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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072898 ID=TCONS_00072898|Name=TCONS_00072898|organism=Clytia hemisphaerica|type=transcript|length=4361bpRun BLAST on NCBI transcript from alignment at scaffold_86:552766..577501+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072898 ID=TCONS_00072898|Name=TCONS_00072898|organism=Clytia hemisphaerica|type=transcript|length=24736bp|location=Sequence derived from alignment at scaffold_86:552766..577501+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072898 vs. Swiss-Prot (Human)
Match: PDPR (Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2) HSP 1 Score: 382.104 bits (980), Expect = 1.667e-113 Identity = 228/707 (32.25%), Postives = 369/707 (52.19%), Query Frame = 3
Query: 321 YHLAELGWKDIVILEQGSPGCGTSWHAAGLVGSLKSTKVELQNVLYAQKLFEKFEQDHGV--GFKKCGSLSLAQTDERAKALKRMETMINSFGGECHLISPEEAGKLNPYINIDDIKLAFFVPNDGVVNPTDVVNAYLKGAMNNGSTKLLEGVQVQKIKCDGRRVTNIETDHGNIKCDYFINSAGLWARELGQKSDIQVQVPLHACEHFYIVTKPCN--VDTMMPVTRDYDSFAYMREWSGGLMAGGFEPNPLPCFHDKIPEKFEFQLLDENWDQFMPLMEGISNRFPLMKTAEIRTFLNGPESFTPDYRPYFSRSMELENYYIAAGMTSYGIAFSAGVGRTLAELITHGEASNFDFYTSDIRRIAPGTNNKRICRTGARDTLENAYLLQYPDKCHLSSRNILTSSIHNLLTKQGAVWTKENAWEIPTFFKEANQD----EFPGSFGRPLWLQNVQNEIKTAKTTMGIVDLSSQSVFQLTDIGNNSMAHLM------------NVILPGKFTGEWKNGQTSISTPIVNQNGRCVAMVTXXXXXXXXXXXXTDAFNHNTLYTFLQGLLNSDKQSNQIILQDMTSAYSCFGLVGPNTMELLKDLIPPPDNEDIETLKGCKLIDIGYASNV-IIYPGQLGE-GFNLLIPTNQCQGLYQEIMDENEKYGIRNIGHYAWNSLRVQKRI---------LKVPNEIGMNTSVDL 2348
YHL+++GWKDIV+LEQG G++ AG++ + + +E + Y+ KL+ + EQ+ G+ G+ + GS+ LAQT +R +LKR+ +N G +ISP++ +L+ +N+ D+ A VP D VV+ DV A A NG ++ + V + +VT +ETD G I+C YF+N AG WA ELG ++ V +PLHACEHFY++T+P + + P D D Y+R W GG+++GGFE NP P F + + E Q L E+WD F PL+ + R P ++T EI +N PE+FTPD R S ++ Y++ AGM S G++F G G+ LAE + HG S + + D++R +++ R + + Y L+ P + R + TS +++ L QGA W +++ +E P +F ++D E +F +P W V++E+K K + ++D+SS + F++T G+ ++ L +++ G + G I N R M++ TD H + +L+ + D + ++L+D+T Y+ L+GP +++L +L P D CK + +GYA+ + ++ GE GF L IP +Y E+M +KYGIRN G+YA SLR++K L P E G + V L
Sbjct: 59 YHLSKMGWKDIVLLEQGRLAAGSTRFCAGILSTARHLTIEQKMADYSNKLYYQLEQETGIQTGYTRTGSIFLAQTQDRLISLKRINAGLNVIGIPSEIISPKKVAELHHLLNVHDLVGAMHVPEDAVVSSADVALALASAASQNG-VQIYDRTSVLHVMVKKGQVTGVETDKGQIECQYFVNCAGQWAYELGLSNEEPVSIPLHACEHFYLLTRPLETPLQSSTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTEG-KNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLEIMKLVNCPETFTPDMRCIMGESPAVQGYFVLAGMNSAGLSFGGGAGKYLAEWMVHGYPSE-NVWELDLKRFGALQSSRTFLRHRVMEVMPLMYDLKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQYLFSNDLDVPVGHIVHTGMLN---EGGGYENDCSIARLNKRSFFMIS-----------PTDQQVH--CWAWLKKHMPKD---SNLLLEDVTWKYTALNLIGPRAVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDINNLTTPLECGRESRVKL 743 The following BLAST results are available for this feature:
BLAST of TCONS_00072898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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