TCONS_00072882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072882
Unique NameTCONS_00072882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072882 ID=TCONS_00072882|Name=TCONS_00072882|organism=Clytia hemisphaerica|type=transcript|length=180bp
TACCTTTCATAATTTTGGTGATGGGATACTTTTCATTAATAATTTTTGTG
ATTTCATTTTTCACAGAACCTTCATCTCGGCAAGTCGTTTCAAGTTTTCG
TCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTCCTCGACTTT
TTTATCATGTATCTTCAGTACACCTTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_86:491322..500310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072882 ID=TCONS_00072882|Name=TCONS_00072882|organism=Clytia hemisphaerica|type=transcript|length=8989bp|location=Sequence derived from alignment at scaffold_86:491322..500310+ (Clytia hemisphaerica)
TACCTTTCATAATTTTGGTGATGGGATACTTTTCATTAATAATTTTTGTG ATTTCATTTTTCACAGAACGCTTCATCTCGGCAAGTCGTTTCAAGTTCTC GTCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTCCTCGACTT TTTTATCGTGTATCTTCAGTCGGCCTTAAAGCATGATATATTAGAAAGGT TTTAAGTTAGATTTTTATGATTTACATTTGCGTTTAAAGCTTACATAATT TTATATAAGGCCAGACCGATTTAATTTgctgttctacgggcccgaccgac cctatttttgctaaaatcaaaaaaataataatgagtTTCCACTActagga gttgccataaagccattatggtaataacagggagggcacattgctttACA TTGTATATTGGCTCACTGCTTTTgtagtttgagcactcttggattgggtg gagagtcttcatttaagacgctcactatttgcattatgcattgctcgctg ctcgcagtttgagcactcttgtgactccacaatgcaatccacaaaaagta accgtacatcctgtgcccaagttcaggagttgccataaagccattatggt aataactgggagggcacattgctatacatcgagtttccactacaatatat ttcacacactagttatttgtaagaattaaatttgataaagctgaaaatga attcaagaaattgaaaaattgagaaaatcaagcattccatacactaaaat tttattatgatcttcatcgaagataaaaatNcccgaccgaccctattttt gctaaaatcaaaaaaaataataatattgaatttccaatagAATATATTTT ATGCACTAGTTATTTATAAggattaaatttgaataaagctgaaaattaat tcaagaaattgaaaattttagaagatAAGCATTCCATAGActcaaatttt attatgatcttcatcaaagataaaaaaaaatttttgatcaagatattttt tggaaaatattttcggtaccttaccaaccctgataaatgaaaaatttatt cttattttaccgaccgaccgacccatatttttctagcgatctgcccgtag aacaacaaattaaattggtctcgcctaacttATAAaaattgattagtttg attcgCAAACTTTGTCTTattgaatttctaaatttggtgAATATTTTGAC GAATAATTATAATACGTTTAAATTTCGCAAGAAGCAATTTTGAAGCATTA CGTTCACACCAAATTCCCCagcagaaaaaataattttctaacgAGGATGA AATATCggaaatgataaaaattttaccttctttttcttcaacttttccaT GTTCTGCATTGACAAACGAAACCATCAAGAAGACGGCAAATGCAAATTTT AAATCCATGATATGATTTGGTACCAAAGATGCTAAAAAAGTAGCATTCAG ATTTTATAATCAGATAGTTACTTCGCCGAATACAAAAAGATCCACCCTTT TATTATTGCAATTTAATTGCCGCAAATTAAAGCGATATTTGATATAAAAA TCCCTCAAGAACTGACATTCATAAGATCAAAACATTAACCCTAAATTCGG TAGAGCTTCATTCAAGACAAATTATAGTACATTCATAAAAAAGATCcact cttttatttttattactgCAAATGAATCGCCACATATTAACCGTGCAATC AAAAGTAATCGAttgccaaaaattaagaattaacTAGTTAGGTCACTGAT GGAGGTAACATCACTCACTCCAATgttgatttgaaatttgaaattttaat tgttACGAGATAATTTGATGCCTCTTCCGGCCTCCTCAAAATTAACTTCT AACGCACTTTAAGCTTAATTTCTGTGGAGAACTACTGAAAACCTTGATCG ACTCCCCCCCCCCATAAGTCAAAGATAAAATATCAGATTTAGATTCCCTG gtttaattcaaattttgtcAAGGTTTGAAGAAATTATGTTACAGTACATT ATGTACGAGATTTTTGGTGTCcaaattaagggctctgactatAGTGAATC TTTtatatttgccacttacaaaattCAAAGTTCTACTTaatgtagcccac aaaactgtggcatgttatacattttctgttaggccaattatccttgaTAT ATATcgcaatgaaataatttgatgaagaagaaaatgaagacttttgcgaa gaagagtatttcaactttgaagagcttagtttcggcggagaaaaaacatt ttgaaagaatttttgcggtagatggtgaatcttttatcaaactaaaattt ttttaaacaacttttgatgcattaatttagaaaatttttccgaaaaattt gaaacagTTTAATTCTTTGCGgatagtttgaaaaaacttcgaaacaaaaa gtttaaaactttttataaaagaaggtggtacaacatattattaacatatt tttaaagttcataacgtcatttttgtaattaaattcttaattagtcttaa gggatttgattaaaaagcaatttataaaggcaattctttgttaaaagtgt taaagaacctaaaacataacttttatgttcaaaaatactaaaatcgATTT TCCGACCTTGGTCAGACCCCTTAAAAAACATATAATTGAAGTCTagtcac gataagtgtgcactagtaaattttgctttgcttgttatttctcaaccaat gcttcaatcttaaaaagtttggtatcgttggGAAGGTGGGAAGGAGCTTA TTAATTTACTGTTAGTTTTTTCCGTGAAATTTGAAAGGaacatgaagaaa aatgaagaagaaaatttaactttttataGATAGGTCGTATATAAACGTTA TTTTTACATCTTTGAAAAGCTTATTAAAGCTTGGAgatttcaaaattata tttttactgtagcaaaatttagtgcacacttatcgtgaataacTTTAAAC CtttatctttttgaaattttgatcgtTCTTTGAACAAAATTTTACCAAAG AAAGAGTCGAAATTCTGTCCCAATGAAGACGCCAAAAACACCTCATCTAA TTTAGTATTAGGTAATCATTTCAACCATTTCAATTTTAGATCCTATACTT ATTAggacgaattttttttttctttaaaactttaaagaaaataacaaaaa tgaaagattCAGAATAATGTTAGAGATGAATAGGTAATATAGCCTTACAG AGTTGTCGAAGTAAAGTTGTACGATGGAAGGAGGTTGCCTCTGCCCCCAA AATTTACGATGGCAAGAACAAATGtttcaagaaaaacacttttcacCTCT CTGATGTTGTCTTGTTGTGTGTGatcgcaaaaaaataaaatttaaggagC TCCCGAATTCCTGAGAGACTTTAAAATGATAAAGTTACACACTATATTCC CTCAAGAGTGTAAACAcccatttttttatttattgaattttcaaattcca GAAGACAAAAATTCCCAGGAGACGATGGTTTGACACAGGcggtaattttt caaatttctgtcCAGAAAACAGGTAGAAAATCACTTCACAAAATTAAGTG AAGCTTATAATATATCTTTCTTTTGTAGGATGAATCATCATTAATTGTAA AGCCCCGAAGGAgctagagatgaatcttcaaTCCTTCTCAAGAGGAAAAA GTGAAGCATTACAATTTGCGCTGCATTTAGAATGACGGATTAAATTCAGC AATCTAGCCTTTTCTTTATTTCCAAGCAGCATTGATTTTCAAATCTGGCG ATGGATTTTACTAAACCACGTGGGTTGCACGTTTTGGATGGAAAATAATT AGGTTTCATTTTCCATTCAGGAGTTTCAGATCTATGCCCCTTCGTGGCTT TGAAATCAATTGGATTAACCTCAACCGGCTGGATTTACTTCCAAGAGCCC CTCCCAGTCGACCCTTAATTCGCGCACAtaattttgccaattcacgtctt cacgcgcgaaaaaaaaacaccttcacgttcacgcgccaattttgctttta catctttggttaaaacgattgtgaccttattgggctaaatatgACCTTTT TATGGTTTCTTTAAGCagtttgacctattcttatgccaaacattttcgcc aatatgAAGTATTCTGCAGTTTTGTGACCTTGTTCTCGATAGCGTCGACC TTTTAAGgcatcttttacagctatttgagctttaataaagcaatatttta ggtctgcagcgccaaagttacaaagaacTACCCCTCTGGCGAAGGGTGGG CTTTTGGTGTGGGATTTTCTTCCTCGCAGAACCGTAAGaagtctttttaa ttttaagtcGAGCTTGGGCCAATCATGGGttgagaagccgtagactttAA CACAAGCTTCAAAGAGGTGAAATGGTAGCAAAATCAGAGGAcgaaaattg caacttttgacCCCTATCTCATTTCGACAATTTCCGCCTTTTTATTATGa ctgaaaaacggccttaatacactattgttagccaagtataccttgtttgg tcacacaattcTTATGAAAATCTTTGTTTTATTCAACACTGATGATTCGT TGGCAAAAATCTGGTACGACGGGATTCAAAACTTGACCTACATTTAATGG GGCATATACTACAAGCCTTAAGCCTACTTTTATTTCAGTTTCATGGTATA TTCTACTTCTAAGAATTTTGGAGCTTTTCGCTTGCCGCCGAGAATAGATT CTGggaaattttgttgattttcattctacagggtgtccaataaaagtatc gagttcgaacatgattctgagtagaaggttgcGGCGTGtgaattagataa aaattgcatataactcactctagctccttggatattgaaaataagttatg aaaaaggggtataggaaactttctacacctaatgccgttcagaaaatgta aatatatctgtgactttagaggctgggtaaaagatatagcatcttcaAGG ACAACCAGTATTTTTGaaccctagaatcagcattgacaaaaccaaaaatt ctaaatgtgagaaaaagcaaaaaatcttggaattcNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAaaaac ttccaggaaataaagtagagatgttaaaggttttcatgcagcaaaaattt ttgtaaaatctcttttcctctagatttgagagaaatttcaaattggatCG CCGTTTTGGAGGCCACATACTGTATAGAAGTGGTACAGGCTTGaagacac gagaagtttttttcgcgttggtgcaatgcaatatGCTCCATcacaccaac ctgaaacgctttctcgtgtctccaccccattctTCTTTTTACCAATAAat gtgaaatctcacttttgtacCTGGGAAATAATCAGCGTATCTTTTacgta tttccctcactttttgtcccatgaaataaaataagaaaccatgggacaca ctttttcttgtgttggtggggtGGAGCATGTCGAGGAGCATGTTGTATTG CACCAACCCCCAAAGGTGCCGTGGTAagataaaaaattctattttagcTC ACGTTACAttgcaatagaatttcagcgcttgaccaatcagaactTTTGTT GATTCGGGATGTACAGTGTGATCTAGCCTCTACTTAGCAGACACCATTGA GAAAtctcataatatttgagaaaaaagggaaattcaccgggaagttttga aaccacaatcgatttgtaagtgctttaAAGCAGGTTCGAAGGATAGAGTT TTAATGCTAGACTTTAGAGAGATAGCCCAattcgactttctcgccggaac tttaaatcttgaaaaacgttaaaataattggaatttgcaatatatttcaa ccataaTTATAAACCTATCAGACTCTTGGAGGATGTCGAAAGGACACCAT CGATTATTCAAACACAACATAGTAAAGGGCCTCCCCTTAGGATCCGTAGC GTCTTTCGTTGAACGCAATACGAcatgtgattggttcgaaaaaaaaaata ggaTTTCAGACTTTTTATGAGAGGGGGGTCACGGCTAAAGTTTTTATGGC TAAAAAAATTACGTTTTAggcaaaactccaaaaaagaagaataatttacg attttttttcaacgaaaatgattgatacTATCAGATAGAGCATGAAGTTC TGAGCAAAGGATATATTACAACAAGGTTTGTACTGAAACATATCAAgtgg agtggtcagaaagtgtTTACTAcgggggagtggaggatatttcgaaaaat caaaaaaaaattttgcaccCCCACCCCACCAGGGGCGACGTGTCACATAT AAATCGGGTCTAACTACAGTAAATTTCCAGATTGTGAGTGCAATCCTATA ACCCTCAATATCAAAATGTTGTGCACTCATGTGGGGAGCATTGACTACAT TATATAGAAGGCGACAAGTGGCTTGATTTCAAACATGCAGGGGCAAAGAA tttagtgactaaggaggcgcaaccaggAGAAAATTCTGACTTTGGACTCC TGATTTCCTTCAAACATAGCTCTTTTTGGACTGATTTAGCCCAGAAATGA GGCTTTCAATGTCTGAATCATATGGAATTTTAAAAGTGAAGTCTTTCTTT GCATATACAATATCTCCGTTAAGACCTGTAGGAACCTAAATGGTGACCCC tccctaaaccctcaaaaacatttttggaccTCCCCTCCCTGAAATCCTAA ACCCCCCATAGTAGATGTATTTTACAGGATTTCTAAGTTTAAATGGGTAC atcgaaatttttgtttttgagtatAATCTCACTAAAGGTTTGCCCTTACT AACAAACTTCTTTTTATGAATCGATAAAATCCAaatttacacccctgtgt cacagacccggtggaccccccgccccactggaaaaattggccaaaaaatt gtccccggtggaaaaaaatccctaaaattccatccccactgggaaatcga TCTATGATTTTGTCCCCATTGGAAGTTGAATAAAagaaattgcacttcaa aaccatccccgcTGGAATTTTTTAGtttagctggaaacaatagattttct atcccaattggaatttcgatagaaattttcatccccactgagggaaaaag ttccaccgggggactgagacaggggtgtaaatttGCTAACAGGGTGAACA GAAGATGTGTTTaatattttcaggttttcaaCTTGACAAATAAAcacttc aaatttgtaaatcagatttgcaaaaaaatacttaaaatagATGATTTCAA AACACTCATTTCTTTCGTATTGTTTATATCTGAAAGAAGCTTTACCCTCA ATGCCCGCTAATGGGGTATTTTCACCATTGTAGATGGGATCactatatat tttttcattcgGGATGGgagtcccaccgggtctgtggtACGTGTGATATG AATGAAAAGGATGAGTTTGTTTCAATAATTAACATTCTAATGTTTTGTAT ACAAAAAATGACTGCAGTAAAAGAAATTACAATATTTTGTCTGAGCATCA TTTGATTGAATTATctacaaaaatagaaaagctaCAAAACGAAGTAACGA AAGTCAAGCCTAGATTTTTGACATTACCATCAGGGAGCCAAAAGTTTAGC CGATGCAACACCAAATAACCCATGGACAACAACCACCGTTTTCAGATCTC TTGTTGTAATAATCTGATTGTTGACCTGtagtaataaaacaattgtGGGT ATGATAAAAAATGCACATTGAACATGCAAACTATTTATACTTACACTCTT ATAGAAGAACAACCTTGATAAAACAAGGCTTGATTTTGGCAAAAAGGCTG AGGACAAGTAAGGAACAGCCGCAACCTCAGATTAAAAATCGCATAGGAAT AAGATTTCAAGCCAAATTAGTCAATAAGTGAAAAGTAAAgataataagaa caatttaagaatatcttagtcttaaaattgcaaaaaattaagaacagttg aACCACAACCAGAATTTACTAGTCCACATATAAAAAATCtcgaatttaaa tttttcgccTCTAACCTGACTACTTCGGTTCAGAAATATTCCCCTTTTCA GAAGGACTTTTGGACAAAATGTTTGTGTATCTTATAGATAGTGTGTAACC AATTAAGTACAAGCTCGAATTACCTTGGTAGGATCGGAAGCCGCCGGTCT GCCTGGTTTTTActcaaatgacagattgaaactaaaatttactcctaaat ttcgaaaagatgtatcactcgaaaacaaaggaatctgTTTCAATTCGTCG TCACAAATACGGCATATATtttaaggtttcactttttttttgcccGAGAA AGGCAAAAGATtcaattctagcccttcgggtttaaATGCTTCATTGAGTG TATAAACATACCTTTCATAAATTTGGTGATGGGATACTTTTCATTAATAA TTTTTGTGATTTCGTTTTTCACAGAAAGCTTCATCTCGGCAAGTCGTTTC AAGTTTTCGTCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTC CTCGACTTTTTTATCATGTATCTTCAGTACACCTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045228XLOC_045228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072882-exon-scaffold_86-1491911889:491322..491390TCONS_00072882-exon-scaffold_86-1491911889:491322..491390Clytia hemisphaericaexon
TCONS_00072882-exon-scaffold_86-1510915933:491322..491390TCONS_00072882-exon-scaffold_86-1510915933:491322..491390Clytia hemisphaericaexon
TCONS_00072882-exon-scaffold_86-1575043694:491322..491390TCONS_00072882-exon-scaffold_86-1575043694:491322..491390Clytia hemisphaericaexon
TCONS_00072882-exon-scaffold_86-1491911889:500200..500310TCONS_00072882-exon-scaffold_86-1491911889:500200..500310Clytia hemisphaericaexon
TCONS_00072882-exon-scaffold_86-1510915933:500200..500310TCONS_00072882-exon-scaffold_86-1510915933:500200..500310Clytia hemisphaericaexon
TCONS_00072882-exon-scaffold_86-1575043694:500200..500310TCONS_00072882-exon-scaffold_86-1575043694:500200..500310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:491322..500310 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top