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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072873 ID=TCONS_00072873|Name=TCONS_00072873|organism=Clytia hemisphaerica|type=transcript|length=1434bp
CAACTTAAAAACATTCCAATGAGATGTTTATAAAGAACTAGCTGTTAGAA
AACCTATTATATGTTCAATTTATGTATGTAGCTAGGTCAAACCAACTTTT
CTAAACAAATAAAATCGAAAAAGCCTCCCTGGGCTAGCAGGAAGCTATAG
AACTGAGTCAATAAGAACATATCTATTTCAATAGAAATGATGGTAAAATT
AAATGTTTATCTTTTTATGTccgatttttcacaatttacccCCGCTATCA
ATGTTTTCACCCtgatttcgggtttaaaaatccgtcatccgcaaaattaa
attctcgccaaaattagcttTTTCCCTGATCCGCCATATTAAATTCCcta
cgaaaaaactttttcagccatccgccaaattaaattcccgtcaaaattta
TTTCCCTACTCTCTAATTTGAAGGCTTCCTATCGCATAACAGAGGCTAAA
CGAGTTCTTCTTTACTGCTTATTCGTTGAAATAAATAGGTTTGATAAAGT
TAAACAATCACAACACCCAATTAAATTGACTCACTCCCTTGAGGGTGTTC
GGTATTTCATACCAATTTGTTGACAACAAAAACACGTCTAATACTTTATT
GATCCAACcagaatttcttttttcaaactgagcTGAAGTGCAAAACAGGA
GTACATACAAGTTCCTTGGTGCCATTCCATTATGACCACTATCCAAATCT
CCAGAAAGTTGATAACAATTATTCGTATATGTGAAAATGAGATATATACA
ATATCATCAAAACCAATCATTTCTGTTCATTGTTTTTGTTAGCCAAGGCC
ATCTGTTGCAATTGCTTCTGAATCATATCCAAACTAGTTGTGTTTGACAT
TTCAACAAATAATGGTTTCTGTGCtttgatttctttgaaaattttcttag
ctAAGAAATGAGTGACCGAGAAATGAGTTAACATCTCTTTCAATGGTTCC
AGCCCAGGCCTCCATTGCTGACCGAGCGAGAAATAGCGTTCGCAAGAGGG
TGCCGCACAAGACGCGCCGTTTTGGTATTCAATCAGTTTTGGCacaaaat
cattttgaaaactGTAAATCAACGTTTCCTCGCTACGGTTCAATAGACGG
GGTGCCGATAACGCATTATCTGCTACGTAAACGCGTGCTTGGCATAAACG
CGTGGCGCAAATATCTCCATTAGGTTTGACAATGATGACAACACCGCGTT
GTATGTTCTTTAAGATAGCCTGTGTATTTAGGTCATCTGAATCTGGAAAA
TAGATCTGTTCTGCATCCAAGGGACCAAAGATATTGGATAATATATTTTT
GGCATCAGGCTCTTGAACCATATCAGTGGGAACAACCGGAGGAGGCTCGT
GTGATATCCGCATCCCGTTCATGTTATTAACAATCTTGCACTCGACCTCT
TTGTCAGAGAAATACAATTTGACACCAACAGCTG Run BLAST on NCBI transcript from alignment at scaffold_86:392598..394110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072873 ID=TCONS_00072873|Name=TCONS_00072873|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at scaffold_86:392598..394110+ (Clytia hemisphaerica)
CAACTTAAAAACATTCCAATGAGATGTTTATAAAGAACTAGCTGTTAGAA
AACCTATTATATGTTCAATTTATGTATGTAGCTAGGTCAAACCAACTTTT
CTAAACAAATAAAATCGAAAAAGCCTCCCTGGGCTAGCAGGAAGCTATAG
AACTGAGTCAATAAGAACATATCTATTTCAATAGAAATGATGGTAAAATT
AAATGTTTATCTTTTTATGTccgatttttcacaatttacccCCGCTATCA
ATGTTTTCACCCtgatttcgggtttaaaaatccgtcatccgcaaaattaa
attctcgccaaaattagcttTTTCCCTGATCCGCCATATTAAATTCCcta
cgaaaaaactttttcagccatccgccaaattaaattcccgtcaaaattta
TTTCCCTACTCTCTAATTTGAAGGCTTCCTATCGCATAACAGAGGCTAAA
CGAGTTCTTCTTTACTGCTTATTCGTTGAAATAAATAGGTTTGATAAAGT
TAAACAATCACAACACCCAATTAAATTGACTCACTCCCTTGAGGGTGTTC
GGTATTTCATACCAATTTGTTGACAACAAAAACACGTCTAATACTTTATT
GATCCAACcagaatttcttttttcaaactgagcTGAAGTGCAAAACAGGA
GTACATACAAGTTCCTTGGTGCCATTCCATTATGACCACTATCCAAATCT
CCAGAAAGTTGATAACAATTATTCGTATATGTGAAAATGAGATATATACA
ATATCATCAAAACCAATCATTTCTGTTCATTGTTTTTGTTAGCCAAGGCC
ATCTGTTGCAATTGCTTCTGAATCATATCCAAACTAGTTGTGTTTGACAT
TTCAACAAATAATGGTTTCTGTGCtttgatttctttgaaaattttcttag
ctAAGAAATGAGTGACCGAGAAATGAGTTAACATCTCTTTCAATGGTTCC
AGCCCAGGCCTCCATTGCTGACCGAGCGAGAAATAGCGTTCGCAAGAGGG
TGCCGCACAAGACGCANTTCAAAGGTTCCAGCCCAGGCCTCCACTGCTGA
CCGAGCGAGAAATAGCGTTCGCAAGAAGGTGCCGCACAAGACGCGCCGTT
TTGGTATTCAATCAGTTTTGGCacaaaatcattttgaaaactGTAAATCA
ACGTTTCCTCGCTACGGTTCAATAGACGGGGTGCCGATAACGCATTATCT
GCTACGTAAACGCGTGCTTGGCATAAACGCGTGGCGCAAATATCTCCATT
AGGTTTGACAATGATGACAACACCGCGTTGTATGTTCTTTAAGATAGCCT
GTGTATTTAGGTCATCTGAATCTGGAAAATAGATCTGTTCTGCATCCAAG
GGACCAAAGATATTGGATAATATATTTTTGGCATCAGGCTCTTGAACCAT
ATCAGTGGGAACAACCGGAGGAGGCTCGTGTGATATCCGCATCCCGTTCA
TGTTATTAACAATCTTGCACTCGACCTCTTTGTCAGAGAAATACAATTTG
ACACCAACAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072873-exon-scaffold_86-1491911889:392598..393596 | TCONS_00072873-exon-scaffold_86-1491911889:392598..393596 | Clytia hemisphaerica | exon |
| TCONS_00072873-exon-scaffold_86-1510915933:392598..393596 | TCONS_00072873-exon-scaffold_86-1510915933:392598..393596 | Clytia hemisphaerica | exon |
| TCONS_00072873-exon-scaffold_86-1575043694:392598..393596 | TCONS_00072873-exon-scaffold_86-1575043694:392598..393596 | Clytia hemisphaerica | exon |
| TCONS_00072873-exon-scaffold_86-1491911889:393676..394110 | TCONS_00072873-exon-scaffold_86-1491911889:393676..394110 | Clytia hemisphaerica | exon |
| TCONS_00072873-exon-scaffold_86-1510915933:393676..394110 | TCONS_00072873-exon-scaffold_86-1510915933:393676..394110 | Clytia hemisphaerica | exon |
| TCONS_00072873-exon-scaffold_86-1575043694:393676..394110 | TCONS_00072873-exon-scaffold_86-1575043694:393676..394110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:392598..394110 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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