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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072925 ID=TCONS_00072925|Name=TCONS_00072925|organism=Clytia hemisphaerica|type=transcript|length=770bp
aatcagaaaaatgttGGTTAGTTTGAGAAGATGGGTGTTGTTTAGTTGAA
ATAGATTGAATAAATTGTGTTAAGAAAGGAATAATTTGTCTGTAAAAACG
GCTTAAACTTGAACATGTATTGAACAATGGCAGTCTGAACGAACTTTATG
AAATTGAAGGATTTTCAAATAATGGAAAAAATCTACTATAACTCACTGAA
GTTTCAGAACCCATGCCAGAGTCAGCCACTGAATGAATACTTCCATCAGT
TTCATCATCACTGTAGTCTATAGAACGTGGTGTTAGAGGTAAGAGTAAAT
TTTCACAACGTGATCGACCAATTTCTTTTCGTATGGATAATGGACGTTGG
GATTTCCTCGTAATAACTGAATTGGATGTTGAAGTTGTGTTGGCAGTCAT
AACCAAGACAACATATTTCTCACCCTAAATAGTGAAAATATCAAGCTTGA
AGACTTAACAGagctttaaattatttttgtggACTCCTTTACTTTGGTGG
CTAAAAATAAAAGAACGTGCATTAAATCTGGATAAAATCTACAACAAGAA
ACAGCTAATGTCAAAATCAAGTTggtgtaaaatgtaaaaattattCCATA
TTTTTACTTACATTTTCTGTTTTGGTTGCAGTGACTAGTTGCAAAATGTC
CCTGAACTCTTGCCTTGCCCGCACTATAAAGTAAAATGCATTTGTTTTTT
AgatttattactttatttttttacaatgaaGTTATTTAAGAATACAAAAT
TCAGTACCAGACAATGAACT Run BLAST on NCBI transcript from alignment at scaffold_86:857488..859414+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072925 ID=TCONS_00072925|Name=TCONS_00072925|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at scaffold_86:857488..859414+ (Clytia hemisphaerica)
aatcagaaaaatgttGGTTAGTTTGAGAAGATGGGTGTTGTTTAGTTGAA
ATAGATTGAATAAATTGTGTTAAGAAAGGAATAATTTGTCTGTAAAAACG
GCTTAAACTTGAACATGTATTGAACAATGGCAGTCTGAACGAACTTTATG
AAATTGAAGGATTTTCAAATAATGGAAAAAATCTACTGTAAGTGATGAtt
ctttactttgtaaaaacatttttaattaattttgcaAAGAGTTTTTGACT
GCCCTTCTTACAACAGTTTTAACATTTGCCAAAGATTTTCCCTCATAACC
TTTGATTTGGGAATCTCCAAGACACGTTTCATGCCTCAACTCATTTCCtc
agatattttttattttttcactatttgaagtacaacaaaaaattgaatgc
ATTTTTAGTAGTCTTGACTAGTACTGTACTCTTATTAAGATAAAAATCAA
AGCAAACCTTCCAAGTCATCTTCTGTCCCATCCATCTGAAAGtataaaaa
gaaattataagttgaaaaaacatattttaataaaaatcaatGTTCATAGA
TCTGCACAAAGAAGGTCTATTTTCAAAGTTCTGACACAAACATAAGCTCT
GTGGCAATACCTGGATTTTGATGCTGGGTATGGCTTTTATTTTTGGGCTA
CCAGATTTTTACAATCAAGACAAGTTATAAGTATTTTGTGACAAATGTTT
TGCAgagaagtttcaaaaaaatcctATCAGGCTATTGCTATttacttttc
agattttcaaagaatggaataaaaactttttgagcAAATAAATCATAACA
TCAAAAATACATTTGAATAAAATGATTCAAATATTTGTATAGGACATTAA
CTGAACACCAGACATAGGCTAAGATGTatctaaaaatatctaaaaaagag
ATAATTGAGGAGTGAGAGGTGATTgggttttaaaatattttgtcaaacaT
ACCAGTGTGTCAATAGAATCCATACTTAGAGATCCCGGTAATCTTCTACT
CATTTCTTGACGTAATGAAGCAACTGATCGTATGGActaaaaaagtaata
attacGTTCACCAAAATATAATTCCCTTGGTTGAGCTTTTCAGAAGTAAA
TTTAAATTGTCCCAGAACCATGGACAATCCAGTGTTTCAAGAGATTTACT
TTTACTTATTTCTGAATTTGACCGAAATGTTTTCCTAGCTCAAAGCATTA
TGTAAATGTCAACAAATTCACCCCTCTTAATTTTAGTTGGACGGAGGAGC
TTCTGGGAATacttttttaagaaacaaataATAATTAAAACTATCAGTCC
TCAAAAATGTTGGTAATTTCAACTTTCGTAATTCTTGATTTCAGATAACT
CACTGAAGTTTCAGAACCCATGCCAGAGTCAGCCACTGAATGAATACTTC
CATCAGTTTCATCATCACTGTAGTCTATAGAACGTGGTGTTAGAGGTAAG
AGTAAATTTTCACAACGTGATCGACCAATTTCTTTTCGTATGGATAATGG
ACGTTGGGATTTCCTCGTAATAACTGAATTGGATGTTGAAGTTGTGTTGG
CAGTCATAACCAAGACAACATATTTCTCACCCTAAATAGTGAAAATATCA
AGCTTGAAGACTTAACAGagctttaaattatttttgtggACTCCTTTACT
TTGGTGGCTAAAAATAAAAGAACGTGCATTAAATCTGGATAAAATCTACA
ACAAGAAACAGCTAATGTCAAAATCAAGTTggtgtaaaatgtaaaaatta
ttCCATATTTTTACTTACATTTTCTGTTTTGGTTGCAGTGACTAGTTGCA
AAATGTCCCTGAACTCTTGCCTTGCCCGCACTATAAAGTAAAATGCATTT
GTTTTTTAgatttattactttatttttttacaatgaaGTTATTTAAGAAT
ACAAAATTCAGTACCAGACAATGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072925-exon-scaffold_86-1491911889:857488..857674 | TCONS_00072925-exon-scaffold_86-1491911889:857488..857674 | Clytia hemisphaerica | exon |
| TCONS_00072925-exon-scaffold_86-1510915933:857488..857674 | TCONS_00072925-exon-scaffold_86-1510915933:857488..857674 | Clytia hemisphaerica | exon |
| TCONS_00072925-exon-scaffold_86-1575043694:857488..857674 | TCONS_00072925-exon-scaffold_86-1575043694:857488..857674 | Clytia hemisphaerica | exon |
| TCONS_00072925-exon-scaffold_86-1491911889:858832..859414 | TCONS_00072925-exon-scaffold_86-1491911889:858832..859414 | Clytia hemisphaerica | exon |
| TCONS_00072925-exon-scaffold_86-1510915933:858832..859414 | TCONS_00072925-exon-scaffold_86-1510915933:858832..859414 | Clytia hemisphaerica | exon |
| TCONS_00072925-exon-scaffold_86-1575043694:858832..859414 | TCONS_00072925-exon-scaffold_86-1575043694:858832..859414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:857488..859414 + |
Blast
The following BLAST results are available for this feature:
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