TCONS_00072879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072879
Unique NameTCONS_00072879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072879 ID=TCONS_00072879|Name=TCONS_00072879|organism=Clytia hemisphaerica|type=transcript|length=2997bp
CCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTTCTTCCC
ATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACTGAAAAC
GGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTGCAATGC
AAACTGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCA
GAAAAAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAAT
TTAAGAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGA
GCATACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAG
CGTACAGGTTGAAGAAGGGATAGGTATGGGGACCCAAGAAGAAGACTCTG
atgaaaaattaccaaaagatAAAGTTCGAGAAGACACTGAAAAGATTCTG
GAAGATATTGCAAGAATTGAATTAGAAGAAAAAACTGACAAGCATAATTT
CGACTACAAAAGAACTAAATCTGTTGAAACAGTTTTAGACACTTACAGAA
AAGGGCACTACTCTACAGTCAGCTTGTCAAAGTCGTTGCTTTTTTAGCTG
TAGTCAAAGAGTTTCTGCTTCTTTCAATTCAAAATGCGTGAGTGTATTTC
AGTACATGTTGGACAAGCCGGTGTCCAAATTGGCAATTCTTGCTGGGAAC
TCTATTGTATTGAGCATGGCATCACACCAGATGGACGTATGGATACAAAC
GGAGGAGGATCAAATCCGAATGATGATTCTTTCAGTACATTTTTCAGTGA
GACAGGCGCTGGCAAACATGTTCCAAGAGCTGTATTCATTGATCTTGAAC
CATCAGTTGTCGACGAGATCAGAACTGGAACATACCGTCAACTGTTTCAC
CCTGAACAACTGATCACCGGCAAAGAAGATGCGGCTAACAATTACGCTCG
TGGTCACTACACTGTTGGCAAAGAATACATCGACCAAACATTAGACCGTA
TCCGCAAACTAGCCGATGCTTGCCGAGGATTACAAGGATTCTTGATCTTC
CATTCATTCGGTGGAGGAACCGGATCTGGTTTTTCCTCCCTCCTTATGGA
GCGTCTCTCCGTTGACTACGGTAAAAAATCAAAGTTGGAATTCGCTATCT
ATCCGGCACCACAAGTATCCACTGCCGTCGTAGAGCCTTACAATTCGATC
CTTACAACTCATACAACGTTGGATCATACAGATTGCGCTTTCATGGTTGA
TAATGAAGCCATTTACGATATCTGCAAAAAGAACTTGGACATTGAGCGAC
CAAGCTACACCAACTTGAATCGATTGATCAGCCAAATTGTCTCCTCAATT
ACAGCTTCATTAAGATTCGACGGCTCATTGAATGTTGATTTGACTGAGTT
TCAAACTAACTTAGTCCCATACCCCAGAATACATTTTCCAATGGCGACAT
ACGCTCCAATCATTTCAGCAGAGAAAGCTTTTCACGAACAAAATACTGTC
AATGAAATCACAAGCGCTTgctttgacccgcaaaatcaacTAGTCAAATG
CGATCCAAGACACGGCAAATACATGGCATGCTGTTTGTTATACCGTGGTG
ATGTTGTTCCTAAAGATGTCAATACAGCTATCGCTCAAATCAAAACCAAA
CGTACCATTCAATTTGTTGATTGGTGTCCAACTGGATTCAAAGTCGGTAT
CAACTACCAAGCACCATGTGCTGTCCCTGGAGGTGATCTTGCTAAAGTTC
AACGAGCCGTCTGTATGTTGTCTAATACAACTGCTATCGGAGAGGCTTGG
GCCCGATTGGATCATAAATTCGATTTGATGTATTCGAAACGCGCTTTTGT
TCATTGGTATGTTGGCGAAGGTATGGAAGAAGGTGAGTTTTCAGAGGCTC
GTGAAGACATGGCTGCCCTTGAAAAAGATTATGAGGAGGTTGGAACAGAT
TCTATTGATGAAGATTACGATGAACAAGAAGAATACTAAAATTGAACACT
TATTGCATAATGTCCGAAAATcggaatgttttttttccaaaatgttatTT
CAAGCGATTTCTTCCATCATATATAGATTGGAAGNGATCTTGCTAAAGTT
CAACGAGCCGTCTGTATGTTGTCTAATACAACTGCTATCGGAGAGGCTTG
GGCCCGATTGGATCATAAATTCGATTTGATGTATTCGAAACGCGCTTTTG
TTCATTGGTATGTTGGCGAAGGTATGGAAGAAGGTGAGTTTTCAGAGGCT
CGTGAAGACATGGCTGCTCTTGAAAAAGATTATGAGGAGGTTGGAACGGA
TTCTATTGATGAAGATTACGATGAACAAGAAGAATACTAAAATGATGTCC
GAAAATTGAACACTTATTGCATAATGTCCGAAAAtcggaatatttttttt
ccaaaatgttatTTCATGCGATTCCTTCCATCATATATAGAttggaagaa
gaaaattaattgtGCTAATATatatcacacccctgtctcagtaccccggt
ggaaccttttccctcagtggggatgaatatttctatcgaaatcccaatgg
ggatagaaaatctattgtttccagctcaaaaattacagtgggaatggttt
tggagtccaatTTTTTCCATCCAATTTTCAATTGGGATATAATTATAggg
caattttccagtggggacgattttttggcctatttttccaccggggtggg
ggtccaccgggtctgtgacacagggatgttaTATCATTGTAGGAATAATA
TTCATCGGAAATTTTCTAAAAGTACCAAAATTAGGAGTAGATTGTCCgaa
tttatttctgatttaacaatgggcttttccagaaaaaaccgtgcaccccc
tgttgaggaggtccaaccttttgtgacctacccccttggaattccagcaa
attttaggatcatacccctctggaattccgaatttttacaaatttttaat
cattacccccttggaattccgcttatttttgacggattttcgtctac
Run BLAST on NCBI

transcript from alignment at scaffold_86:430254..443476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072879 ID=TCONS_00072879|Name=TCONS_00072879|organism=Clytia hemisphaerica|type=transcript|length=13223bp|location=Sequence derived from alignment at scaffold_86:430254..443476+ (Clytia hemisphaerica)
CCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTTCTTCCC
ATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACTGAAAAC
GGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTAAGACCG
ATTCTTTTAatcatttcttttttcattagTGAAACTTTGTCATCCCATCA
TGAACCATGCCCGACAGCGCTTCGCTGCCATTGTATGGCTCACAGGAGGG
CAGGATGGCGATGGGAATCaggcagaaaaaaataaaaatcaacctTGAAT
ACCGCAAGAGGGAAAATCTGGTTTTTAGGTTCTTAATTTATACCTTCAAA
TTATGGTTTGGGATTATTTTTACGCTGAATAGTTGAGAGTTTATCAAGGG
TATGTATATACCGTGAAaaggggtaacttgcatcagtggaggctaacatg
catagccctcaaatgaaagacccggctggtcattaaaatatgaaaataaa
tcaaaacaaaaatggtagagaacagctgcgagcggagctgcgtatgtgta
ttttaatgaccagccaggtcattcatttgagggctatgcatgttagcctc
cactgatgcaagttaccctttctcaCGACACGGTACATTAACAGGTTTTT
TTTATAGAGGGAACCTTAAACTTGGCTCCGATGTCCGACACCGGAGTCTA
GAGCTCCTTATTTTTTCCAGACAGTTTCAGTTTTTGTAATAACAACCACT
CAACTAACATTTGTTATTCGTTATTCTGAAGGTGCAATGCAAACTGAAAG
ACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCAGAAAAAAGCA
ACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAATTTAAGAAAAT
ATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGAGCATACGTTG
AAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAGCGTACAGGTT
GAAGAAGTAAGTATTAAAAAACTTTGTGtaataccgtgaagtcgggtaac
ttgcatcagttcagtggaggctaacatgcatagccctcaaataaatgacc
tggccGGTCCTTAAaacacaaagttaaatcaaaacaaaaatggtagagta
gagctgcgagtggagctgcgtagttcatttgttttgaaattttgctgctt
tgattggtcagtcatttgagggctatgcatgttagcctccactgatggaa
gttacccgacttcaggGTAGACTTCAGTAGGATGTGATATCATTTCAAAT
CCAAAAATTGGTGATGAAAACATTATGTAATGACTCCAGAAAAACTATTA
CACAATTCTTCAGGCTGAAAAATTTAACTGACTTCAAGAAATTTTTGGGA
AAGCTGAGCTTAATTTTGTGCAATTGTTTTTCACTTTCAGGGGATAGGTA
TGGGGACCCAAGAAGAAGACTCTGatgaaaaattaccaaaagatAAAGTT
CGAGAAGACACTGAAAAGATTCTGGAAGATATTGCAAGAATTGAATTAGA
AGAAAAAACTGACAAGCATAATTTCGACTACAAAAGAACTAAATCTGTTG
AAACAGTTTTAGACACTTACAGAAAAGGTAAAGAAAAACATCACAAGCCT
GCtgcaaaaaatgaagaagaattgACCAATCtatataaagcaagaaaata
tCTAAAGCAACTCATACAGTTAgaacaaaatgatcaaaaattcTCACAAC
TCTTAGAGTTAGATATAATCAAAACTACACATGAAATACTAATGGAAAAT
CTCCTTGAGGGTAAATCTGGACAACCTGGTCATTTTAGTAAATCCCAACG
ATTTGGTAGCTTTAAAGGGAAAGAACATCACTATCCACATATTCCCGATG
ACAAAGTGACAACAGATATTTTGACAGCTCTCGTTGATTGTTACAACAGT
TCAGTTGACAAACAGAAAAGGGAAATCGACGAACTCAACTCAAAGACTTT
ACAGCAAATATTCCAATCAGCtgcaaaatttttgtttatatttttacaac
TACATCCATTTTCTGATGGTAATGGTCGGCTTGGACGATTATTATGTAGC
TACTTCTTAGAGCTTATTTGCCCATTCCCAAGCTCAATTTACAATGTCTA
CAGTCCAACAGAGAAAAGCGACTATGTCAAAGTCCTAGTTGCTGCAAGAG
AAGGAATTGAGTTTAATGTAACATTGAATAACAAATCAGAAGGGCttgat
tttttcggaaaacttTATGATCATGACGAATCCAATATGACAGCCCTTAT
CATTGAATCCAACTGgttttcttggaaaaagttTATAAATGTTCtccaaa
agaaattcaaagatgAGTGTATATTAATGTAAGAGAGTATCCAATTTAGG
AAAAAATTCTGAAGACAAATTTTTACTATATGAACGCTTTGAAAAAATAG
CAGAAATTTAGAATTCCTAAAAATAATCTTCGTTAAAATTCACATTATTA
GTCGAGTGAAACAGCGTAAAGAAAATGACACGACTTACAAGGTCctaatt
tctttcttctttgtttGTAAAACTAATTAAATCTATCAAGTTTAAAAAAT
ATCACAAGTGCTTGTGAGGCTCTTACGGTGTAAATTCGTTCATAGGGTTA
GAGGATATCATTctacaaattaaaatttagcCCTAGaaatggcaaaaaat
tttcgatACTCCATTTGAATATATCTTCCACTCCCTATGAACGGTTTAAT
CTGGAAGAACCCACTGCACATCATTCATCAATAGAAGCACCTATTTTACA
TATTATGAAACATTGCTGGTAAAtgtatttattaatttttttatattcta
ggagttttttttggaaaaactgtCTGCAAATTTCTATGATAtataatgaa
tcaacggatcctgcactaatgtacttcccagttttctcaaaggtaacgaa
tcgagtgggaattgaacccacgacctctcgcttgccgggcgattgctctc
ccaacaaacattcgttacctttgagaaaactgggaagtacattagtgcag
gatccgttgattcattacctataagtaatacgcacttgatttcacacaCT
ATGATATATATTTAGTCATTATGAAAATGGGCAAAATAAAATCATAGTTT
GTTTAACACCGTTTTTTCTAATACTCCTCTTTTAACAAAAGATATCACAA
TTTATAGAAATGACTGCTAACCTTTTTATTTTAAGATCATGTGACTGTGA
TGTGATGTCCCCTTTATTTTAACTTATTCTGACTCTTAAACTTTTAAAAT
GGCCTTAACTAAAGGATGAGAAATGGTCTTCGTTATCCTAAATAAAGTCT
AAAGTATACAAAAATTCACAGAAACTAATATTTTCCTACATGCTAAATTA
CattgggaactaattttgacaaTCAGCAAAAACCTCCAATATTTAATTTC
GGacaaaactaattttggcgaatagcGTTATTTCTTTTCCCTGTATATAA
GCATGGAATTAtcatagacactggaaaaacaatgaGCTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNattttcataccacagtggagctatgagactcacatc
taatatatgtcaatctcagctcttctcggagaaatattggaaagatattc
ccaattcaaaattccgtgtcattataagcattttgtttgattttactcat
ctgatgattttttttctcacaccagatttcataaatgtatccgTTTGGTA
Ttgtagcatttattttcaaacttttggccagcaaaagtacgaatagaaaa
agttagaaaactttttagaaattagagtattaatcatttttcaaaatcag
agtccttcgagccgccatgacagttgtcctttgcggacaaagctagaaca
tcagttgttttctgaaacaatagaaagacaatacttctctctccaccgtt
tcatttgatgtttatccagagtctctataataaatccatgataTAAGCAG
TTCTATTTTTTctgagacgattaatttgtctgagacgagcaatttagaaa
atgagcattatggaggaATGTAttttccattcatgtttcaataaatagga
tctcctccacagatcacattttaATAACTTCTcgtctcagacgatttttc
cgtctcagtataaatgaaaCTAGTGTTTCAGGTAAAGAATATAGGTTAGT
TTAATACTACACCCCTCTGTCACAGATCCGCTGGggcccagccccactgg
aaaatttggcaaaatattCGTTCCcgttgggaaaaataccctagaatttc
aactccactgagaaattgactttgatttcattccccttcgaaattcattg
tttagaaattgcacttccaaaccatccccactagattttttatccccatt
gagatttcattcgaagtttttatccccgctgtaggaaaaagtttcaccgg
ggctgtgagaaggGTGTTATACTGTAGGAGGGGTTGAGAAAAACATGTAC
AATGTTTTCCTTCTTACAAAGGAAAAATGATTTATATCTTTAGAATGAGC
TTAAAAACAAGTCGAAGACTAAAGCcacaaaacaaaatgacaaGAATTTG
AAATTAGATAAACCTATCAGAGCTCACAATCTCAGTCATGTGACCTTTTA
GCTTATTGTTCAGATAGGGGCTATAAAGATTATAAGAGAGCTTTAAGTTA
TTAACCATATTTTTCATATCCACATTTCcacatataatatttttttctca
taatATAGGGCACTACTCTACAGTCAGCTTGTCAAAGTCGTTGCTTTTTT
AGCTGTAGTCAAAGAGTTTCTGCTTCTTTCAATTCAAAATGGtaagtttt
atttcattttttgaaaattcacagACCTAAAATGTCGGCTCATGGGGATC
ACGAATGAGATCTCCATTTTTAAGATTGTAGATTAATATTTCCCATCATG
CATTTTCCAGAAAAGATAATACTGACTAACCTTCCTCATTTTCtatatta
tttaatttttgtacatccctttttgactatatttttgactttttgactat
AACTCTAGAATTACCAAGGGGTTAGAAACCTGCTTAGAACCCCTATTATA
TGAAGTTGGACACTTCCATTCTAAAATCTCTGAAACAGGCGATCTATCAT
GAAAGATTCTTAAAGTAGGGTATCTTTGTGGAACAAATTTCGTACTCGTT
CTTACAGGGGACAAGCTGgcgtttttacaagctcttattttatttggttg
gtcgttaaccagtaataaaacaattttgttactttttctaaagaacgcgt
catctctatcacttcaaatgaccatttagtgaagtatcttataaaaaact
ccagctcatccccctTGCAGAACATACATAAGCAATGTAATAAATTGTTC
GGTTTATTGACGTGAAGGGGCCGGATAGAAAATCTTGTCGAAATTTCCTT
ATCAGTCTGTCGGATCAcaagaaagtatttttttgcTCCAAAACATTAAa
tgtcatttattaaatttaaagTTTAGAGGAAATTTTGACCACGATGTTTT
AGAAAACAACGAGGTGATAACTTATTAAACTTAAAAACcaccctttttat
caatttttcgtgACTACAAAATATTTCACCCAGAATTTTAAAAGCTaaat
aaatgtaattttaatgttttctttaaaattttctacaTCCGATCAAATTC
TACTTCAACCTTCTATCACATATAGCCTCTTAAAATCTTAAGATTTAGCA
TTAAAATTGAGATATAAACAAACTAAATACCATATCAAACATTGTGGGTA
TTTTTTCACAATCCGAATTGTCTATTGTTTCCATTAGTGACATCGATTCT
AAACGACAAGATTAACAATCACACTGCCACGAGAGCTCCTACAAGAGCAT
GTTGatcaacgaaagaaaatttattgTGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgggggggggggggtactgaccttttctaattt
ccacccttaaaactgtccaaaatatctaaaaattcgACCAAAATGTGTTC
CTTTCATCTTGAAAATAAGTAAATTTGGAACCCTGCTGTCAGATATTTTC
AAAGCCTAAAAAATGGACCCTTACCAGCGACACGTCCCGATAGCCGATAC
CCAATTCTTcctactcttgggtacctaaattctgctgtattagcctcctt
ttcaaaaaatctccgcccaggacattttttttccccccccccccccgttt
attatattttgaggatttttccACCCACCTTGCTTATTCTAAACCCCTGC
TTAgtaggtacctgagagtaagTGTCCTCGGATTTCAACTGTCTTCTTTT
GAACGCCCTCTCTATCAAATTGGTTTGAACTCTGTCATTCAGTCACGACT
ACAATTTTCTTATATCGGACGAAAAAAGTTCATACTGTGAGTTCATATAA
AATTACGgtgatttctttttaattttcttcctttgtatcttttcacTAAT
TCTCTGGTCCTTATTTCTTTCATCAGCGTGAGTGTATTTCAGTACATGTT
GGACAAGCCGGTGTCCAAATTGGCAATTCTTGCTGGGAACTCTATTGTAT
TGAGCATGGCATCACACCAGATGGACGTATGGATACAAACGGAGGAGGAT
CAAATCCGAATGATGATTCTTTCAGTACATTTTTCAGTGAGACAGGCGCT
GGCAAACATGTTCCAAGAGCTGTATTCATTGATCTTGAACCATCAGTTGT
CGGTAAGTTTGTGCTTACTTGATAATTGGTGTGagccatggcgttctaaa
tttacAGGCCTAGCAAGCGTGCAGCGACTTCAATTTTGTGGGGGCTCAAT
TTttcgaagtcgttgcattgataccctgagtatcagaggttaagttttca
aagaaaatagtaacctctgaagacaaataatagaaattttatcgcgcatg
tgtcaatctaatcactgtagaaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCtacctggattgct
ccacttacccttgatccttcccttaattgctgagcatcaagcagagaggc
accaagtaccattttgggaatctttggtatgacaccaggttgaacccaca
acccaCAACATTTGGCGAAGACATGAAAAGGTATGTAGGGAATGCTTCGA
GACTTCGATGTCTACCGTACCGTAATGAGTAATGTGTGATTCTATGATCT
TTTATTTTCAGACGAGATCAGAACTGGAACATACCGTCAACTGTTTCACC
CTGAACAACTGATCACCGGCAAAGAAGATGCGGCTAACAATTACGCTCGT
GGTCACTACACTGTTGGTACGCCTTGATTTTAACACGTTCATCGGGCtcc
tttaaaaataattgaactgGTCTGggatttcatcaaaaatttgactaatc
tgaaatttgtttcaaatatattcaaattatgCATATGGACTGACGCAGAA
TTAAAAATTATGATCTTTCTACCACGAAGATACTCGTACTCGGTAACAAg
tatagactagtaaaccacgtcgttgtatttcgctgcagattaaactttca
atgggatctattttttttaatgttttctgaATACAACGACTAGTTCCAAA
TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCAAACtgtaagttt
gaaaaactttgacgtATAAATTTCAGTCTGAACTTGTTCAACAACACCAG
GGGACAACACAAAATGACAAGGTAGAAGTCTGccgggggcactgaccttg
gtGACTGACGGGGACGTGCCACGAAGgggtttgaaaagtggaccctgtga
gATGTGAATGTtaggtaaatttgggacccattcagaacgaaaaatgattt
ggtcgaaaaaatcaaaataatttcccaCTTTAACCCTGTAAATTGACAAA
AGTGACTTAAAGTAGACAAAAAAttccaatccactctcccgcggcaattt
ctattttttataagaactctttattataagcactattcccgcgttcctgt
gtccaaggaaagacagacgcttgctagtctataACAAGTACGAAAGTTTT
ATCttttatcatttatttttgtgtGTTTAGGCAAAGAATACATCGACCAA
ACATTAGACCGTATCCGCAAACTAGCCGATGCTTGCCGAGGATTACAAGG
ATTCTTGATCTTCCATTCATTCGGTGGAGGAACCGGATCTGGTTTTTCCT
CCCTCCTTATGGAGCGTCTCTCCGTTGACTACGGTAAAAAATCAAAGTTG
GAATTCGCTATCTATCCGGCACCACAAGTATCCACTGCCGTCGTAGAGCC
TTACAATTCGATCCTTACAACTCATACAACGTTGGATCATACAGATTGCG
CTTTCATGGTTGATAATGAAGCCATTTACGATATCTGCAAAAAGAACTTG
GACATTGAGCGACCAAGCTACACCAACTTGAATCGATTGATCAGCCAAAT
TGTCTCCTCAATTACAGCTTCATTAAGATTCGACGGCTCATTGAATGTTG
ATTTGACTGAGTTTCAAACTAACTTAGTCCCATACCCCAGAATACATTTT
CCAATGGCGACATACGCTCCAATCATTTCAGCAGAGAAAGCTTTTCACGA
ACAAAATACTGTCAATGAAATCACAAGGTGTTGTAGTTGTTTAATATCTT
TGACTCCATTCCAGAAGTATTTCTGTGGATTCTTTTCAGTTCAATCATTT
TGCATGAACATACATCTCGATCTATGCACTGCAAACTTAGCAAATCttaa
ctcgttttttttgtGATGATGAGTCAATTATAATACAGTGGAGTGTTTTT
GACAACTCGAagttctataactcgaatgtctccttaactcaaaaaaacaa
gttttcgtCAGGTCCCTTCAGCTCACGATGCCATACAAGCTTTACTCCat
atctcgaaatttcctttaCTCGAACAAGCTCGTGTTATGGAGACTCGACT
GcagtgaataaaaaattatgttatcTTCCCTATAGCGCTTgctttgaccc
gcaaaatcaacTAGTCAAATGCGATCCAAGACACGGCAAATACATGGCAT
GCTGTTTGTTATACCGTGGTGATGTTGTTCCTAAAGATGTCAATACAGCT
ATCGCTCAAATCAAAACCAAACGTACCATTCAATTTGTTGATTGGTGTCC
AACTGGATTCAAAGTCGGTATCAACTACCAAGCACCATGTGCTGTCCCTG
GAGGTGATCTTGCTAAAGTTCAACGAGCCGTCTGTATGTTGTCTAATACA
ACTGCTATCGGAGAGGCTTGGGCCCGATTGGATCATAAATTCGATTTGAT
GTATTCGAAACGCGCTTTTGTTCATTGGTATGTTGGCGAAGGTTAGTGat
gagttttgaaaaaattttcttcaagttttgGAATTTTTCGAACTTTCCAA
GAAAGAGAGCCAAATTTTCCATAACTTTGATTCTAATGCGTACAATcaag
gtcgtaatatttgagaaaaaaagaaaattctcacAAAATCTAGGGCGCAC
CACACCCCTCCCCCCACATTCAATTTCAAAGCCTGGACCCACAACTCTAA
cttaggttcgaagggtagagttttaactctgagtttttacACTAGACTTA
GATCTGAggaccttagaatctgaggacccaaaagttcaagaatggtccaa
caaggctcagaatatagcatCGAGTTTTATAAACCCCtcacaaattgaaa
tattcgattacatttaacaaatagcccaaaagcaactttctcgcccgaac
ttcaaatttcgaaaaacgtgaaaataaccaaaattctcattATATTTCAT
TTCGACACATATTTTAGACGTTAATGACAAAAACGACAGATGAGATGGAC
TTTTTATAAGacactttaataattggtcatttgaagtaataaaaatgacg
cgttctttagaaaaagtaacaaaattgttttattactggttgttaacgac
caaccaaatcaaataagagcttgtaaaaactccatctcgtcccaaaaAGG
ACCTAACCAACAACCAACCAATCAGCTTTCTCTTTACTATGCTTCTATAT
AGGTATGGAAGAAGGTGAGTTTTCAGAGGCTCGTGAAGACATGGCTGCCC
TTGAAAAAGATTATGAGGAGGTTGGAACAGATTCTATTGATGAAGATTAC
GATGAACAAGAAGAATACTAAAATTGAACACTTATTGCATAATGTCCGAA
AATcggaatgttttttttccaaaatgttatTTCAAGCGATTTCTTCCATC
ATATATAGATTGGAAGNGATCTTGCTAAAGTTCAACGAGCCGTCTGTATG
TTGTCTAATACAACTGCTATCGGAGAGGCTTGGGCCCGATTGGATCATAA
ATTCGATTTGATGTATTCGAAACGCGCTTTTGTTCATTGGTATGTTGGCG
AAGGTTAGTGatgagttttgaaaaaattttcttcaagttttgGAATTTTT
CGAACTTTCCAAGAAAGAGAGCCAAATTTTCCATAACTTTGATTCTAATG
CGTACAATcaaggtcgtaatatttgagaaaaaaagaaaattctcacAAAA
TCTAGGGCGCACCACACCCCTCCCCCCACATTCAATTTCAAAGCCTGGAC
CCACAACTCTAActtaggttcgaagggtagagttttaactctgagttttt
acACTAGACTTAGATCTGAggaccttagaatctgaggacccaaaagttca
agaatggtccaacaaggctcagaatatagcatCGAGGTTTATAAACCCCt
cacaaattgaaatattcgattacatttaacaaatagcccaaaagcaactt
tctcgcccgaacttcaaatttcgaaaaacgttgaaataaccAAGATTCTC
ATTATATTTCGACGCAGAAAACAACCAATCAACTTTATACTCTCTAGGTA
TGGAAGAAGGTGAGTTTTCAGAGGCTCGTGAAGACATGGCTGCTCTTGAA
AAAGATTATGAGGAGGTTGGAACGGATTCTATTGATGAAGATTACGATGA
ACAAGAAGAATACTAAAATGATGTCCGAAAATTGAACACTTATTGCATAA
TGTCCGAAAAtcggaatattttttttccaaaatgttatTTCATGCGATTC
CTTCCATCATATATAGAttggaagaagaaaattaattgtGCTAATATata
tcacacccctgtctcagtaccccggtggaaccttttccctcagtggggat
gaatatttctatcgaaatcccaatggggatagaaaatctattgtttccag
ctcaaaaattacagtgggaatggttttggagtccaatTTTTTCCATCCAA
TTTTCAATTGGGATATAATTATAgggcaattttccagtggggacgatttt
ttggcctatttttccaccggggtgggggtccaccgggtctgtgacacagg
gatgttaTATCATTGTAGGAATAATATTCATCGGAAATTTTCTAAAAGTA
CCAAAATTAGGAGTAGATTGTCCgaatttatttctgatttaacaatgggc
ttttccagaaaaaaccgtgcaccccctgttgaggaggtccaaccttttgt
gacctacccccttggaattccagcaaattttaggatcatacccctctgga
attccgaatttttacaaatttttaatcattacccccttggaattccgctt
atttttgacggattttcgtctac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045225XLOC_045225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072879-exon-scaffold_86-1491911889:430254..430394TCONS_00072879-exon-scaffold_86-1491911889:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:430254..430394TCONS_00072879-exon-scaffold_86-1510915933:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:430254..430394TCONS_00072879-exon-scaffold_86-1575043694:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:431035..431259TCONS_00072879-exon-scaffold_86-1491911889:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:431035..431259TCONS_00072879-exon-scaffold_86-1510915933:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:431035..431259TCONS_00072879-exon-scaffold_86-1575043694:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:431694..431880TCONS_00072879-exon-scaffold_86-1491911889:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:431694..431880TCONS_00072879-exon-scaffold_86-1510915933:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:431694..431880TCONS_00072879-exon-scaffold_86-1575043694:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:435362..435444TCONS_00072879-exon-scaffold_86-1491911889:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:435362..435444TCONS_00072879-exon-scaffold_86-1510915933:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:435362..435444TCONS_00072879-exon-scaffold_86-1575043694:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:437230..437455TCONS_00072879-exon-scaffold_86-1491911889:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:437230..437455TCONS_00072879-exon-scaffold_86-1510915933:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:437230..437455TCONS_00072879-exon-scaffold_86-1575043694:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:438515..438619TCONS_00072879-exon-scaffold_86-1491911889:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:438515..438619TCONS_00072879-exon-scaffold_86-1510915933:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:438515..438619TCONS_00072879-exon-scaffold_86-1575043694:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:439884..440430TCONS_00072879-exon-scaffold_86-1491911889:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:439884..440430TCONS_00072879-exon-scaffold_86-1510915933:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:439884..440430TCONS_00072879-exon-scaffold_86-1575043694:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:440789..441144TCONS_00072879-exon-scaffold_86-1491911889:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:440789..441144TCONS_00072879-exon-scaffold_86-1510915933:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:440789..441144TCONS_00072879-exon-scaffold_86-1575043694:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:441856..442206TCONS_00072879-exon-scaffold_86-1491911889:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:441856..442206TCONS_00072879-exon-scaffold_86-1510915933:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:441856..442206TCONS_00072879-exon-scaffold_86-1575043694:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:442701..443476TCONS_00072879-exon-scaffold_86-1491911889:442701..443476Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:442701..443476TCONS_00072879-exon-scaffold_86-1510915933:442701..443476Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:442701..443476TCONS_00072879-exon-scaffold_86-1575043694:442701..443476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:430254..443476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.215423	0.129949	0.121657	0.085175	0.211006	0.307211	0.134632	0	0.0698113	0	0	21.9584	32.2293	0	0.112435	23.0632	17.8744	7.5329	10.0094	33.316	32.2519	0.138596	0	0	0
Blast
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BLAST of TCONS_00072879 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 390/443 (88.04%), Postives = 419/443 (94.58%), Query Frame = 1 
Query:  634 MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTN---GGGSNPNDDSFSTFFSETGAGKHVPRAVFIDLEPSVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRIRKLADACRGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXCAFMVDNEAIYDICKKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPIISAEKAFHEQNTVNEITSACFDPQNQLVKCDPRHGKYMACCLLYRGDVVPKDVNTAIAQIKTKRTIQFVDWCPTGFKVGINYQAPCAVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDS 1953
            MRECIS+HVGQAGVQIGN+CWELYC+EHGI PDG+M ++   GGG    DDSF+TFFSETGAGKHVPRAVF+DLEP+V+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE ID  LDRIRKLAD C GLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTL+H+DCAFMVDNEAIYDIC++NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAP+ISAEKA+HEQ TV EIT+ACF+P NQ+VKCDPRHGKYMACCLLYRGDVVPKDVN AIA IKTKRTIQFVDWCPTGFKVGINYQ P  VPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG----DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439

HSP 2 Score: 150.214 bits (378), Expect = 3.388e-38
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query: 2080 GXDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDS 2304
            G DLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS
Sbjct:  365 GGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
The following BLAST results are available for this feature:
BLAST of TCONS_00072879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C3.388e-3888.04Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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