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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072870 ID=TCONS_00072870|Name=TCONS_00072870|organism=Clytia hemisphaerica|type=transcript|length=2586bpRun BLAST on NCBI protein sequence of TCONS_00072870-protein >TCONS_00072870-protein ID=TCONS_00072870-protein|Name=TCONS_00072870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp MNNQHIIRRLSATARQCQQQVKFTTGKRMYAAAAPVAKVANKPDDVSMKPRun BLAST on NCBI transcript from alignment at scaffold_86:338193..364709+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072870 ID=TCONS_00072870|Name=TCONS_00072870|organism=Clytia hemisphaerica|type=transcript|length=26517bp|location=Sequence derived from alignment at scaffold_86:338193..364709+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:338193..364709+ >TCONS_00072870 ID=TCONS_00072870|Name=TCONS_00072870|organism=Clytia hemisphaerica|type=CDS|length=17550bp|location=Sequence derived from alignment at scaffold_86:338193..364709+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072870 vs. Swiss-Prot (Human)
Match: NFS1 (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3) HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0 Identity = 305/402 (75.87%), Postives = 354/402 (88.06%), Query Frame = 3
Query: 222 MKPLYLDAQATTPLDPRVLDAMLPFSISQYGNPHSRTHFYGWEAEDAVENAREQVARLIGADAKEIIFTSGATESNNIAVKGVARFNRRKKKHVITTQTEHKCVLDSCRYLEGDGFDVTYLPVQSNGIIDLKLFEESLRPDTSLVSIMFVNNEIGVRQPMEEIGRICRERKIYLHTDAAQAVGKIPVDVNSMNIDLMSISGHKIYGPKGIGALYXXXXXXXXXEPQMSGGGQERGLRSGTLPAPLIVGLGKSCEIAAQEMDYDKRHVDRLSARLINGIMGQVDHVVRNGDPKMSYPGCVNLSFSCIEGESLLMALKDIALSSGSACTSASLEPSYVLRALGADDEMAHSSIRFGIGRFTTEAEVDYTIEKLVQNVNRLREMSPLWEMIQEGIDLKSIEWTQH 1427
++PLY+D QATTPLDPRVLDAMLP+ I+ YGNPHSRTH YGWE+E A+E AR+QVA LIGAD +EIIFTSGATESNNIA+KGVARF R +KKH+ITTQTEHKCVLDSCR LE +GF VTYLPVQ +GIIDLK E +++PDTSLVS+M VNNEIGV+QP+ EIGRIC RK+Y HTDAAQAVGKIP+DVN M IDLMSISGHKIYGPKG+GA+Y+RRRPRVRVE SGGGQERG+RSGT+P PL+VGLG +CE+A QEM+YD + + +LS RLI IM + VV NGDPK YPGC+NLSF+ +EGESLLMALKD+ALSSGSACTSASLEPSYVLRA+G D+++AHSSIRFGIGRFTTE EVDYT+EK +Q+V RLREMSPLWEM+Q+GIDLKSI+WTQH
Sbjct: 56 LRPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457 The following BLAST results are available for this feature:
BLAST of TCONS_00072870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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