TCONS_00072868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072868
Unique NameTCONS_00072868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2135

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072868 ID=TCONS_00072868|Name=TCONS_00072868|organism=Clytia hemisphaerica|type=transcript|length=2135bp
ATAagtcaaaaaacaatgaaaataatgaTAAGTAGATGAATCAATCCAAA
AATGTCTGAAGGAAATATCCATGTTCAAAGCCTTTTCATTTGGTGTATGG
CAGCCATTTACTTTTTTGCCTTCTCCTCACTTTACTTCCAAATCCCAGGG
TTGTATGGCAGAAAAGGGTTGATGCCAGCAGTAAAGGAACTCAAAGGGCA
ATGTTTTGATTCTGATGAAAGATGTACAAACTGGGCTGAGGTTGGAGAgt
gtaaaaataatcaaaattggATGGAAAGAAACTGTATGGTCAGCTGTAAA
GTATGTGAAAAAGCTGGTGAATTATCTATAactcaaaaattgagtaaaaa
gaaaactttgttGTGGTTTTCTCCAGCCCTTGGTCTTGATGTTTCCTCTG
GAATGGAATTAATTTGTCTCTATGGAATGGCTTTATCTATTGCTGCTATG
ATATCAAgtggttttcaaaacaaatttgtcttCATTACCCTATGGCTATT
ATATTTTTCAGTTTATCAGGTTGGCCAAACATTCCTTTGGTTCCAGTGGG
ATATCTTGCTTTTGGAAACTGGATTCTTGACAATTTTTGTGGCTCAATTA
TTTAATTCAAAAAGTGTGTATCCCAGCACCATTAGCCTGGTATGCCCATC
AACTCCCAGAATGGTTTCAAAAATTGAGTGTAGTTGCTACATATGTCATT
GAAATTGCTCTGCCATTCCTTTTCTTTCTCCCAATAAGAAGTTTGAGGAT
ATGGGGTTTCTTCTCACAGATATTACTCCAAGTGTTAATCATCATGACAG
GCAATTACACTTTCTTCAATCTTCTTACCATGACCTTATGTTTGTCATTA
ATTGATGATAGATTTCTCTTCGAATATACACCTTCATTTGTTGGGAAATA
TTTCCAGTTACCAAAAGTAACGTACGAAAAGAGAAGTATTTTCAGAAGAT
TGTCAGTGTTTTTACTAAAGACTGCTGTCACTACAACACTTATTTACTGG
ATTGTGAAGTACTTCAATATTAGATTTGCTGCAGACTCATCACAAATTCT
TTCTGATATAGCTTTCAGCAAGGAGGAGTTCAAAAGTGCTGTTACGAAAT
TGACAAGATTTTCAATCTATATGGGTATCTTATCACATCTGGTGCATTTG
GTCAGATATCTAGGAGATGCAGCAGCTGATGATAGAAAATTGAAGACATT
AATCAGAACATTTTTTGCTGCTATCTTTGCAACAGTTGCTGGTTGGATTT
TCTGTATAAGTCTAgtaCCCTTCACTCAGATTGATAGAAGTGTTCAAAAT
GACATTTGGCCAGTTGTAAAGGAGTGGAACAATGTTGTTGATTCTTATGA
ACTTGTTCATAGCTACGGTCTTTTTAGAAGTATGACTGGTGTAGGAGGAC
GACCAGAAATAATTATTGAAGGAACAAATGACTTTCGAAATGGCCCATGG
AAGgaaTACAATTTCAAATATAAACCAGGCAATTTGAAAACACCTCTCCC
AGTAGTTGCACCTCATCAACCGCGGTTAGACTGGCAGATGTGGTTTGCGG
CACTTGGATCATACCAGCATAATCCTTGGTTTATTCATCTCATTTACAAA
CTACTTGAAGGTGAAAAAGATGTTTTAGACTTGGTTGGAGAAAACCCTTT
CCCAGATAAACCTCCTATTTATATCAGAAGCCGTCTGTATACATACCATT
ACACAacattatcaaaacaaactacTGGTATCATTGATGGTGTCCTAAGA
TCAAGGAGGATAGGGTCATGGTGGAACAGAGATTCACCCAAAGAGTACAC
TCCACCTCTCTCTGTCAATGACGAGTCACTCATCAACTACATCAAAAGTT
TGGGCTGGCACAAACAGaaactGAAGAAGGAAAAACCGAATGGGAAACTC
TATCTTTTCTTAAAGGCTGTTAGAAAGCTGCTGAAGAACTTGGACCCaac
ttttttcatgtttcaaaTAATCCTATTCTCtctcattttcaaatattttt
accatttataaatactttattcagattttatagaaaaactattttagatt
ttggaatttaaacaatattttgtagattttttaggATTTTCAGGGAAAAA
CTACTTATTAGGCTTGCAACTTTTTAATAATAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:319729..331231+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072868 ID=TCONS_00072868|Name=TCONS_00072868|organism=Clytia hemisphaerica|type=transcript|length=11503bp|location=Sequence derived from alignment at scaffold_86:319729..331231+ (Clytia hemisphaerica)
ATAagtcaaaaaacaatgaaaataatgaTAAGTAGATGAATCAATCCAAA AATGTCTGAAGGAAATATCCATGTTCAAAGCCTTTTCATTTGGTGTATGG CAGCCATTTACTTTTTTGCCTTCTCCTCACTTTACTTCCAAATCCCAGGT AAGCAAAGGTTCTTctccttttttcaaaattttgtccatACGTTTTTAAG ATAACTTAATTGGATCAGCTCTTGTCATCTCTCGTTAGAACATTTTGaca atttgaaaaatcatttattcaagatttttttcaaaccaTTTTATCAAACc attataaaaatttgaaatttttgttgttgctgGTATGACATGAATAAAAG TGTTGATAAAAAGTAGTCAGAAAATGTGATGTAATTTCTCCTGCCTCAAC TTTAGGGTTGTATGGCAGAAAAGGGTTGATGCCAGCAGTAAAGGAACTCA AAGGGCAATGTTTTGATTCTGATGAAAGATGTACAAACTGGGCTGAGGTT GGAGAgtgtaaaaataatcaaaattggATGGAAAGAAACTGTATGGTCAG CTGTAAAGTATGTGAAAAAGGTGAAAGCTCTTGcgtacctatcgattcta tttTGACTCAATTTTCCCAAGGTTGAAAGAAGATTTAGTTAATATATAAT GACTCCAAATGATTTCAACCATCAAACCATGATTTTATGTTTGGTACAAT GATAGTTTTACTAAACCAATCCATCATTCTTTTTAGCTGGTGAATTATCT ATAactcaaaaattgagtaaaaagaaaactttgttGTGGTTTTCTCCAGC CCTTGGTCTTGATGTTTCCTCTGGAATGGAATTAATTTGTCTCTATGGAA TGGCTTTATCTATTGCTGCTATGATATCAAgtggttttcaaaacaaattt gtcttCATTACCCTATGGCTATTATATTTTTCAGTTTATCAGGTAAATGT TTGAAAACTTGGTTTCTTTTAATATAATAATGCCAGATAAATCAGGCAAG CAAATACCACTGCACAGTGATGTTTTTTGTAGAAAATCAAGCAGGGTTAA GAATGAAAGTGTCATGGAACGATGGTCTGATTTGAcataatttttccatt ttttgttaTTTATCAAAGGTTGGCCAAACATTCCTTTGGTTCCAGTGGTA AGTTTGGTTTTAAAGTTTCCTATCTATTCACTTGTTGCCAGCACACATCT AAAAGTGTGGCCAGTCATATGCTCGTAAAGAAAGacaactttttggaaaa tttttgaaattcagtcTTGAATGCATTACTTAATTATCCCATGAGAAACT CTTaatattcttttatataatCCTTTCAGGGATATCTTGCTTTTGGAAAC TGGATTCTTGACAATTTTTGTGGCTCAATTATTTAATTCAAAAAGTGGTA TGAATGGGTAATTAATAATAGAATTTTATGaaacaaaatcatttgaatAT TTAATCATTAGATTCAGCACATCTTTTGTGCACCTTTTTTACCTCCCTTT CCCAATATGATCTTTCTCCCAAAGTAAAAAGGCATCCCTTCACCATTATA ATCAGTTGTTGCNTTCTATTTGtgctacaaacctcaaattaggcttaaaa tgttccttgggaaaAAGTAGGAATCGAATGTAGCAATTACATACCTCTAC CAcatatataaaattcaaaagtcaGCTATTTAGGCCAAAATGGACCGACA CCAGGAAGACACTTGTTTTTGCctggaaataaaacctaaaatctgcGCTG TTGGtgctacaaacctcaaattaggcttaaaatgttccttggaaaaaagc agGATAAGAATGTAGCAATTATGTACCTCTTACCatgtatataaaattaa aaaaattaggtttGTAGGCCAAAATGGACGGAAACCGGTAAAACCCAGTG TCTTCCCGGTTTCCGTCCATTTTGACctgaaaacctaatttttttaattt tatatacatGGTTAGAAGTACATAATTGCTACATTCTTATCttgcttttt tccaaggaacattttaagcctaatttgaggtttgtagcaCGAACAGCgca gattttaggttttatttccagGCAAAAACAAGTGTCTTCCTGGTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAT TCCTACTTtttcccaaggaacattttaagcctaatttgaggtttgtagca caaatagaacagattttaggttttatttccagGCAAAGCCTAGTTTCTTN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTAAGCATAATTTGAGGTT CATAGCAccaacagaacagattttagatttttttcccaggcaaacccttt tttccccagtttcggtcaattttggccGAATATCcaaatcttttgaagtt tacatATATGGTAgaagtatataattgttacattctaatcctactttttt ccaacgaaTATTTTGACCCTAATTTGAGGCTTGTAGCACAAACAAAANNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNcaaacagaacagattttagatttttttccaggcaaaaccc tgttttttcgcaattttggtcaattttggccgaaaaacctaattttttaa gtttatatatatggtagaggtatataattgttacattctaatNNNNNNNN NNCAAGGATCATTTTGAGCCTAATTTGATGgttgtagcaccaacacagca ggttttagattttttttccaagcaaaatggcccgaaaatggcccattttg ggTATAAAAAAGGGCGGAGAACCGCCAANCTTGAATAAGGTGATAAGTTC TGGAATCATCAAGGAATTTTCAAATCATCCAAAACTTTTTCTCAAGATCC TGGtggcaaaataaaaataatttttttaaaaattaagtaGGCATAAATGG AATTAAAATATCTACACTATTCTAAAACAATATGATTGTGATAGTTGTCA ATTTTACAATCATAAGTTCAATGGAGACTTCAACCACCCTTATTTTATTA AACCTATTTTTCCTCACTTATCAACCTCCCTATAAGGANTCTTAGATTTA TGTTATTTGGGTCccaaccaaccaaaaaaaattatgcaaacttaattttg aaaaaaaaggtctctATAGCCCACTGCTAGTGGTAAGTTTGGTTTTAAAG TTTCCTATCTATTCACTTGTTGCCAGCACACATCCAAAAGTGTGGCCAGT CATATGCTCGTAAAGAAAGacaactttttggaaaatttttgaaattcggT CTTGAATGCATTACTTAATTATCCCATGAGAAACTCTTaatattctttta tataatCCTTTCAGGGATATCTTGCTTTTGGAAACTGGATTCTTGACAAT TTTTGTGGCTCAATTATTTAATTCAAAAAGTGGTATGAATGGGTAATTAA TAATAGAATTTTATGaaacaaaatcatttgaatATTTAATCATTAGATTC AGCACATCTTTTGTGCACCTTTTTTACCTCCCTTTCCCAATATGATCTTT CTCCCAAAGTAAAAAGGCATCCCTTCACCATTATAATCAGTTGTTGCTTC AAAGTAAAAGACGCTGCACCTTGAATAAGGTGATAAGTTCTGGAATCATC AAGGAATTTTCAAATCATCCAAAACTTTTTCTCAAGATCCTGGtggcaaa ataaaaataatttttttaaaaattaagtaGGCATAAATGGAATTAAAATA TCTACACTATTCTAAAACAATATGATTGTGATAGTTGTCAATTTTACAAT CATAAGTTCAATGGAGACTTCAACCACCCTTATTTTATTAAACCTATTTT TCCTCACTTATCAACCTCCCTATAAGGATTATCTAGATTTGGTTCTAGCA ATTCTGTCTAACTGAGCTAAATCGTAAGTCTTCTTCTTACTTATACAATA ACCCTCCTTTTCTTGGGCTAAAACACGcaataaaaacttctttttaGAGG ACACACAGCCATGGCTTTTTGGTTGGTGAAATGGCTCTTATTTCGCTTGA TGTTTCAGTCAGGAGTTGTCAAATTACAATCAGACTGCCCTACTTGGTGG GGTTTAACTGCCCTCAATTGGCATTATGAGTCACAAGTATGAATAAAAAT AACCCAACTCTTTATGCCAGGGTCTACTCTACAGCTTTGCAGGTTTCAAC ATCAAGTGCCCTTTTGTTCAGCGAAAAATTCTGCATTCTATAATAATGGG AATAACTCTCAAAAATGTTAGGCAGAATTTTACATTTAGTTCTATGATTT TTCAAGTCTTGATTTGCTAAGTTTAACACTCACTatccttttctttcttt ttgcctTACGTCNTTGCTAAGTTTAAAGGATAACTCTCACTATCCTTTAC TTTCTGTTAGCCTTACATGATCATTTTCTTTAACTGTTTATAGTGTATCC CAGCACCATTAGCCTGGTATGCCCATCAACTCCCAGAATGGTTTCAAAAA TTGAGTGTAGTTGCTACGTAAGTTTTGTAAATATTTGTAAACACAACCCC AAAAGTTAATCCTAGCAAAGTTGATATATTTTTGTATTCCAATGAGTCAT TAGACACAACAAACACAAAAGATTTGGGCCTTCTTTTGAATGTCTTTTTA AAtcatacacccccttctcacagacccagtaggattttttcagccacaGA CTGAAACTCAATGAGGATTGATATactcatttttttatgaatgaaaTTGG ACcagcaattttattttattttaaacaatataTTTCGAATACTTGTGATT CATCTTCAGgttctaaaatataaaatagtaaaacagttaaaaccatttag taaaaatataaatttcccATAACACGCATACATACAACCTACTCTGATCA AAGAACTAATGtaactaaaaaatcaaaatcaaaattcactAAATCAAAAG TGAATTCcacttttttatggctggggatttcaattcttttgtttccaaat taaaaaattcagtggggatgggataAATAGCAAGAAATTTTCTATTGAAG ATTGgttcatttgattattttcagtgggggacaaaaattggaggataatt ttccaccagggatgatattttggccaatttttttaGTGGGaccccagtgg gtctgtgagaaagagGTGTAATCATGCTTTcacaaattcaaaaatctttt ttcgtggGAAACTTGTGAAATCTTGATAAGCTGGGCCATATCTGGACCTC TGAATACCCCTGAATATGGAAAATATTGACTATATataatcaggctattt agagcataATTAAAGGGAATCTTTAAagcagctgaaaatattttccaaca GGAGAGTTCTGGTAAGATCCCAATGTTATTTAGTTTGACATTTGCAGatg gcattttcattttcttgtcTTGTCTTATTTCAGATATGTCATTGAAATTG CTCTGCCATTCCTTTTCTTTCTCCCAATAAGAAGTTTGAGGATATGGGGT TTCTTCTCACAGGTAAGATATTGGgtatatatttttacaaaatgtcGTTA TGTTGTTCCAAGAAATCTATAAAGGTACTTGCATCGTTTCTATGATGTCC ACAGCCATTAAAGTAGCAATTTCTGAGTTCAATGGAAATTGGAAAGATGT GTTTAGGGCACTGTTAATTAcaattttgaactttaaacaaaataataata attctaTTCTCCTATCTCAATGGAATAGGAGAAAattatttgatttattt attatcttttttGGCAGATATTACTCCAAGTGTTAATCATCATGACAGGC AATTACACTTTCTTCAATCTTCTTACCATGACCTTATGTTTGTCATTAAT TGATGATAGATTTCTCTTCGAATATACACCTTCATTTGTTGGGAAATGTA AGTTTCAGCAGTTTTTTTCTGCACAACACGTAAATTATTATAAAGCTTTT TTCTTTCCTTATGTTAATGGATAATgccttttcttttatttgattttaat gaTTGTCTTTTGGCTATGCAAATGAACAACCTCTCAATTTATCTCTTCTA AAGATAGTCAAAGCTAGCCAAAACTAACTACCTAAAATCTACTTTTACAC ACATTGAACTTAATTTCGTGATGCAAAATCTTTTCTAGATTTCCAGTTAC CAAAAGTAACGTACGAAAAGAGAAGTATTTTCAGAAGATTGTCAGTGTTT TTACTAAAGACTGCTGTCACTACAACACTTATTTACTGGATTGTGAAGTA CTTCAATATTAGATTTGCTGCAGACTCATCACAAATTCTTTCTGATATAG GTAATTATTTAGTATTTATTTTATTacttgaattttgttttttttactca AGAAAAAGCACATAAAGAAAACCAGAGAAAACTAAAAAGACCTTGATGAA TATCAAGTGACAACTATCAGTTTTGTCTGATTTCTTTTATCTGAGAATTT TAGACATTTATGATGCAAAAATGTTACACTTCTTCTATAGAGTGCCATCC TGGCTAAAAGTGCCGCATGCTAAACCCTGCAACGTAATAATTGGAATATT GAAAGCTTACACACCAGAATCAGAAAGTCTTTTGTACTAAGTACCAAAct tcaaatttccaaattcaGTTATTAAGTTGAAGTGTGTTAAAATATAGTTT TGATTCAAGGTGACAGACAAGGCATCATGGgcccggcgagccattttgag tgagagggccaacatttttttcatgctcaaaacaccttaaaacgatatcc atttggggagaataatagtttttgtggtttgatttggtctcaaaccagct tgAAATAGTAACTCTTTAAAACGTATGATatggtctaccaaaaagtgggg ggggggcatggaTCCCCCAGCCCCCCCTGTTGATGGGGCCCATGGacatc aaaaatttgaatgaattttcacattttgatttttccgtCTTCCAGCTTTC AGCAAGGAGGAGTTCAAAAGTGCTGTTACGAAATTGACAAGATTTTCAAT CTATATGGGTATCTTATCACATCTGGTGCATTTGGTCAGATATCTAGGAG AGTAAGTtcaatcaaagaaaaattcTGATTTCTTGATTCTAATGTTTCAG AGGATATTATTTAACCTGAAGCTCTTGAAAATAACCTTAATTGCATCCCT CCATCAGCCAGCTTGGATTCTAGTCTTTCTCACTCACAATTTTTGCAAAC AAGTAACCATATAAAGCAAGAATTAAGTTCTCATTTTTATCAGAAGTTTG GTTTCTTCTAAAATACTTTCATGAAACTCAACTATAAAGTTAATTTTCCA TTTGCAATCATGTTTACAGTCAAtggtgttttttattttcattgtgaTTT TCATCTTTTCAGTGCAGCAGCTGATGATAGAAAATTGAAGACATTAATCA GAACATTTTTTGCTGCTATCTTTGCAACAGTTGCTGGTTGGATTTTCTGT ATAAGTCTAGTAAGTGTACAATTCCTGGGATGTGTTAAACAGTTAGTTAT ACTTTTAGAATTTGGGATTTATCttctaatctacctgcaccaagttCAGA TTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTTAATCAATTAAGAAAGTTATTAAGATCTTT TTCTTAGTTTTAGTAGACTGAAATTCTTTATCGAGTCATTGCTCATCAAC TAATTTTCTAACaacttttcttcaattttcaggtaCCCTTCACTCAGATT GATAGAAGTGTTCAAAATGACATTTGGCCAGTTGTAAAGGAGTGGAACAA TGTTGTTGATTCTTATGAACTTGTTCATAGCTACGGTCTTTTTAGAAGGT ATGAATTACAAAATAATTCTTCAACAGTTTTTTAAGTAAAACCATATAGT AACCAGTGTTGCAAATAAGGAATTTCAAGTTGGCCGGTGATTACTCAATC AGAAAGCTCACTAATAATGAAACTATCAAAATTTCATGGGAAAAAAACAC ACATATTAGCTTAAAAATGacaccggccgttatttgcagcactggtAACT ACTCCATTCGTTTACTATAGCCACTTGTACCAAAGTAGTATATTATTAAT TCAATTTAGTATGAAAAGGATGACTAATAAAAAATTGGATTTGTTTTCAT CCTTTCAGTATGACTGGTGTAGGAGGACGACCAGAAATAATTATTGAAGG AACAAATGACTTTCGAAATGGCCCATGGAAGGTTAGAAGCTTGTTGATTT AcagaagttttttttcttcaaaatgatgATAAGAAACACTATCTCTTTAT ATTAACTCAGGTATTTGAAGTTCCAAGTACTTGTGAATTGCTCTAGTAAG Aggttctgatatgaaatattggaagaaaaattaagaatcaaaatcttttt aattttaggaaTACAATTTCAAATATAAACCAGGCAATTTGAAAACACCT CTCCCAGTAGTTGGTAAGTTATGTGTTGTACTGCTACTGAACCCAAATAC TAACTTCAGTGTAAACTGCTGCTTTACACTGGGAATTTATAAAATCGCCA TATTGACTCATAGACAAAAGAAACGAGATGGGATGAGATGGCACATCTCC TtgcaataaattttcaaaagtgctAAAAGATAAATACTGACCAGACATCC CCTTCAATGAACTTGATATCCCTTGAAAAACATAcatgaaaattttgtaa atgcaaggctcgaaataacgatttcgAGTGGGTCGGACAAAAGGTCCAAT CaaggttgctttagcttgaaaattatatgaTTATTCGGTCAgacatgaag ctatttgggttGGACAATGTCAGATGTCAGATAGTAATTTTAAACCTTGT AAATGTTATCTTTTCTCATAGCACCTCATCAACCGCGGTTAGACTGGCAG ATGTGGTTTGCGGCACTTGGATCATACCAGCATAATCCTTGGTTTATTCA TCTCATTTACAAACTACTTGAAGGTGAAAAAGATGTTTTAGACTTGGTTG GAGAAAACCCTTTCCCAGATAAACCTCCTATTTATATCAGAAGCCGTCTG TATACATACCATTACACAacattatcaaaacaaactacTGGTATCATTGA TGGTGTCCTAAGATCAAGGTAAGGACATTGTACTCAACAAAATGCCTTCT AACTCTTTGTTCATTAACTTGGGTTTGAGAAAATTACTATTTTTTAGTAA TAACTCACTCATCTAGATAACAAACAGTAGCTCTTTTAGCAGTATATTTC ACAGCGGCCAAATTTAACAATCGTCGATATCATTTGAAGTAGCATTATAT TTTGTATTCCCTGATTGAATTTACCTTCGCAAATGTTCACCATTATTATT TTGCTTTGATATTATTTTCCACCAAGGCGAAccctaaaaaatttttcatt tccgGTCCACCAAAGCTTTTTGTAATTAATAGCATTTCTTTCAGTGAAAA AGAGAACAAATATAAAGACAGAATGTGGGGTAACACTAAAAGCCAGAGag ctgatttttttcttccaaacttttttattagaaatcatGAAAAGGTGGAC CGGAAACGAAAAAAATTTTAGGGTCGGCCCAGACTCTCGGATTAAAAGCC TTGAAagaatctttgatttttttatttgttgataGGAGGATAGGGTCATG GTGGAACAGAGATTCACCCAAAGAGTACACTCCACCTCTCTCTGTCAATG ACGAGTCACTCATCAACTACATCAAAAGTTTGGGCTGGCACAAACAGGTA TGCCTACAATAACCTTTAAGAGttcctttgaaaaaagttttttcagcaCT GATTGGAGcaggtttttttgaaaaaaaagtgtgaaaattgttgaaaatca GAGTCAGTTTATATACAAAAgctatatttgaaaaacataaaatttattGG ATACAACTTTTGATACCCGTACTACTGTCTAACCCTGTCAAATTTATGCT TAGTTTCCAGAGAGGTTTCAATCCTTTTAAAAGCTGAAACCCCTCTTTTC AATTGGAAAAAGTTTTATTCCCTCTATATCCcttcttgaaaaatttagat CCTTCCTTAAAAAAGGAGGCGggacagcaaaaaaaattactgaGGCAGTG GGTCTTTCAAATGCTGTTAATACAGTCAGGGACCCTTATTCTGTTTACAC AACATCTTGtttctttcttgattttttataaaaaaattagaaacgTGCAA TTATTATTCGGACTTTATTGCTTATTATACTTCTCTGTTAGTGTTTAAAA GAGTATTGTCtagtcaattttattttttctttcagaaactGAAGAAGGAA AAACCGAATGGGAAACTCTATCTTTTCTTAAAGGCTGTTAGAAAGCTGCT GAAGAACTTGGACCCaacttttttcatgtttcaaaTAATCCTATTCTCtc tcattttcaaatatttttaccatttataaatactttattcagattttata gaaaaactattttagattttggaatttaaacaatattttgtagatttttt aggATTTTCAGGGAAAAACTACTTATTAGGCTTGCAACTTTTTAATAATA AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045219XLOC_045219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072868-exon-scaffold_86-1491911889:319729..319876TCONS_00072868-exon-scaffold_86-1491911889:319729..319876Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:319729..319876TCONS_00072868-exon-scaffold_86-1510915933:319729..319876Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:319729..319876TCONS_00072868-exon-scaffold_86-1575043694:319729..319876Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:320134..320298TCONS_00072868-exon-scaffold_86-1491911889:320134..320298Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:320134..320298TCONS_00072868-exon-scaffold_86-1510915933:320134..320298Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:320134..320298TCONS_00072868-exon-scaffold_86-1575043694:320134..320298Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:320465..320670TCONS_00072868-exon-scaffold_86-1491911889:320465..320670Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:320465..320670TCONS_00072868-exon-scaffold_86-1510915933:320465..320670Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:320465..320670TCONS_00072868-exon-scaffold_86-1575043694:320465..320670Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:320847..320875TCONS_00072868-exon-scaffold_86-1491911889:320847..320875Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:320847..320875TCONS_00072868-exon-scaffold_86-1510915933:320847..320875Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:320847..320875TCONS_00072868-exon-scaffold_86-1575043694:320847..320875Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:321058..321125TCONS_00072868-exon-scaffold_86-1491911889:321058..321125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:321058..321125TCONS_00072868-exon-scaffold_86-1510915933:321058..321125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:321058..321125TCONS_00072868-exon-scaffold_86-1575043694:321058..321125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:324672..324745TCONS_00072868-exon-scaffold_86-1491911889:324672..324745Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:324672..324745TCONS_00072868-exon-scaffold_86-1510915933:324672..324745Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:324672..324745TCONS_00072868-exon-scaffold_86-1575043694:324672..324745Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:325662..325740TCONS_00072868-exon-scaffold_86-1491911889:325662..325740Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:325662..325740TCONS_00072868-exon-scaffold_86-1510915933:325662..325740Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:325662..325740TCONS_00072868-exon-scaffold_86-1575043694:325662..325740Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:325996..326125TCONS_00072868-exon-scaffold_86-1491911889:325996..326125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:325996..326125TCONS_00072868-exon-scaffold_86-1510915933:325996..326125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:325996..326125TCONS_00072868-exon-scaffold_86-1575043694:325996..326125Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:326367..326528TCONS_00072868-exon-scaffold_86-1491911889:326367..326528Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:326367..326528TCONS_00072868-exon-scaffold_86-1510915933:326367..326528Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:326367..326528TCONS_00072868-exon-scaffold_86-1575043694:326367..326528Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:327174..327279TCONS_00072868-exon-scaffold_86-1491911889:327174..327279Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:327174..327279TCONS_00072868-exon-scaffold_86-1510915933:327174..327279Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:327174..327279TCONS_00072868-exon-scaffold_86-1575043694:327174..327279Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:327591..327687TCONS_00072868-exon-scaffold_86-1491911889:327591..327687Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:327591..327687TCONS_00072868-exon-scaffold_86-1510915933:327591..327687Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:327591..327687TCONS_00072868-exon-scaffold_86-1575043694:327591..327687Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:328411..328526TCONS_00072868-exon-scaffold_86-1491911889:328411..328526Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:328411..328526TCONS_00072868-exon-scaffold_86-1510915933:328411..328526Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:328411..328526TCONS_00072868-exon-scaffold_86-1575043694:328411..328526Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:328837..328909TCONS_00072868-exon-scaffold_86-1491911889:328837..328909Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:328837..328909TCONS_00072868-exon-scaffold_86-1510915933:328837..328909Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:328837..328909TCONS_00072868-exon-scaffold_86-1575043694:328837..328909Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:329087..329141TCONS_00072868-exon-scaffold_86-1491911889:329087..329141Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:329087..329141TCONS_00072868-exon-scaffold_86-1510915933:329087..329141Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:329087..329141TCONS_00072868-exon-scaffold_86-1575043694:329087..329141Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:329550..329796TCONS_00072868-exon-scaffold_86-1491911889:329550..329796Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:329550..329796TCONS_00072868-exon-scaffold_86-1510915933:329550..329796Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:329550..329796TCONS_00072868-exon-scaffold_86-1575043694:329550..329796Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:330314..330425TCONS_00072868-exon-scaffold_86-1491911889:330314..330425Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:330314..330425TCONS_00072868-exon-scaffold_86-1510915933:330314..330425Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:330314..330425TCONS_00072868-exon-scaffold_86-1575043694:330314..330425Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1491911889:330964..331231TCONS_00072868-exon-scaffold_86-1491911889:330964..331231Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1510915933:330964..331231TCONS_00072868-exon-scaffold_86-1510915933:330964..331231Clytia hemisphaericaexon
TCONS_00072868-exon-scaffold_86-1575043694:330964..331231TCONS_00072868-exon-scaffold_86-1575043694:330964..331231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:319729..331231 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8662 2.52966 0.606347 0.560573 2.23088 0.93358 1.06472 0.934623 0.601643 1.29501 0.327596 0.750406 0.000624319 0.78567 0.852819 1.62799 0.914509 0.918541 0.28777 0.323774 1.67194 1.01841 3.24805 2.51792 1.17671 1.65384 1.33831 2.20232 2.55842 1.3344
Blast
BLAST of TCONS_00072868 vs. Swiss-Prot (Human)
Match: LMF2 (Lipase maturation factor 2 OS=Homo sapiens GN=LMF2 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 3.333e-84
Identity = 180/489 (36.81%), Postives = 260/489 (53.17%), Query Frame = 2
Query:  542 SSGISCFWKLDS*QFLWLNYLIQKVCIPAPLAWYAHQLPEWFQKLSVVATYVIEIALPFLFFLPIRSLRIWGFFSQILLQVLIIMTGNYTFFNLLTMTLCLSLIDDRFLFEYTPSFVGK---YFQLPKVTYEKRSIFRRLSVFLLKTAVTTTLIYWIVKYFNIRFAADSSQILSDIAFSKEEFKSAVTKLTRFSIYMGILSHLVHLVRYL---GDAAADDRKLKTLIRTFFAAIFATVAGWIFCISLVPFTQIDRSVQNDIWPVVKEWNNVVDSYELVHSYGLFRSMTGVGGRPEIIIEGTNDFRNGPWKEYNFKYKPGNLKTPLPVVAPHQPRLDWQMWFAALGSYQHNPWFIHLIYKLLEGEKDVLDLVGEN----PFPDKPPIYIRSRLYTYHYTTLSKQTTGIIDGVLRSRRIGSWWNRDSPKEYTPPLSVNDESLINYIKSLGWH-KQKLKKEKPNGKLYLFLKAVRKLLKNLDPTFFMFQIIL 1975
            +S    +W L +     L Y  +  C+P P AW+AH LP W  KLSVVAT++IEIA+P LFF PIR LR+  F+SQ+LLQVLII+TGNY FFNL+T+ L  +L+DD+ L    P    +       PK      S+   L+V+ L       L Y  V YF +        I S   F+  +F   +  LT  ++++G+ S +  L+  L          RKL  +++       ATVA  +F ISLVP++ ++      +W         V+  +L +SYGLFR MTG+GGRPE+++EG+ D  +  W E  F YKPGNL  P PVV PHQPRLDWQMWFAALG + H+PWF  L+ +LL+G++ V+ LV       PF  +PP Y+R++ Y Y ++   +Q              G WW R   +E+ P +S+ D +L   ++  G   K   +    N  L   L   R  L  L+    ++ +++
Sbjct:  188 TSRCPAWWGLTA-----LTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLVLTTALLDDQHL-AAEPGHGSRKKTATSWPKALLATLSLLLELAVYGL-------LAYGTVHYFGLEVDWQQRTIHSRTTFTFHQFSQWLKTLTLPTVWLGVASLVWELLSALWRWTQVRGWLRKLSAVVQLSLVGT-ATVA--LFLISLVPYSYVEPGTHGRLWTGAHRLFGAVEHLQLANSYGLFRRMTGLGGRPEVVLEGSYDGHH--WTEIEFMYKPGNLSRPPPVVVPHQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPFHKQPPTYVRAQRYKYWFSQPGEQ--------------GQWWRRQWVEEFFPSVSLGDPTLETLLRQFGLQEKSPPRTRSANSTLAQALHWTRSQLSPLEAPALLWGLLM 644          

HSP 2 Score: 103.219 bits (256), Expect = 1.067e-22
Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   61 GNIHVQSLFIWCMAAIYFFAFSSLYFQIPGLYGRKGLMPAVKELKGQCFDSDERCTNWAEVGECKNNQNWMERNCMVSCKVCEKAGELSITQKLSKKKTLLWFSPALGLDVSSGMELICLYGMALSIAAMISSGFQNKFVFITLWLLYFSVYQVGQTFLWFQWDILLLETGFLTIFVAQL 600
            G+   + LF+  +AA++ FAF+SLY QIPGLYG +G++PA + L+ Q              G+ +  Q W                         +  TLLW +P LGLD + G+EL+ L G  +++ A++ S  ++  +++ LW  Y S  QVGQ FL+FQWD LLLETGFL + VA L
Sbjct:    3 GSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYGPEGILPARRTLRPQ--------------GKGRWQQLW-------------------------ETPTLLWEAPRLGLDTAQGLELLSLLGALVALGALLLSPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLVAPL 143          
The following BLAST results are available for this feature:
BLAST of TCONS_00072868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMF23.333e-8436.81Lipase maturation factor 2 OS=Homo sapiens GN=LMF2... [more]
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