TCONS_00072873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072873
Unique NameTCONS_00072873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072873 ID=TCONS_00072873|Name=TCONS_00072873|organism=Clytia hemisphaerica|type=transcript|length=1434bp
CAACTTAAAAACATTCCAATGAGATGTTTATAAAGAACTAGCTGTTAGAA
AACCTATTATATGTTCAATTTATGTATGTAGCTAGGTCAAACCAACTTTT
CTAAACAAATAAAATCGAAAAAGCCTCCCTGGGCTAGCAGGAAGCTATAG
AACTGAGTCAATAAGAACATATCTATTTCAATAGAAATGATGGTAAAATT
AAATGTTTATCTTTTTATGTccgatttttcacaatttacccCCGCTATCA
ATGTTTTCACCCtgatttcgggtttaaaaatccgtcatccgcaaaattaa
attctcgccaaaattagcttTTTCCCTGATCCGCCATATTAAATTCCcta
cgaaaaaactttttcagccatccgccaaattaaattcccgtcaaaattta
TTTCCCTACTCTCTAATTTGAAGGCTTCCTATCGCATAACAGAGGCTAAA
CGAGTTCTTCTTTACTGCTTATTCGTTGAAATAAATAGGTTTGATAAAGT
TAAACAATCACAACACCCAATTAAATTGACTCACTCCCTTGAGGGTGTTC
GGTATTTCATACCAATTTGTTGACAACAAAAACACGTCTAATACTTTATT
GATCCAACcagaatttcttttttcaaactgagcTGAAGTGCAAAACAGGA
GTACATACAAGTTCCTTGGTGCCATTCCATTATGACCACTATCCAAATCT
CCAGAAAGTTGATAACAATTATTCGTATATGTGAAAATGAGATATATACA
ATATCATCAAAACCAATCATTTCTGTTCATTGTTTTTGTTAGCCAAGGCC
ATCTGTTGCAATTGCTTCTGAATCATATCCAAACTAGTTGTGTTTGACAT
TTCAACAAATAATGGTTTCTGTGCtttgatttctttgaaaattttcttag
ctAAGAAATGAGTGACCGAGAAATGAGTTAACATCTCTTTCAATGGTTCC
AGCCCAGGCCTCCATTGCTGACCGAGCGAGAAATAGCGTTCGCAAGAGGG
TGCCGCACAAGACGCGCCGTTTTGGTATTCAATCAGTTTTGGCacaaaat
cattttgaaaactGTAAATCAACGTTTCCTCGCTACGGTTCAATAGACGG
GGTGCCGATAACGCATTATCTGCTACGTAAACGCGTGCTTGGCATAAACG
CGTGGCGCAAATATCTCCATTAGGTTTGACAATGATGACAACACCGCGTT
GTATGTTCTTTAAGATAGCCTGTGTATTTAGGTCATCTGAATCTGGAAAA
TAGATCTGTTCTGCATCCAAGGGACCAAAGATATTGGATAATATATTTTT
GGCATCAGGCTCTTGAACCATATCAGTGGGAACAACCGGAGGAGGCTCGT
GTGATATCCGCATCCCGTTCATGTTATTAACAATCTTGCACTCGACCTCT
TTGTCAGAGAAATACAATTTGACACCAACAGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_86:392598..394110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072873 ID=TCONS_00072873|Name=TCONS_00072873|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at scaffold_86:392598..394110+ (Clytia hemisphaerica)
CAACTTAAAAACATTCCAATGAGATGTTTATAAAGAACTAGCTGTTAGAA AACCTATTATATGTTCAATTTATGTATGTAGCTAGGTCAAACCAACTTTT CTAAACAAATAAAATCGAAAAAGCCTCCCTGGGCTAGCAGGAAGCTATAG AACTGAGTCAATAAGAACATATCTATTTCAATAGAAATGATGGTAAAATT AAATGTTTATCTTTTTATGTccgatttttcacaatttacccCCGCTATCA ATGTTTTCACCCtgatttcgggtttaaaaatccgtcatccgcaaaattaa attctcgccaaaattagcttTTTCCCTGATCCGCCATATTAAATTCCcta cgaaaaaactttttcagccatccgccaaattaaattcccgtcaaaattta TTTCCCTACTCTCTAATTTGAAGGCTTCCTATCGCATAACAGAGGCTAAA CGAGTTCTTCTTTACTGCTTATTCGTTGAAATAAATAGGTTTGATAAAGT TAAACAATCACAACACCCAATTAAATTGACTCACTCCCTTGAGGGTGTTC GGTATTTCATACCAATTTGTTGACAACAAAAACACGTCTAATACTTTATT GATCCAACcagaatttcttttttcaaactgagcTGAAGTGCAAAACAGGA GTACATACAAGTTCCTTGGTGCCATTCCATTATGACCACTATCCAAATCT CCAGAAAGTTGATAACAATTATTCGTATATGTGAAAATGAGATATATACA ATATCATCAAAACCAATCATTTCTGTTCATTGTTTTTGTTAGCCAAGGCC ATCTGTTGCAATTGCTTCTGAATCATATCCAAACTAGTTGTGTTTGACAT TTCAACAAATAATGGTTTCTGTGCtttgatttctttgaaaattttcttag ctAAGAAATGAGTGACCGAGAAATGAGTTAACATCTCTTTCAATGGTTCC AGCCCAGGCCTCCATTGCTGACCGAGCGAGAAATAGCGTTCGCAAGAGGG TGCCGCACAAGACGCANTTCAAAGGTTCCAGCCCAGGCCTCCACTGCTGA CCGAGCGAGAAATAGCGTTCGCAAGAAGGTGCCGCACAAGACGCGCCGTT TTGGTATTCAATCAGTTTTGGCacaaaatcattttgaaaactGTAAATCA ACGTTTCCTCGCTACGGTTCAATAGACGGGGTGCCGATAACGCATTATCT GCTACGTAAACGCGTGCTTGGCATAAACGCGTGGCGCAAATATCTCCATT AGGTTTGACAATGATGACAACACCGCGTTGTATGTTCTTTAAGATAGCCT GTGTATTTAGGTCATCTGAATCTGGAAAATAGATCTGTTCTGCATCCAAG GGACCAAAGATATTGGATAATATATTTTTGGCATCAGGCTCTTGAACCAT ATCAGTGGGAACAACCGGAGGAGGCTCGTGTGATATCCGCATCCCGTTCA TGTTATTAACAATCTTGCACTCGACCTCTTTGTCAGAGAAATACAATTTG ACACCAACAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045223XLOC_045223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072873-exon-scaffold_86-1491911889:392598..393596TCONS_00072873-exon-scaffold_86-1491911889:392598..393596Clytia hemisphaericaexon
TCONS_00072873-exon-scaffold_86-1510915933:392598..393596TCONS_00072873-exon-scaffold_86-1510915933:392598..393596Clytia hemisphaericaexon
TCONS_00072873-exon-scaffold_86-1575043694:392598..393596TCONS_00072873-exon-scaffold_86-1575043694:392598..393596Clytia hemisphaericaexon
TCONS_00072873-exon-scaffold_86-1491911889:393676..394110TCONS_00072873-exon-scaffold_86-1491911889:393676..394110Clytia hemisphaericaexon
TCONS_00072873-exon-scaffold_86-1510915933:393676..394110TCONS_00072873-exon-scaffold_86-1510915933:393676..394110Clytia hemisphaericaexon
TCONS_00072873-exon-scaffold_86-1575043694:393676..394110TCONS_00072873-exon-scaffold_86-1575043694:393676..394110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:392598..394110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12302 0.218406 0.284161 0.0636957 1.66088 1.09094 1.02393 1.04987 0.760024 0.964783 0.279987 0.67452 0.475588 1.18419 1.56126 1.8711 1.11695 0.831608 0.912073 2.67878 0.757612 0.452101 0.852116 1.2078 0 0 1.65968 1.88929 0.583547 1.65409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019471Interferon_reg_factor-3
IPR017855SMAD_dom-like
IPR008984SMAD_FHA_domain
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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