TCONS_00072879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072879
Unique NameTCONS_00072879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072879 ID=TCONS_00072879|Name=TCONS_00072879|organism=Clytia hemisphaerica|type=transcript|length=2997bp
CCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTTCTTCCC
ATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACTGAAAAC
GGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTGCAATGC
AAACTGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCA
GAAAAAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAAT
TTAAGAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGA
GCATACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAG
CGTACAGGTTGAAGAAGGGATAGGTATGGGGACCCAAGAAGAAGACTCTG
atgaaaaattaccaaaagatAAAGTTCGAGAAGACACTGAAAAGATTCTG
GAAGATATTGCAAGAATTGAATTAGAAGAAAAAACTGACAAGCATAATTT
CGACTACAAAAGAACTAAATCTGTTGAAACAGTTTTAGACACTTACAGAA
AAGGGCACTACTCTACAGTCAGCTTGTCAAAGTCGTTGCTTTTTTAGCTG
TAGTCAAAGAGTTTCTGCTTCTTTCAATTCAAAATGCGTGAGTGTATTTC
AGTACATGTTGGACAAGCCGGTGTCCAAATTGGCAATTCTTGCTGGGAAC
TCTATTGTATTGAGCATGGCATCACACCAGATGGACGTATGGATACAAAC
GGAGGAGGATCAAATCCGAATGATGATTCTTTCAGTACATTTTTCAGTGA
GACAGGCGCTGGCAAACATGTTCCAAGAGCTGTATTCATTGATCTTGAAC
CATCAGTTGTCGACGAGATCAGAACTGGAACATACCGTCAACTGTTTCAC
CCTGAACAACTGATCACCGGCAAAGAAGATGCGGCTAACAATTACGCTCG
TGGTCACTACACTGTTGGCAAAGAATACATCGACCAAACATTAGACCGTA
TCCGCAAACTAGCCGATGCTTGCCGAGGATTACAAGGATTCTTGATCTTC
CATTCATTCGGTGGAGGAACCGGATCTGGTTTTTCCTCCCTCCTTATGGA
GCGTCTCTCCGTTGACTACGGTAAAAAATCAAAGTTGGAATTCGCTATCT
ATCCGGCACCACAAGTATCCACTGCCGTCGTAGAGCCTTACAATTCGATC
CTTACAACTCATACAACGTTGGATCATACAGATTGCGCTTTCATGGTTGA
TAATGAAGCCATTTACGATATCTGCAAAAAGAACTTGGACATTGAGCGAC
CAAGCTACACCAACTTGAATCGATTGATCAGCCAAATTGTCTCCTCAATT
ACAGCTTCATTAAGATTCGACGGCTCATTGAATGTTGATTTGACTGAGTT
TCAAACTAACTTAGTCCCATACCCCAGAATACATTTTCCAATGGCGACAT
ACGCTCCAATCATTTCAGCAGAGAAAGCTTTTCACGAACAAAATACTGTC
AATGAAATCACAAGCGCTTgctttgacccgcaaaatcaacTAGTCAAATG
CGATCCAAGACACGGCAAATACATGGCATGCTGTTTGTTATACCGTGGTG
ATGTTGTTCCTAAAGATGTCAATACAGCTATCGCTCAAATCAAAACCAAA
CGTACCATTCAATTTGTTGATTGGTGTCCAACTGGATTCAAAGTCGGTAT
CAACTACCAAGCACCATGTGCTGTCCCTGGAGGTGATCTTGCTAAAGTTC
AACGAGCCGTCTGTATGTTGTCTAATACAACTGCTATCGGAGAGGCTTGG
GCCCGATTGGATCATAAATTCGATTTGATGTATTCGAAACGCGCTTTTGT
TCATTGGTATGTTGGCGAAGGTATGGAAGAAGGTGAGTTTTCAGAGGCTC
GTGAAGACATGGCTGCCCTTGAAAAAGATTATGAGGAGGTTGGAACAGAT
TCTATTGATGAAGATTACGATGAACAAGAAGAATACTAAAATTGAACACT
TATTGCATAATGTCCGAAAATcggaatgttttttttccaaaatgttatTT
CAAGCGATTTCTTCCATCATATATAGATTGGAAGNGATCTTGCTAAAGTT
CAACGAGCCGTCTGTATGTTGTCTAATACAACTGCTATCGGAGAGGCTTG
GGCCCGATTGGATCATAAATTCGATTTGATGTATTCGAAACGCGCTTTTG
TTCATTGGTATGTTGGCGAAGGTATGGAAGAAGGTGAGTTTTCAGAGGCT
CGTGAAGACATGGCTGCTCTTGAAAAAGATTATGAGGAGGTTGGAACGGA
TTCTATTGATGAAGATTACGATGAACAAGAAGAATACTAAAATGATGTCC
GAAAATTGAACACTTATTGCATAATGTCCGAAAAtcggaatatttttttt
ccaaaatgttatTTCATGCGATTCCTTCCATCATATATAGAttggaagaa
gaaaattaattgtGCTAATATatatcacacccctgtctcagtaccccggt
ggaaccttttccctcagtggggatgaatatttctatcgaaatcccaatgg
ggatagaaaatctattgtttccagctcaaaaattacagtgggaatggttt
tggagtccaatTTTTTCCATCCAATTTTCAATTGGGATATAATTATAggg
caattttccagtggggacgattttttggcctatttttccaccggggtggg
ggtccaccgggtctgtgacacagggatgttaTATCATTGTAGGAATAATA
TTCATCGGAAATTTTCTAAAAGTACCAAAATTAGGAGTAGATTGTCCgaa
tttatttctgatttaacaatgggcttttccagaaaaaaccgtgcaccccc
tgttgaggaggtccaaccttttgtgacctacccccttggaattccagcaa
attttaggatcatacccctctggaattccgaatttttacaaatttttaat
cattacccccttggaattccgcttatttttgacggattttcgtctac
Run BLAST on NCBI

transcript from alignment at scaffold_86:430254..443476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072879 ID=TCONS_00072879|Name=TCONS_00072879|organism=Clytia hemisphaerica|type=transcript|length=13223bp|location=Sequence derived from alignment at scaffold_86:430254..443476+ (Clytia hemisphaerica)
CCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTTCTTCCC ATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACTGAAAAC GGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTAAGACCG ATTCTTTTAatcatttcttttttcattagTGAAACTTTGTCATCCCATCA TGAACCATGCCCGACAGCGCTTCGCTGCCATTGTATGGCTCACAGGAGGG CAGGATGGCGATGGGAATCaggcagaaaaaaataaaaatcaacctTGAAT ACCGCAAGAGGGAAAATCTGGTTTTTAGGTTCTTAATTTATACCTTCAAA TTATGGTTTGGGATTATTTTTACGCTGAATAGTTGAGAGTTTATCAAGGG TATGTATATACCGTGAAaaggggtaacttgcatcagtggaggctaacatg catagccctcaaatgaaagacccggctggtcattaaaatatgaaaataaa tcaaaacaaaaatggtagagaacagctgcgagcggagctgcgtatgtgta ttttaatgaccagccaggtcattcatttgagggctatgcatgttagcctc cactgatgcaagttaccctttctcaCGACACGGTACATTAACAGGTTTTT TTTATAGAGGGAACCTTAAACTTGGCTCCGATGTCCGACACCGGAGTCTA GAGCTCCTTATTTTTTCCAGACAGTTTCAGTTTTTGTAATAACAACCACT CAACTAACATTTGTTATTCGTTATTCTGAAGGTGCAATGCAAACTGAAAG ACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCAGAAAAAAGCA ACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAATTTAAGAAAAT ATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGAGCATACGTTG AAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAGCGTACAGGTT GAAGAAGTAAGTATTAAAAAACTTTGTGtaataccgtgaagtcgggtaac ttgcatcagttcagtggaggctaacatgcatagccctcaaataaatgacc tggccGGTCCTTAAaacacaaagttaaatcaaaacaaaaatggtagagta gagctgcgagtggagctgcgtagttcatttgttttgaaattttgctgctt tgattggtcagtcatttgagggctatgcatgttagcctccactgatggaa gttacccgacttcaggGTAGACTTCAGTAGGATGTGATATCATTTCAAAT CCAAAAATTGGTGATGAAAACATTATGTAATGACTCCAGAAAAACTATTA CACAATTCTTCAGGCTGAAAAATTTAACTGACTTCAAGAAATTTTTGGGA AAGCTGAGCTTAATTTTGTGCAATTGTTTTTCACTTTCAGGGGATAGGTA TGGGGACCCAAGAAGAAGACTCTGatgaaaaattaccaaaagatAAAGTT CGAGAAGACACTGAAAAGATTCTGGAAGATATTGCAAGAATTGAATTAGA AGAAAAAACTGACAAGCATAATTTCGACTACAAAAGAACTAAATCTGTTG AAACAGTTTTAGACACTTACAGAAAAGGTAAAGAAAAACATCACAAGCCT GCtgcaaaaaatgaagaagaattgACCAATCtatataaagcaagaaaata tCTAAAGCAACTCATACAGTTAgaacaaaatgatcaaaaattcTCACAAC TCTTAGAGTTAGATATAATCAAAACTACACATGAAATACTAATGGAAAAT CTCCTTGAGGGTAAATCTGGACAACCTGGTCATTTTAGTAAATCCCAACG ATTTGGTAGCTTTAAAGGGAAAGAACATCACTATCCACATATTCCCGATG ACAAAGTGACAACAGATATTTTGACAGCTCTCGTTGATTGTTACAACAGT TCAGTTGACAAACAGAAAAGGGAAATCGACGAACTCAACTCAAAGACTTT ACAGCAAATATTCCAATCAGCtgcaaaatttttgtttatatttttacaac TACATCCATTTTCTGATGGTAATGGTCGGCTTGGACGATTATTATGTAGC TACTTCTTAGAGCTTATTTGCCCATTCCCAAGCTCAATTTACAATGTCTA CAGTCCAACAGAGAAAAGCGACTATGTCAAAGTCCTAGTTGCTGCAAGAG AAGGAATTGAGTTTAATGTAACATTGAATAACAAATCAGAAGGGCttgat tttttcggaaaacttTATGATCATGACGAATCCAATATGACAGCCCTTAT CATTGAATCCAACTGgttttcttggaaaaagttTATAAATGTTCtccaaa agaaattcaaagatgAGTGTATATTAATGTAAGAGAGTATCCAATTTAGG AAAAAATTCTGAAGACAAATTTTTACTATATGAACGCTTTGAAAAAATAG CAGAAATTTAGAATTCCTAAAAATAATCTTCGTTAAAATTCACATTATTA GTCGAGTGAAACAGCGTAAAGAAAATGACACGACTTACAAGGTCctaatt tctttcttctttgtttGTAAAACTAATTAAATCTATCAAGTTTAAAAAAT ATCACAAGTGCTTGTGAGGCTCTTACGGTGTAAATTCGTTCATAGGGTTA GAGGATATCATTctacaaattaaaatttagcCCTAGaaatggcaaaaaat tttcgatACTCCATTTGAATATATCTTCCACTCCCTATGAACGGTTTAAT CTGGAAGAACCCACTGCACATCATTCATCAATAGAAGCACCTATTTTACA TATTATGAAACATTGCTGGTAAAtgtatttattaatttttttatattcta ggagttttttttggaaaaactgtCTGCAAATTTCTATGATAtataatgaa tcaacggatcctgcactaatgtacttcccagttttctcaaaggtaacgaa tcgagtgggaattgaacccacgacctctcgcttgccgggcgattgctctc ccaacaaacattcgttacctttgagaaaactgggaagtacattagtgcag gatccgttgattcattacctataagtaatacgcacttgatttcacacaCT ATGATATATATTTAGTCATTATGAAAATGGGCAAAATAAAATCATAGTTT GTTTAACACCGTTTTTTCTAATACTCCTCTTTTAACAAAAGATATCACAA TTTATAGAAATGACTGCTAACCTTTTTATTTTAAGATCATGTGACTGTGA TGTGATGTCCCCTTTATTTTAACTTATTCTGACTCTTAAACTTTTAAAAT GGCCTTAACTAAAGGATGAGAAATGGTCTTCGTTATCCTAAATAAAGTCT AAAGTATACAAAAATTCACAGAAACTAATATTTTCCTACATGCTAAATTA CattgggaactaattttgacaaTCAGCAAAAACCTCCAATATTTAATTTC GGacaaaactaattttggcgaatagcGTTATTTCTTTTCCCTGTATATAA GCATGGAATTAtcatagacactggaaaaacaatgaGCTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNattttcataccacagtggagctatgagactcacatc taatatatgtcaatctcagctcttctcggagaaatattggaaagatattc ccaattcaaaattccgtgtcattataagcattttgtttgattttactcat ctgatgattttttttctcacaccagatttcataaatgtatccgTTTGGTA Ttgtagcatttattttcaaacttttggccagcaaaagtacgaatagaaaa agttagaaaactttttagaaattagagtattaatcatttttcaaaatcag agtccttcgagccgccatgacagttgtcctttgcggacaaagctagaaca tcagttgttttctgaaacaatagaaagacaatacttctctctccaccgtt tcatttgatgtttatccagagtctctataataaatccatgataTAAGCAG TTCTATTTTTTctgagacgattaatttgtctgagacgagcaatttagaaa atgagcattatggaggaATGTAttttccattcatgtttcaataaatagga tctcctccacagatcacattttaATAACTTCTcgtctcagacgatttttc cgtctcagtataaatgaaaCTAGTGTTTCAGGTAAAGAATATAGGTTAGT TTAATACTACACCCCTCTGTCACAGATCCGCTGGggcccagccccactgg aaaatttggcaaaatattCGTTCCcgttgggaaaaataccctagaatttc aactccactgagaaattgactttgatttcattccccttcgaaattcattg tttagaaattgcacttccaaaccatccccactagattttttatccccatt gagatttcattcgaagtttttatccccgctgtaggaaaaagtttcaccgg ggctgtgagaaggGTGTTATACTGTAGGAGGGGTTGAGAAAAACATGTAC AATGTTTTCCTTCTTACAAAGGAAAAATGATTTATATCTTTAGAATGAGC TTAAAAACAAGTCGAAGACTAAAGCcacaaaacaaaatgacaaGAATTTG AAATTAGATAAACCTATCAGAGCTCACAATCTCAGTCATGTGACCTTTTA GCTTATTGTTCAGATAGGGGCTATAAAGATTATAAGAGAGCTTTAAGTTA TTAACCATATTTTTCATATCCACATTTCcacatataatatttttttctca taatATAGGGCACTACTCTACAGTCAGCTTGTCAAAGTCGTTGCTTTTTT AGCTGTAGTCAAAGAGTTTCTGCTTCTTTCAATTCAAAATGGtaagtttt atttcattttttgaaaattcacagACCTAAAATGTCGGCTCATGGGGATC ACGAATGAGATCTCCATTTTTAAGATTGTAGATTAATATTTCCCATCATG CATTTTCCAGAAAAGATAATACTGACTAACCTTCCTCATTTTCtatatta tttaatttttgtacatccctttttgactatatttttgactttttgactat AACTCTAGAATTACCAAGGGGTTAGAAACCTGCTTAGAACCCCTATTATA TGAAGTTGGACACTTCCATTCTAAAATCTCTGAAACAGGCGATCTATCAT GAAAGATTCTTAAAGTAGGGTATCTTTGTGGAACAAATTTCGTACTCGTT CTTACAGGGGACAAGCTGgcgtttttacaagctcttattttatttggttg gtcgttaaccagtaataaaacaattttgttactttttctaaagaacgcgt catctctatcacttcaaatgaccatttagtgaagtatcttataaaaaact ccagctcatccccctTGCAGAACATACATAAGCAATGTAATAAATTGTTC GGTTTATTGACGTGAAGGGGCCGGATAGAAAATCTTGTCGAAATTTCCTT ATCAGTCTGTCGGATCAcaagaaagtatttttttgcTCCAAAACATTAAa tgtcatttattaaatttaaagTTTAGAGGAAATTTTGACCACGATGTTTT AGAAAACAACGAGGTGATAACTTATTAAACTTAAAAACcaccctttttat caatttttcgtgACTACAAAATATTTCACCCAGAATTTTAAAAGCTaaat aaatgtaattttaatgttttctttaaaattttctacaTCCGATCAAATTC TACTTCAACCTTCTATCACATATAGCCTCTTAAAATCTTAAGATTTAGCA TTAAAATTGAGATATAAACAAACTAAATACCATATCAAACATTGTGGGTA TTTTTTCACAATCCGAATTGTCTATTGTTTCCATTAGTGACATCGATTCT AAACGACAAGATTAACAATCACACTGCCACGAGAGCTCCTACAAGAGCAT GTTGatcaacgaaagaaaatttattgTGTTNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNgggggggggggggtactgaccttttctaattt ccacccttaaaactgtccaaaatatctaaaaattcgACCAAAATGTGTTC CTTTCATCTTGAAAATAAGTAAATTTGGAACCCTGCTGTCAGATATTTTC AAAGCCTAAAAAATGGACCCTTACCAGCGACACGTCCCGATAGCCGATAC CCAATTCTTcctactcttgggtacctaaattctgctgtattagcctcctt ttcaaaaaatctccgcccaggacattttttttccccccccccccccgttt attatattttgaggatttttccACCCACCTTGCTTATTCTAAACCCCTGC TTAgtaggtacctgagagtaagTGTCCTCGGATTTCAACTGTCTTCTTTT GAACGCCCTCTCTATCAAATTGGTTTGAACTCTGTCATTCAGTCACGACT ACAATTTTCTTATATCGGACGAAAAAAGTTCATACTGTGAGTTCATATAA AATTACGgtgatttctttttaattttcttcctttgtatcttttcacTAAT TCTCTGGTCCTTATTTCTTTCATCAGCGTGAGTGTATTTCAGTACATGTT GGACAAGCCGGTGTCCAAATTGGCAATTCTTGCTGGGAACTCTATTGTAT TGAGCATGGCATCACACCAGATGGACGTATGGATACAAACGGAGGAGGAT CAAATCCGAATGATGATTCTTTCAGTACATTTTTCAGTGAGACAGGCGCT GGCAAACATGTTCCAAGAGCTGTATTCATTGATCTTGAACCATCAGTTGT CGGTAAGTTTGTGCTTACTTGATAATTGGTGTGagccatggcgttctaaa tttacAGGCCTAGCAAGCGTGCAGCGACTTCAATTTTGTGGGGGCTCAAT TTttcgaagtcgttgcattgataccctgagtatcagaggttaagttttca aagaaaatagtaacctctgaagacaaataatagaaattttatcgcgcatg tgtcaatctaatcactgtagaaaNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCtacctggattgct ccacttacccttgatccttcccttaattgctgagcatcaagcagagaggc accaagtaccattttgggaatctttggtatgacaccaggttgaacccaca acccaCAACATTTGGCGAAGACATGAAAAGGTATGTAGGGAATGCTTCGA GACTTCGATGTCTACCGTACCGTAATGAGTAATGTGTGATTCTATGATCT TTTATTTTCAGACGAGATCAGAACTGGAACATACCGTCAACTGTTTCACC CTGAACAACTGATCACCGGCAAAGAAGATGCGGCTAACAATTACGCTCGT GGTCACTACACTGTTGGTACGCCTTGATTTTAACACGTTCATCGGGCtcc tttaaaaataattgaactgGTCTGggatttcatcaaaaatttgactaatc tgaaatttgtttcaaatatattcaaattatgCATATGGACTGACGCAGAA TTAAAAATTATGATCTTTCTACCACGAAGATACTCGTACTCGGTAACAAg tatagactagtaaaccacgtcgttgtatttcgctgcagattaaactttca atgggatctattttttttaatgttttctgaATACAACGACTAGTTCCAAA TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCAAACtgtaagttt gaaaaactttgacgtATAAATTTCAGTCTGAACTTGTTCAACAACACCAG GGGACAACACAAAATGACAAGGTAGAAGTCTGccgggggcactgaccttg gtGACTGACGGGGACGTGCCACGAAGgggtttgaaaagtggaccctgtga gATGTGAATGTtaggtaaatttgggacccattcagaacgaaaaatgattt ggtcgaaaaaatcaaaataatttcccaCTTTAACCCTGTAAATTGACAAA AGTGACTTAAAGTAGACAAAAAAttccaatccactctcccgcggcaattt ctattttttataagaactctttattataagcactattcccgcgttcctgt gtccaaggaaagacagacgcttgctagtctataACAAGTACGAAAGTTTT ATCttttatcatttatttttgtgtGTTTAGGCAAAGAATACATCGACCAA ACATTAGACCGTATCCGCAAACTAGCCGATGCTTGCCGAGGATTACAAGG ATTCTTGATCTTCCATTCATTCGGTGGAGGAACCGGATCTGGTTTTTCCT CCCTCCTTATGGAGCGTCTCTCCGTTGACTACGGTAAAAAATCAAAGTTG GAATTCGCTATCTATCCGGCACCACAAGTATCCACTGCCGTCGTAGAGCC TTACAATTCGATCCTTACAACTCATACAACGTTGGATCATACAGATTGCG CTTTCATGGTTGATAATGAAGCCATTTACGATATCTGCAAAAAGAACTTG GACATTGAGCGACCAAGCTACACCAACTTGAATCGATTGATCAGCCAAAT TGTCTCCTCAATTACAGCTTCATTAAGATTCGACGGCTCATTGAATGTTG ATTTGACTGAGTTTCAAACTAACTTAGTCCCATACCCCAGAATACATTTT CCAATGGCGACATACGCTCCAATCATTTCAGCAGAGAAAGCTTTTCACGA ACAAAATACTGTCAATGAAATCACAAGGTGTTGTAGTTGTTTAATATCTT TGACTCCATTCCAGAAGTATTTCTGTGGATTCTTTTCAGTTCAATCATTT TGCATGAACATACATCTCGATCTATGCACTGCAAACTTAGCAAATCttaa ctcgttttttttgtGATGATGAGTCAATTATAATACAGTGGAGTGTTTTT GACAACTCGAagttctataactcgaatgtctccttaactcaaaaaaacaa gttttcgtCAGGTCCCTTCAGCTCACGATGCCATACAAGCTTTACTCCat atctcgaaatttcctttaCTCGAACAAGCTCGTGTTATGGAGACTCGACT GcagtgaataaaaaattatgttatcTTCCCTATAGCGCTTgctttgaccc gcaaaatcaacTAGTCAAATGCGATCCAAGACACGGCAAATACATGGCAT GCTGTTTGTTATACCGTGGTGATGTTGTTCCTAAAGATGTCAATACAGCT ATCGCTCAAATCAAAACCAAACGTACCATTCAATTTGTTGATTGGTGTCC AACTGGATTCAAAGTCGGTATCAACTACCAAGCACCATGTGCTGTCCCTG GAGGTGATCTTGCTAAAGTTCAACGAGCCGTCTGTATGTTGTCTAATACA ACTGCTATCGGAGAGGCTTGGGCCCGATTGGATCATAAATTCGATTTGAT GTATTCGAAACGCGCTTTTGTTCATTGGTATGTTGGCGAAGGTTAGTGat gagttttgaaaaaattttcttcaagttttgGAATTTTTCGAACTTTCCAA GAAAGAGAGCCAAATTTTCCATAACTTTGATTCTAATGCGTACAATcaag gtcgtaatatttgagaaaaaaagaaaattctcacAAAATCTAGGGCGCAC CACACCCCTCCCCCCACATTCAATTTCAAAGCCTGGACCCACAACTCTAA cttaggttcgaagggtagagttttaactctgagtttttacACTAGACTTA GATCTGAggaccttagaatctgaggacccaaaagttcaagaatggtccaa caaggctcagaatatagcatCGAGTTTTATAAACCCCtcacaaattgaaa tattcgattacatttaacaaatagcccaaaagcaactttctcgcccgaac ttcaaatttcgaaaaacgtgaaaataaccaaaattctcattATATTTCAT TTCGACACATATTTTAGACGTTAATGACAAAAACGACAGATGAGATGGAC TTTTTATAAGacactttaataattggtcatttgaagtaataaaaatgacg cgttctttagaaaaagtaacaaaattgttttattactggttgttaacgac caaccaaatcaaataagagcttgtaaaaactccatctcgtcccaaaaAGG ACCTAACCAACAACCAACCAATCAGCTTTCTCTTTACTATGCTTCTATAT AGGTATGGAAGAAGGTGAGTTTTCAGAGGCTCGTGAAGACATGGCTGCCC TTGAAAAAGATTATGAGGAGGTTGGAACAGATTCTATTGATGAAGATTAC GATGAACAAGAAGAATACTAAAATTGAACACTTATTGCATAATGTCCGAA AATcggaatgttttttttccaaaatgttatTTCAAGCGATTTCTTCCATC ATATATAGATTGGAAGNGATCTTGCTAAAGTTCAACGAGCCGTCTGTATG TTGTCTAATACAACTGCTATCGGAGAGGCTTGGGCCCGATTGGATCATAA ATTCGATTTGATGTATTCGAAACGCGCTTTTGTTCATTGGTATGTTGGCG AAGGTTAGTGatgagttttgaaaaaattttcttcaagttttgGAATTTTT CGAACTTTCCAAGAAAGAGAGCCAAATTTTCCATAACTTTGATTCTAATG CGTACAATcaaggtcgtaatatttgagaaaaaaagaaaattctcacAAAA TCTAGGGCGCACCACACCCCTCCCCCCACATTCAATTTCAAAGCCTGGAC CCACAACTCTAActtaggttcgaagggtagagttttaactctgagttttt acACTAGACTTAGATCTGAggaccttagaatctgaggacccaaaagttca agaatggtccaacaaggctcagaatatagcatCGAGGTTTATAAACCCCt cacaaattgaaatattcgattacatttaacaaatagcccaaaagcaactt tctcgcccgaacttcaaatttcgaaaaacgttgaaataaccAAGATTCTC ATTATATTTCGACGCAGAAAACAACCAATCAACTTTATACTCTCTAGGTA TGGAAGAAGGTGAGTTTTCAGAGGCTCGTGAAGACATGGCTGCTCTTGAA AAAGATTATGAGGAGGTTGGAACGGATTCTATTGATGAAGATTACGATGA ACAAGAAGAATACTAAAATGATGTCCGAAAATTGAACACTTATTGCATAA TGTCCGAAAAtcggaatattttttttccaaaatgttatTTCATGCGATTC CTTCCATCATATATAGAttggaagaagaaaattaattgtGCTAATATata tcacacccctgtctcagtaccccggtggaaccttttccctcagtggggat gaatatttctatcgaaatcccaatggggatagaaaatctattgtttccag ctcaaaaattacagtgggaatggttttggagtccaatTTTTTCCATCCAA TTTTCAATTGGGATATAATTATAgggcaattttccagtggggacgatttt ttggcctatttttccaccggggtgggggtccaccgggtctgtgacacagg gatgttaTATCATTGTAGGAATAATATTCATCGGAAATTTTCTAAAAGTA CCAAAATTAGGAGTAGATTGTCCgaatttatttctgatttaacaatgggc ttttccagaaaaaaccgtgcaccccctgttgaggaggtccaaccttttgt gacctacccccttggaattccagcaaattttaggatcatacccctctgga attccgaatttttacaaatttttaatcattacccccttggaattccgctt atttttgacggattttcgtctac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045225XLOC_045225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072879-exon-scaffold_86-1491911889:430254..430394TCONS_00072879-exon-scaffold_86-1491911889:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:430254..430394TCONS_00072879-exon-scaffold_86-1510915933:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:430254..430394TCONS_00072879-exon-scaffold_86-1575043694:430254..430394Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:431035..431259TCONS_00072879-exon-scaffold_86-1491911889:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:431035..431259TCONS_00072879-exon-scaffold_86-1510915933:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:431035..431259TCONS_00072879-exon-scaffold_86-1575043694:431035..431259Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:431694..431880TCONS_00072879-exon-scaffold_86-1491911889:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:431694..431880TCONS_00072879-exon-scaffold_86-1510915933:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:431694..431880TCONS_00072879-exon-scaffold_86-1575043694:431694..431880Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:435362..435444TCONS_00072879-exon-scaffold_86-1491911889:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:435362..435444TCONS_00072879-exon-scaffold_86-1510915933:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:435362..435444TCONS_00072879-exon-scaffold_86-1575043694:435362..435444Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:437230..437455TCONS_00072879-exon-scaffold_86-1491911889:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:437230..437455TCONS_00072879-exon-scaffold_86-1510915933:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:437230..437455TCONS_00072879-exon-scaffold_86-1575043694:437230..437455Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:438515..438619TCONS_00072879-exon-scaffold_86-1491911889:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:438515..438619TCONS_00072879-exon-scaffold_86-1510915933:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:438515..438619TCONS_00072879-exon-scaffold_86-1575043694:438515..438619Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:439884..440430TCONS_00072879-exon-scaffold_86-1491911889:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:439884..440430TCONS_00072879-exon-scaffold_86-1510915933:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:439884..440430TCONS_00072879-exon-scaffold_86-1575043694:439884..440430Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:440789..441144TCONS_00072879-exon-scaffold_86-1491911889:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:440789..441144TCONS_00072879-exon-scaffold_86-1510915933:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:440789..441144TCONS_00072879-exon-scaffold_86-1575043694:440789..441144Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:441856..442206TCONS_00072879-exon-scaffold_86-1491911889:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:441856..442206TCONS_00072879-exon-scaffold_86-1510915933:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:441856..442206TCONS_00072879-exon-scaffold_86-1575043694:441856..442206Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1491911889:442701..443476TCONS_00072879-exon-scaffold_86-1491911889:442701..443476Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1510915933:442701..443476TCONS_00072879-exon-scaffold_86-1510915933:442701..443476Clytia hemisphaericaexon
TCONS_00072879-exon-scaffold_86-1575043694:442701..443476TCONS_00072879-exon-scaffold_86-1575043694:442701..443476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:430254..443476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.215423 0.129949 0.121657 0.085175 0.211006 0.307211 0.134632 0 0.0698113 0 0 21.9584 32.2293 0 0.112435 23.0632 17.8744 7.5329 10.0094 33.316 32.2519 0.138596 0 0 0
Blast
BLAST of TCONS_00072879 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 787.334 bits (2032), Expect = 0.000e+0
Identity = 390/443 (88.04%), Postives = 419/443 (94.58%), Query Frame = 1
Query:  634 MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTN---GGGSNPNDDSFSTFFSETGAGKHVPRAVFIDLEPSVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRIRKLADACRGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXCAFMVDNEAIYDICKKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPIISAEKAFHEQNTVNEITSACFDPQNQLVKCDPRHGKYMACCLLYRGDVVPKDVNTAIAQIKTKRTIQFVDWCPTGFKVGINYQAPCAVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDS 1953
            MRECIS+HVGQAGVQIGN+CWELYC+EHGI PDG+M ++   GGG    DDSF+TFFSETGAGKHVPRAVF+DLEP+V+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE ID  LDRIRKLAD C GLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTL+H+DCAFMVDNEAIYDIC++NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAP+ISAEKA+HEQ TV EIT+ACF+P NQ+VKCDPRHGKYMACCLLYRGDVVPKDVN AIA IKTKRTIQFVDWCPTGFKVGINYQ P  VPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG----DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439          

HSP 2 Score: 150.214 bits (378), Expect = 3.388e-38
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1
Query: 2080 GXDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDS 2304
            G DLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS
Sbjct:  365 GGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439          
The following BLAST results are available for this feature:
BLAST of TCONS_00072879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C3.388e-3888.04Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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