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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072868 ID=TCONS_00072868|Name=TCONS_00072868|organism=Clytia hemisphaerica|type=transcript|length=2135bpRun BLAST on NCBI transcript from alignment at scaffold_86:319729..331231+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072868 ID=TCONS_00072868|Name=TCONS_00072868|organism=Clytia hemisphaerica|type=transcript|length=11503bp|location=Sequence derived from alignment at scaffold_86:319729..331231+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072868 vs. Swiss-Prot (Human)
Match: LMF2 (Lipase maturation factor 2 OS=Homo sapiens GN=LMF2 PE=1 SV=2) HSP 1 Score: 283.878 bits (725), Expect = 3.333e-84 Identity = 180/489 (36.81%), Postives = 260/489 (53.17%), Query Frame = 2
Query: 542 SSGISCFWKLDS*QFLWLNYLIQKVCIPAPLAWYAHQLPEWFQKLSVVATYVIEIALPFLFFLPIRSLRIWGFFSQILLQVLIIMTGNYTFFNLLTMTLCLSLIDDRFLFEYTPSFVGK---YFQLPKVTYEKRSIFRRLSVFLLKTAVTTTLIYWIVKYFNIRFAADSSQILSDIAFSKEEFKSAVTKLTRFSIYMGILSHLVHLVRYL---GDAAADDRKLKTLIRTFFAAIFATVAGWIFCISLVPFTQIDRSVQNDIWPVVKEWNNVVDSYELVHSYGLFRSMTGVGGRPEIIIEGTNDFRNGPWKEYNFKYKPGNLKTPLPVVAPHQPRLDWQMWFAALGSYQHNPWFIHLIYKLLEGEKDVLDLVGEN----PFPDKPPIYIRSRLYTYHYTTLSKQTTGIIDGVLRSRRIGSWWNRDSPKEYTPPLSVNDESLINYIKSLGWH-KQKLKKEKPNGKLYLFLKAVRKLLKNLDPTFFMFQIIL 1975
+S +W L + L Y + C+P P AW+AH LP W KLSVVAT++IEIA+P LFF PIR LR+ F+SQ+LLQVLII+TGNY FFNL+T+ L +L+DD+ L P + PK S+ L+V+ L L Y V YF + I S F+ +F + LT ++++G+ S + L+ L RKL +++ ATVA +F ISLVP++ ++ +W V+ +L +SYGLFR MTG+GGRPE+++EG+ D + W E F YKPGNL P PVV PHQPRLDWQMWFAALG + H+PWF L+ +LL+G++ V+ LV PF +PP Y+R++ Y Y ++ +Q G WW R +E+ P +S+ D +L ++ G K + N L L R L L+ ++ +++
Sbjct: 188 TSRCPAWWGLTA-----LTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLVLTTALLDDQHL-AAEPGHGSRKKTATSWPKALLATLSLLLELAVYGL-------LAYGTVHYFGLEVDWQQRTIHSRTTFTFHQFSQWLKTLTLPTVWLGVASLVWELLSALWRWTQVRGWLRKLSAVVQLSLVGT-ATVA--LFLISLVPYSYVEPGTHGRLWTGAHRLFGAVEHLQLANSYGLFRRMTGLGGRPEVVLEGSYDGHH--WTEIEFMYKPGNLSRPPPVVVPHQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPFHKQPPTYVRAQRYKYWFSQPGEQ--------------GQWWRRQWVEEFFPSVSLGDPTLETLLRQFGLQEKSPPRTRSANSTLAQALHWTRSQLSPLEAPALLWGLLM 644 HSP 2 Score: 103.219 bits (256), Expect = 1.067e-22 Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 1
Query: 61 GNIHVQSLFIWCMAAIYFFAFSSLYFQIPGLYGRKGLMPAVKELKGQCFDSDERCTNWAEVGECKNNQNWMERNCMVSCKVCEKAGELSITQKLSKKKTLLWFSPALGLDVSSGMELICLYGMALSIAAMISSGFQNKFVFITLWLLYFSVYQVGQTFLWFQWDILLLETGFLTIFVAQL 600
G+ + LF+ +AA++ FAF+SLY QIPGLYG +G++PA + L+ Q G+ + Q W + TLLW +P LGLD + G+EL+ L G +++ A++ S ++ +++ LW Y S QVGQ FL+FQWD LLLETGFL + VA L
Sbjct: 3 GSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYGPEGILPARRTLRPQ--------------GKGRWQQLW-------------------------ETPTLLWEAPRLGLDTAQGLELLSLLGALVALGALLLSPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLVAPL 143 The following BLAST results are available for this feature:
BLAST of TCONS_00072868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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