TCONS_00072888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072888
Unique NameTCONS_00072888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072888 ID=TCONS_00072888|Name=TCONS_00072888|organism=Clytia hemisphaerica|type=transcript|length=1552bp
aaaaaagactttgaaatcaAGAAAACTAAAgTTCAGCCTTCACTCAACCC
ACTTATTTCGAGCTCTGCAATTACGACAAATGGCATccttatcaaaaaat
atttctgtcACACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGA
TTTTGTCgtacaaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTT
GTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAA
AATGGAACTgcaagaaaattggaaaaaatggataATTGcTATGCTGTCCG
TACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGTTGATCTGTA
CTGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGAGTTAGATGT
TCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAAGCTCCAAGG
ATTATTCCAAGGATGCATGAAGGGAAGAACCATGTatgttattccatttt
caatgGGACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACT
GATTCTCCATATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATC
AAAAGTATTGAATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACT
CTGTTGGACAACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCA
TGTAATCCAGAAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAAT
CATCTCCTTTGGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaat
gttttgcTTTGAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTA
GCTGAACACATGCTGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAA
ATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTA
TGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGAT
ATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCC
AGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACC
CACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCT
ACTACTGATGATGGTGAAATCTACTGGGAAGGTCTTGAAAAGGAAGTCAA
CCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAG
AATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCT
GGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCC
AATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGA
TCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTT
TGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAG
AGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_86:541480..550419+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072888 ID=TCONS_00072888|Name=TCONS_00072888|organism=Clytia hemisphaerica|type=transcript|length=8940bp|location=Sequence derived from alignment at scaffold_86:541480..550419+ (Clytia hemisphaerica)
aaaaaagactttgaaatcaAGAAAACTAAAGTAAGTCCATCATCTACTTT
ACGATTTGAGTACtaattaaagggataatcagatggtttgagatatttgg
catgtgggatCCTTCTATTGCCCTGAGCAAAACCTCAATATTTTCAAGTC
CAGATATTTAAATTACAAGCTTTTGACTTTTagtaagaaaacaatagaat
ttcaacgtaagaaccgtgtgagaacccattttcagaaattttaaattttg
atatctcgACTTTAGAATATAGTTAGACAAAAATACTTggtgattttatt
caaaatcaCATAGGGTTTTAAAggcaaaaaatctcaaaccatctgattat
ccctttaaaatttttattctaatGGGTAAGTTGTTTAATATGTGTGCAAC
TGTACTTTCAGGACAGTTTGTTCTTTACCTTGTTAAATGTGAGTCAATTA
GAAATTAGAAAGTTGTGATAAAATACCTAGTATTAAAAAGACTTTGGTCC
TTATttgcaaaaactattttttaagtaaaaagtaaaacttgacaagcttt
taatttttaatcatttaGATTTAATAAGATCAGTACATCCGAAAGAAGCT
AGTCTTTGAAACTAGTTTAACTTACTTTCTAAAAACTGTCATAAGATGAA
ATTAcacaatttttagaaaatatttatacAACACATGATATTTATAATCT
TCCATTATTTGAGAGggattttaaatttcgaaactttGACCTGTCAGACA
TGTAAGCATTGCTCAAGAGAGgaatttaaagtcctttgataCACGTGGTT
TAGAGATTTTATcctaaaatttgaaagaaaaacatatcTGAAAGATAaag
gttttgagaaaaattatagcattccATCGTGACGTCATGACTTTTATAAA
AGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATAACAGTCAACCGTT
TTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAAGGTAAGATTTGAT
GTAATTATTTTGCTAGATGGTACGTATAAGTAATAGTGAGATATCAAAGT
TTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTCGTAAGTTATCTAGAG
CTAAAAACAAGTCTTCTtgggaaaaattaaatactaTTGGATAAAAAATA
CAACGcaaaaatttttccattttatcATGCTTCAGTGGGCAAAACCTAAA
AtaataagaaatacttcttcttTTTATGGAACCCCAAAAATTCCAGGAAA
ATTGCACGAATTCCAAAATCAGTATTCAAAGCAAAGGTTTCATTGTCACA
TAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCTACCAGCATCTAGCAC
AGTAATCCATCTTAAACTGAAAATCTTGTGTGTACTGCGCTTTAGCTTGT
TCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGATAACtagatatttca
aattttcaaatatgcTTAGGGAAGAGGAAAATTTGAGGAAATTCAAAGGT
ACACAATTTTTCCTggaaaagttaaaaaacataCAGAAAATTCTTCTAGA
AAAATAGCAGGATAGCCGTATTTATCATTATCATTCCCTGATTCAACTTA
ATCCCTTCAGAAAACTGTCAACAAAAATATTGTATGCATGGGTTCTCTGA
AAAGATTTCTTTATAACTTCAGCCATAAAAAATCTACAGGTTGGCATGAT
CCCATGAAATTTATTCTTGTCtctctatttttctttgccTTGCTTTTGCT
TTGCCTTTGCCTGCTTATTATTAATTGCATTTTTTAATAATTCTAGATCA
ATTAgataatttaaaaaagtataACTTTCTGCCTCCTGACAAATTGCAGG
GTACAAATTCCTGTAAATTCCAATTTTCACACATTGAGCAAGACTCAGAC
ACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGGAAAATGAGGGACACA
AAAAGGTActtttgattatattttgattCTGAAGTCTTTCCTATAACTGG
ATCATGTTAAAACTATGATAAACCATTGAtgcttttcagaatttttcatg
taaattgaaaattttactttgaaaaattcaggcaaactttcaactaaaac
CAAAAGTGTCATTTAGAAATTGAATCATATTCAGAATGGGCAAATTGGGC
ATGAAAAATCCAGgcaaactttcaactaaaacCAAAAGTGTCATTTAGAA
ATTGAATCATATTCAGAATGGGCTTTTGTAGTGGCTTGAAGTGGCTttag
ttttcaaaatatatattgTTGAGTATGTGACTTTACTATATGATTAATGA
GATTGGATATTTTTGCTGGAGGTTAacttgtttttttaaatcaaaaaatt
tccatggaaaatcttatttttagtttgcttttacttacttttgatacttt
tgatggGTTTTTAGAGTCTCTCAATCATTCCATTTGGATTTTAGATGCCC
AAAAAtacatttcattattttccctTTAGATTTAGGACATAATGTCACTG
GAGATATTATGCAAAAAGAACTGATTCAAAAGCTTATTTACCATGAAATC
AAAATCTTGTCCAAATCAAGAATATATTTTACAGACAATCGCTAGACATT
TGTGACACTTTGTAAACTTGTTTGAATGTGCACTTTTAAACTCGGTGTGC
AGACGCTTAGTTATAAGTTATATGAAACACATTAAGATATTGATCTACTA
GGCTATCTACTATGGAATTTGGAgtaccaaattttcaaaaagattttgat
aaTTCAATCACTTTTTTAACAACCCTTCGAAGACTCAATAACCGTAcata
ctttgattgttattaaTTAATTTCGATAAACTCAACACAACCAATTGATT
ACTTCTATAACTATTGATtacttaaagtctgtctcaatataatttgacaa
aaaaggctataacttttgatagaattcaaatTAGATAgcagttttgtgct
tgttgagaagacaaacaggagtggaacattatcataaagaaaaaattcaa
aaaagattgaaaaacaaagatggaaatgaagaagaagaaaatcaacttct
tcaataattgtgcttataattatcattttcacacgagtgattcTTTGACC
TTAGAGCATCATTAATGTGAAaaacaatcttcaaaaaaatttattttatc
caaagatatagtccaaagtttgtcactgattgacttcaaaaaccatcaaa
aacaaacaaaaaagagcccttttttaagtcaaccagcgacaaagttttaa
gctgtattttttgactgaagcaatattttgtgattttatttCGTATATCT
ATGATGTtctaaagattaaagaatttttaatatgaaaatgaaaatcatag
cattattcaacaagaagttgattttctactatcttatttttcatctttgt
ttttcaatttttttaatttttttcttttttgacagtttACAGTAGTGGAA
GTACCTCGATTTTAAGCATGTTCAaaaagttcacaataacgactttcttt
ttataacggAAACCAAACGAGTAAGAAAAAGTCAAGCAACTAAATCTCAG
CGCTCCGTGGTTGTGACGtagtttacaaaattgttaagatataatgacat
actttttaacaacttttttctatgtcatttttgaagcctcttcGTAGGAG
AATTTTATtacacttcatggcagattaaaaagacgattagaaaacgaaag
cttcttcatttttcatttttgcatttaaggggaagaatgaaattttcaga
agattatttatttgatatgaggattcccatttccgtaaaATTGCAATTCC
TCATGGTTGTGAAATGgtggctatgggtaattcctttgttcttttgccaT
TTTCATTTGTTCTATGTGACGTAAAGATGCTTCACAAATCAAAGTATTTC
CACTAACTGTTTGATAATATTCAACTCtgaaatatctttttaatgagCAC
AAAACCAATATCTATCAGAAGTTATAGCCTTGGTTGTCTCTATTGCAAAT
TATGTTGAGACAAACTTTagataaccaattgattacATATATAGTATAGA
TgtctttaagaaaaaccaaaaacattgacctTAAAACCAAAGCACAATAA
GAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAATTACCCCACCATTTT
GTGTGGGTTTCCCGAAGTAACTCATATCGTGCATTCTGATTGATCGGAGA
AAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAAAGAAGAATATGTTGA
AATTAGAAagagatgtcgacattagaccaacttacagtaattaattagtt
attcaaaagacgaAAGACCGTCATGTTCCTTTATTTATATGCTAATGACA
AATGAACAGCATGGCAGTGCTTGGAACCAAAACTGTTGATAAGAATCTGC
CAAAccaaacaatcaaaacaaaacacccCCACCACCCACAGTCcactttg
aaaacaaaatttaaaaattgaatagaaaaccTTTTTCATCTTTGTGCCAG
TAAGtccagtgaaaaaaaattttgtttctaaaaatgAACTCACAGCTCTC
TAAAAATATTATctgttaaaagtaaaaaaaggaCGGTGTGTAGTTATAGT
TGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAATTCTCACTGAACTAA
ATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCATTCATTACACATCCC
TTACACTATATAAAGAggtttttaaaatctgaaacattaaaaattttgtt
aagattttgactttttttgatgtTGATGTCGCTATCAAAGATGGCGGGTT
TCCCGCCagaaattgtaaacaaaaactaGCCTGTGAAACCTATTCCGGTC
CTTGAAATATCACAGGAATAGAATTTTGGTTCggtaaaataaatcaaaag
aatttgataatGAGATTTCCTGATTTCATGAATGTGCAAAGTTGCCCAGG
GAATTTGATAAGCACGTTGCACTCAGTGGCTGGAGAAGGCGACACAAAAA
TCactttaaactaaaattgctcGAGGTTTTAAAGTACAACAAAAATGGCA
CCATATGCTAAGCTACTCACAAGGTATACAATTTTTGTTTACACCAAATT
TCTcggaatttttttgcaaaatgaagtcattgcaaagcaatttaaaaaaa
taaattttactcGACTGTTCGATTCGATGAATTTGAGGCTTTTGTAGTTT
TTATTCCTTGACTCTCATGGACATAGATCAGCATGATTTGTTTATAGAAC
AAGGTATATTGTTTTGTTTGCAGTATAGTtgttaaaaaagttttgtttgt
tttggctTATGACATTGTTTTTATTACAAACTTTCGaccttttgttctta
tttattttGTGTTGATGGGACTTTTTATAGCAgtatttgactgaaatttg
aaaCCTTTTATAAAGCACTCAATGCCTTTTTACTTCCGCGTCTATAACAA
GTTTTTAGATAGATTTATCTATTTTTGTGAGTTTTGGACGCATTCAACCG
AAAATATAgaaacatttttagatttcttacTCCTAAACTAAATTATTCAT
GATCAATACAAGAGTTTCCAATCCCTATACAAATGACCTCTTTTCAATCT
CTAAGCTATGATTCCTATAATATTTCTTGACTTCATTCATCCCGTTTAAG
GATTTGAATATGTCTTTTAAatacaaaatttagaaatgtaAAAATGGCTT
TACAATTAATGATAGGAACTTATCAGTTAGATTTAAATAGTTTTTAAAGA
TTAATGTCTTgcattaagaagattaaaagaCATTTAAGAGTTTCTATTGC
TCAAAACAGTTAGACTCACACCTTAATTTAAACCCTATTGTCAAGACACA
AAAATTGAAATGCTAGAATTCTAAGTACCTTATAACCAACCTATatgtaa
aatagaaaatgaaccACTGAACTGACTTggatattttttaattcaagggT
TTATTTTATAGATAAACTTGGCACTACATTAGACATTCCCATACTTTCCC
ATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtgaaaatgttatatttt
tgtttcaggTTCAGCCTTCACTCAACCCACTTATTTCGAGCTCTGCAATT
ACGACAAATGGCATccttatcaaaaaatatttctgtcACACATGGCAATT
TTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgtacaaaaaagtgaa
ttatgtCAGCCAGATTTTCTCCACATTTGTGATGGCTCAGAAGATGAGGC
ACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACTgcaagaaaattgg
aaaaaatggataATTGGTAAGAATGCACTTATGATTACTATTAACAAAGA
ATACCTCCACTCACTTTTAACTaaaaaccattttgatttttttaatcaaa
attgtcatGATAAAGATTgaatattctttatttttagcTATGCTGTCCGT
ACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGTTGATCTGTAC
TGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGAGTTAGATGTT
CAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAAGCTCCAAGGA
TTATTCCAAGGATGCATGAAGGGTAAAGATTTGAGATTTGAAATTATACT
TAATACATTGCTCTGATTTGTGAGTGTTTTTTACATGGTTTTCACATGGT
TATGTTTCatctgattttttgtttttattcatgATCTCTTTTGTATCTTA
TAGGAAGAACCATGTatgttattccattttcaatgGGACCTGTTGGCTCT
CCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTCCATATGTCTCAAT
GTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTATTGAATTCTCTGG
GTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGGACAACCTTTACCT
CTTGAAAAACCAGACCCATATAACTGGCCATGTAATCCAGAAAAGACTGT
TATCACACATTTCCCAGCTGACAGAGAAATCATCTCCTTTGGATCTGGTT
ATGGTGGAAACTCACTTCttggaaagaaatgttttgcTTTGAGAATCGCA
TCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAACACATGCTGGTATG
TTCTCATTCCCCTTGAATTCGCAAAGTTAATTTATTCATGCTATCAAGTG
CTATCTATGAAATCTGAAAAGTAACTAATTGGTTTTCATTGTCACCTCTT
TTAGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAAATATGTTGCTG
CTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTATGTTAACCCCA
ACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGATATTGCATGGAT
GAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCCAGAATATGGAT
TCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACCCACAAGCATTA
ATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCTACTACTGATGA
TGGTGAAATCTACTGGGAAGGTACAAcaagatcaaatttaatttctcaGA
CTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatcatcaatttttaaaa
atgactGAAGTTCTTAAGCTACACTCTATTAATTTCGCTATCAATGCGCT
AATCTGTATTCATGATTCATGAATATTAATTCGattaatttgatgaattt
tttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACT
GACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCA
TCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATC
CACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCTATTTTGTTTGGT
GGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCA
ACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTG
CAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCA
TTCTTTGGATATAACGCTGGACATTACTTTAAACACTGGCTGAGTCTTGA
AGATGATAAGAAACATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCA
GGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGTAAGTCCTTGTTTACA
TTCTCATGGCTCTCTTTCATTTCATATAGACTTTACAAATTAANACCAAC
CCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGC
TACTACTGATGATGGTGAAATCTACTGGGAAGGTACGAcaagatcaaatt
taatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatcat
caatttttaaaaatgactGAAGTTCTTAAGCTACTCTATTCATTTCGCTA
TCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGattaatt
tgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCG
TTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAACAA
AAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCAAA
GTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCTAT
CTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGCAT
TTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACG
ACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTCGC
CATGAGACCATTCTTTGGATATAACGCTGGACATTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072888-exon-scaffold_86-1491911889:541480..541509TCONS_00072888-exon-scaffold_86-1491911889:541480..541509Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:541480..541509TCONS_00072888-exon-scaffold_86-1510915933:541480..541509Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:541480..541509TCONS_00072888-exon-scaffold_86-1575043694:541480..541509Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:547538..547795TCONS_00072888-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:547538..547795TCONS_00072888-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:547538..547795TCONS_00072888-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:547917..548101TCONS_00072888-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:547917..548101TCONS_00072888-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:547917..548101TCONS_00072888-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:548233..548624TCONS_00072888-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:548233..548624TCONS_00072888-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:548233..548624TCONS_00072888-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:548734..549049TCONS_00072888-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:548734..549049TCONS_00072888-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:548734..549049TCONS_00072888-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:549239..549265TCONS_00072888-exon-scaffold_86-1491911889:549239..549265Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:549239..549265TCONS_00072888-exon-scaffold_86-1510915933:549239..549265Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:549239..549265TCONS_00072888-exon-scaffold_86-1575043694:549239..549265Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1491911889:550076..550419TCONS_00072888-exon-scaffold_86-1491911889:550076..550419Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1510915933:550076..550419TCONS_00072888-exon-scaffold_86-1510915933:550076..550419Clytia hemisphaericaexon
TCONS_00072888-exon-scaffold_86-1575043694:550076..550419TCONS_00072888-exon-scaffold_86-1575043694:550076..550419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:541480..550419 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.73	59.4751	14.4679	8.72639	215.967	176.492	308.583	379.357	490.01	693.121	1260.44	723.366	280.573	459.284	358.567	253.424	192.53	143.238	286.871	264.892	702.201	716.495	405.253	567.319	461.125	473.525	893.457	1271.87	183.445	217.32
Blast
[Close]
BLAST of TCONS_00072888 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0
Identity = 319/495 (64.44%), Postives = 384/495 (77.58%), Query Frame = 2 
Query:   68 QLRQMASLSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYF 1552
            QL+   +LS    V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y 
Sbjct:    4 QLQNGLNLSAK--VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYL 494
The following BLAST results are available for this feature:
BLAST of TCONS_00072888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+064.44Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
back to top