKMEAPQRVIPVILQNCLSYSFMARLAPAWNRTGHLLIQGRDFLSQMGKQSAVVLNINVTETQVCLSIEACTIRLPAPELKEFEISQSIIKDFHANKHAVIERHSILSNWCYVLPSMKMGQIINIFHAIPAACPFHSYGDFQRHW 233
The following BLAST results are available for this feature:
BLAST of TCONS_00072932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CR0632.506e-3532.89Uncharacterized protein C18orf63 OS=Homo sapiens G... [more]
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