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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072849 ID=TCONS_00072849|Name=TCONS_00072849|organism=Clytia hemisphaerica|type=transcript|length=1959bp
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTGCTTCATAT
CATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGATATGGAAGT
CCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGA
GTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTA
CCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCT
ATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGA
AAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAAT
GACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCA
AACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacg
atgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATCT
AAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCAAAAGAGTTCAC
AGTGCTGTCATGGAACATTGATGGTTTGGAAGAAGAATATTTGATGGAAA
GATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATTGTG
ATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattctctt
cCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATGTAA
TCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGGT
TGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAACT
ATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAAGTT
TAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgttttgaa
acaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGACTT
GAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAAA
TTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTACT
TGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAAACC
ACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATCCAA
TGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGGG
ATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCCAGA
TGACTGACGAGGAATTATATggtgaaaaaatctttttcatcatACGTTTA
ATTCCCTATGATATTATTTTTGGAcatacctcggaggtcctataaattaa
ctgatgtccgtccgttcatccgtccgtccgtccgtctgttatcagctttt
ctcaggattggctcattagttgtttctaattttttgctcaaagatgcgta
ttcgcaatgcttaaaacatgaccgagttcgatttttgagaaaaaaaattt
tccagacaaaaatgccggaaatttccgtttttgcagatttttattacaaa
gattatttataagaatgtccacgattaagcatggttcaatttttaatgaa
actgattttggtacaggaactttctaaaaatcgctagaacagccgagaat
cgccggatttcttgaattattattattaatattattctgcattttcatac
tattgttgtcatttttcaattgtcttattacatatcttcaggtaggtcca
ttcagcatgtagcttgtttatATTATGTTTTACGTTTTCGAGATTGTAAA
TATCGTGTTCAtagattatatttttttatcaatcgTTTATTTAAAGAATT
ATATTATAC Run BLAST on NCBI transcript from alignment at scaffold_86:293407..298845+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072849 ID=TCONS_00072849|Name=TCONS_00072849|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at scaffold_86:293407..298845+ (Clytia hemisphaerica)
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGTAAGACGTAAAGGGAAACTAAAACTTTGATAAAAACTTACCCATAAT
GTTTTTAGTAAGCTCAACTAGGAAGAAATTTTAAGCAATTGGACAATACC
AACCGAGAAAACACCCTTTTCAccgatttaaaatttttctttttgttaaa
gTCCATTTTACAACATAAGTAACCCTATAAATGAGCCAGTTGGTCATTCT
TCTATTATCAGTTTTTCttgtgattggctcattagctttttatgatattt
tgcatGACGATGctgatgatttgattttgttagGATTACTCAAATGGGAT
TAGTCGACGTAGTTCACAAATGTTGATTTTGTTTGATCTTCACTGACCAT
TATTTTACAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTG
CTTCATATCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGAT
ATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGTTTTTTAG
TACCTTGTTGACAAATTTCTCTTCGCGAACCAATGTTTTGTAAATCAATT
TAACCAGATTAGTTGTTCAGCTCAGTAGAGTAtcaagtaataagattctt
ggCTTTTACACATGTTTTATCCAAGTTTGGTTTTTTTGAAATAcactatt
ttttttctcttgtcGTTCAATTTTGTTAGGGAAGTCGTTGTACTGAGTGA
TGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGA
AGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATTG
AATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAGC
AAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGACA
AAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACA
AATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatga
tgatttAGCGTTTTACGGAATCTCAGTAAGCTCTAAGgacaattcaaatt
ttacttAAAGATAAACAATTGATATGCTATATTGCTTTAATTGATCTTGG
TCAATCAACGTGGTATTCTATCTAGTTGTCGATACAATAACACTAAGAGA
GCCCTGTTGTAccatataaataaaaaattgattggAGTACCGCAAATTTT
TTCCGTCAGTAGATgcagacctgatttagcggccgaagacctgattaGAA
AGTTACCGGCCTAATCTGAAGTTAGGGTAGTATGAATATATTGCACCTCT
CGGAATAGCATCAGTTGCGATGGCCCAGTGGTTACCACAGTGGTCTTGTA
GACGGGAGATGAGTAGTTCAATATGAGGTATTCGCAttaatttcattctt
tttagtttaaaatcttttaacttgttttttttttcaaaacatttccattg
aaacatcatataaAAATCTTGCTTGAATTCATATAAAGGATATAAAACAA
ATTTCTACTCAATTTATTTTCTGCAAGTCTTCGGCCTAGATACGAACGCT
AAATCAGGTCTGTGACCGTTAGTTTAGGTTTGCGTTCGCTGATTGAAAAG
GAATCTGTGGAGGTTCGTGCATATAAAAGTACCCCACATCTGTTATATAA
CTGTATCATTTTAATTCGTTAATGATTTTATTATTCAGGCTCAGGAAGAT
GTTTCATCTAAAGCTTCTCCGTCAGTGTAAGCATCATATTTTGTTAAAGC
AGAATGCAGTACCCTTTTTACAAAGACTTTTGTCCTGTGTTTCacaaaaa
ttagtgaaaatgggggggggggttataaATGAATTAAATTCAACAAAtca
agtctttttttttgctccATTCGCAAAAGTGAATActcgcgaaattcaaa
aatttcggcAAAAGCTTTTTTACGCAAAAGATTTTCCCCTAGAACTATGT
TTTTGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGC
TCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTG
ATGGTTTGGAAGAAGAATATTTGATGGAAAGATTCCAAGGAGCTCTGAAA
GACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCA
ACAAACATTCCTctctctttttattctcttcCCGTAAGTCCTAATTTCTG
ATTTTGAAAATGTCGTGTATTCCTTATCACTTGGAATAACTATTTGCTTC
TTTTCAGTACCCCTCTTTAGAGAAAAGCCGACGGGAAAAGATTtccaata
aattttattttattgaataaacGTCTTTTCTCTAGAAGGGACGTGAATCT
TATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGACTGG
CAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGTATGA
AGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTGACCT
Ttttataccctggaccaagtttctcaatcccggccaagcaaaatctttga
tcagagttttttgaaaagtggtaccctaatggcggcactgaTCAATGTgt
aatgcatcgagagcgctagatctactttccctcgaaaacttttgatgatg
tagcggcgttaaggccggcgcaaatgaatccaacattcaatccaacattt
ccaattcattgttggacgaaatgttggacgaaaagtcacgtggaaaaatt
tgaaaagttgcatgaaaagtcatttgcgcaaAAACNGGAACTATGTTTTT
GCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGCTCCA
CCTCAAGAAGGTTCCAAAGAGTTCACAGTGCTGTCTTGGAACATTGATGG
TTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACA
TCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAA
ACATTCCTctctctttttattctcttcCCGTAAGTCCTAatttctgattt
tgaaaaatgtcgtGTATTCCTTATCACTTGGAATAACTACTTGCTTCTTT
TCAGTATCCCCGACGGGAAAAGATTTCCaataaattttattattattaaa
aaaaaaaacttttttattgaaTAAACGTCTTTTCTCTAGAAGGGACGTGA
ATCTTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGA
CTGGCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGT
ATGAAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTG
ACCTTtttataccctggaccaagtttctcaattccggccaagcaaaatct
ttgatcagagttttttgaaaagtggtaccctaatggcggcactgaTCAAT
GTgtaatgcatcgagagcgctagatctactttccctcgaaaacttttgat
gatgtagcggcgttaaggccggcgcaaatgaatccaacatttccaattca
ttgttggacgaaatgttggacgaaaagtcacgtggaaaaatttgaaaagt
tgcatgaaaagtcatttgcgcaaaaatgtcaaacattttcatccaacacg
ATTACGCAAATTCATACAACATTGAAACCaacataaaagtgacgtcaatc
tcattaaaaaatgttggatgaaaagttTGACGGCGATCAAtcttcatcca
acatgatttccaacaattttcttaaaaagttgcaattttaagACTTGCGC
AAACGaacccaacatttgatccaacaataatgtgggatcaaatgttggat
tcatttgcaGAGGTTATTggaacactgcaatggcttctttacgggcacca
attcaaaaaaaaaaccttagatcaaagatggcggatatatcTTGggccag
ggatatataaaggtcagtgggttcACTACATAAAAGCACAATCATCAACT
GAGTGAATATAAGTGAACTAAAATTTTGATTCACAAGTTCTGTCAGTtgc
cttttcaacattttgatactgggaaaattgaaaacaatagGTTTCAAAAT
CACCTTAAAATAATGGGATAAGTAAGAAAAAGGAATATAAAACGCCTTTA
TACACCTCCAAGTTTACGGACGGTTCATTTTAGTCTTTACGTGATTCGAA
CATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCG
CACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCA
AATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCTG
TTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAG
agacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCCGAG
CGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAGATT
TGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACG
GCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGA
TAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAA
TGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGAA
TTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattt
tggaattttaagcAAATTCATTCTTCCAGATGACTGACGAGGAATTATAT
ggtgaaaaaatctttttcatcatACGTTTAATTCCCTATGATATTATTTT
TGGAcatacctcggaggtcctataaattaactgatgtccgtccgttcatc
cgtccgtccgtccgtctgttatcagcttttctcaggattggctcattagt
tgtttctaattttttgctcaaagatgcgtattcgcaatgcttaaaacatg
accgagttcgatttttgagaaaaaaaattttccagacaaaaatgccggaa
atttccgtttttgcagatttttattacaaagattatttataagaatgtcc
acgattaagcatggttcaatttttaatgaaactgattttggtacaggaac
tttctaaaaatcgctagaacagccgagaatcgccggatttcttgaattat
tattattaatattattctgcattttcatactattgttgtcatttttcaat
tgtcttattacatatcttcaggtaggtccattcagcatgtagcttgttta
tATTATGTTTTACGTTTTCGAGATTGTAAATATCGTGTTCAtagattata
tttttttatcaatcgTTTATTTAAAGAATTATATTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072849-exon-scaffold_86-1491911889:293407..293458 | TCONS_00072849-exon-scaffold_86-1491911889:293407..293458 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:293407..293458 | TCONS_00072849-exon-scaffold_86-1510915933:293407..293458 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:293407..293458 | TCONS_00072849-exon-scaffold_86-1575043694:293407..293458 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1491911889:293817..293947 | TCONS_00072849-exon-scaffold_86-1491911889:293817..293947 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:293817..293947 | TCONS_00072849-exon-scaffold_86-1510915933:293817..293947 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:293817..293947 | TCONS_00072849-exon-scaffold_86-1575043694:293817..293947 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1491911889:294136..294481 | TCONS_00072849-exon-scaffold_86-1491911889:294136..294481 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:294136..294481 | TCONS_00072849-exon-scaffold_86-1510915933:294136..294481 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:294136..294481 | TCONS_00072849-exon-scaffold_86-1575043694:294136..294481 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1491911889:295145..295182 | TCONS_00072849-exon-scaffold_86-1491911889:295145..295182 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:295145..295182 | TCONS_00072849-exon-scaffold_86-1510915933:295145..295182 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:295145..295182 | TCONS_00072849-exon-scaffold_86-1575043694:295145..295182 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1491911889:295454..295639 | TCONS_00072849-exon-scaffold_86-1491911889:295454..295639 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:295454..295639 | TCONS_00072849-exon-scaffold_86-1510915933:295454..295639 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:295454..295639 | TCONS_00072849-exon-scaffold_86-1575043694:295454..295639 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1491911889:297640..298845 | TCONS_00072849-exon-scaffold_86-1491911889:297640..298845 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1510915933:297640..298845 | TCONS_00072849-exon-scaffold_86-1510915933:297640..298845 | Clytia hemisphaerica | exon |
| TCONS_00072849-exon-scaffold_86-1575043694:297640..298845 | TCONS_00072849-exon-scaffold_86-1575043694:297640..298845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:293407..298845 + |
Blast
BLAST of TCONS_00072849 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 6.409e-46 Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 2
Query: 578 QEGSKEFTVLSWNIDGLEEEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 1339
QE F++++WNIDGL+ L ER +G + P ++ LQEV+ + L Y I T +GYF IM LKK VK+ + + F S++M R+ L + + G + +MTSHLES + AAER QLK + + ++P IFAGD N+R ++ + GG+P I D WE G+ + ++TWD ++N N G + RFDR++F RA + I +L+GLE+L CG FPSDH+G+L
Sbjct: 108 QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358
The following BLAST results are available for this feature:
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