TCONS_00072857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072857
Unique NameTCONS_00072857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072857 ID=TCONS_00072857|Name=TCONS_00072857|organism=Clytia hemisphaerica|type=transcript|length=1283bp
gggtagatcaaagaaaaaataatatatcctccacaccccatgaacgaatt
ttttctggaagagcccaatcccGGAatcccaaaaattgaaaaaaatagta
aCGCCGTCACAACAGATTGtccaggttcaaataccggcataatgacaaaa
tagaaggccaaataccgtcaccgtctgattttaaaatactgttttcccgt
cttttttcctgtcaaatcccgtaataccgtactaaaaaatggccaatccc
gtcacaccgtaaaagtacaaaccccccccaAATTGAACCGCCCTAAATAA
CTTGAACCGCCCAATTTGCCAAACACAGGAGAAAGAATATGTAACTCGAA
TCAGGAATTAGCTTCATTATGAATACAATTTTATAAGCTCCCTGaacaaa
aaacagaaaattaaaACAGGCCTGGCTCCTAGAATCCCCATTCAAGTGCT
TAGGTCTGCAGTACTGGGCTGTTTTTCATACTAAATTTATTTCTAAGAAC
GATTATGTGTGACATGCAATTCTCATTTTAGCTACACTAAAACATAGATC
AAAATGCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGAT
TGATGTGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAG
ATCTTGGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTA
AATGCTGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGA
CGACCCACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACG
ATATCGAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTC
TTTGAATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGA
TGTTTGCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAG
AGATCCGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAG
GAACAAGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAAATTTGATC
AAGTAATTTTTAAGTGTTACTCGACTTCACTTTCAAAACATCAGGGACAT
CAAAAAGTATCTATTCAAATCTAATACTTTATTTTGTTTATACGTTTCTA
ATTTCTTACGTTTATATTTAATTTCATACCATTAAACTGTGTGTTTAAGT
TTATATAATAAAAGCTTTCAAACTTAAAGTTGTGTTGtgtgtttaaaaat
ctttctcCAAATGTTTTATCTCTAAAGTTTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_86:318202..319484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072857 ID=TCONS_00072857|Name=TCONS_00072857|organism=Clytia hemisphaerica|type=transcript|length=1283bp|location=Sequence derived from alignment at scaffold_86:318202..319484+ (Clytia hemisphaerica)
gggtagatcaaagaaaaaataatatatcctccacaccccatgaacgaatt
ttttctggaagagcccaatcccGGAatcccaaaaattgaaaaaaatagta
aCGCCGTCACAACAGATTGtccaggttcaaataccggcataatgacaaaa
tagaaggccaaataccgtcaccgtctgattttaaaatactgttttcccgt
cttttttcctgtcaaatcccgtaataccgtactaaaaaatggccaatccc
gtcacaccgtaaaagtacaaaccccccccaAATTGAACCGCCCTAAATAA
CTTGAACCGCCCAATTTGCCAAACACAGGAGAAAGAATATGTAACTCGAA
TCAGGAATTAGCTTCATTATGAATACAATTTTATAAGCTCCCTGaacaaa
aaacagaaaattaaaACAGGCCTGGCTCCTAGAATCCCCATTCAAGTGCT
TAGGTCTGCAGTACTGGGCTGTTTTTCATACTAAATTTATTTCTAAGAAC
GATTATGTGTGACATGCAATTCTCATTTTAGCTACACTAAAACATAGATC
AAAATGCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGAT
TGATGTGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAG
ATCTTGGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTA
AATGCTGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGA
CGACCCACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACG
ATATCGAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTC
TTTGAATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGA
TGTTTGCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAG
AGATCCGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAG
GAACAAGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAAATTTGATC
AAGTAATTTTTAAGTGTTACTCGACTTCACTTTCAAAACATCAGGGACAT
CAAAAAGTATCTATTCAAATCTAATACTTTATTTTGTTTATACGTTTCTA
ATTTCTTACGTTTATATTTAATTTCATACCATTAAACTGTGTGTTTAAGT
TTATATAATAAAAGCTTTCAAACTTAAAGTTGTGTTGtgtgtttaaaaat
ctttctcCAAATGTTTTATCTCTAAAGTTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045218XLOC_045218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072857-exon-scaffold_86-1491911889:318202..319484TCONS_00072857-exon-scaffold_86-1491911889:318202..319484Clytia hemisphaericaexon
TCONS_00072857-exon-scaffold_86-1510915933:318202..319484TCONS_00072857-exon-scaffold_86-1510915933:318202..319484Clytia hemisphaericaexon
TCONS_00072857-exon-scaffold_86-1575043694:318202..319484TCONS_00072857-exon-scaffold_86-1575043694:318202..319484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:318202..319484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.2111	38.4369	53.835	56.6578	2.33258	1.55819	1.99731	1.21265	17.972	16.253	17.3878	12.7367	11.0816	8.37108	9.39443	11.229	12.403	12.3239	6.72328	8.77695	14.4697	12.8984	19.456	15.1413	1.62263	1.67143	19.2669	15.2684	13.1445	13.3933
Blast
[Close]
BLAST of TCONS_00072857 vs. Swiss-Prot (Human)
Match: SKP1 (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 7.398e-75
Identity = 141/163 (86.50%), Postives = 153/163 (93.87%), Query Frame = 2 
Query:  554 MPTIRLQSSDSEIFEIDVEIAKASMTIKTMXXXXXXXXXXXX-PIPLPNVNAAILRKVIQWATHHXXXXXXXXXXXXXXXRTDDIETWDQEFLKVDQGTLFELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEWCEDK 1039
            MP+I+LQSSD EIFE+DVEIAK S+TIKTMLEDLG+D++ D+ P+PLPNVNAAIL+KVIQW THHKDDPPPPEDDENKEKRTDDI  WDQEFLKVDQGTLFELILAANYLDIKGLLDV CKTVANMIKGKTPEEIRKTFNIKNDFT EEE QVRKEN+WCE+K
Sbjct:    1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
The following BLAST results are available for this feature:
BLAST of TCONS_00072857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKP17.398e-7586.50S-phase kinase-associated protein 1 OS=Homo sapien... [more]
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