TCONS_00072849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072849
Unique NameTCONS_00072849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072849 ID=TCONS_00072849|Name=TCONS_00072849|organism=Clytia hemisphaerica|type=transcript|length=1959bp
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTGCTTCATAT
CATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGATATGGAAGT
CCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGA
GTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTA
CCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCT
ATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGA
AAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAAT
GACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCA
AACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacg
atgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATCT
AAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCAAAAGAGTTCAC
AGTGCTGTCATGGAACATTGATGGTTTGGAAGAAGAATATTTGATGGAAA
GATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATTGTG
ATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattctctt
cCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATGTAA
TCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGGT
TGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAACT
ATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAAGTT
TAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgttttgaa
acaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGACTT
GAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAAA
TTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTACT
TGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAAACC
ACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATCCAA
TGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGGG
ATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCCAGA
TGACTGACGAGGAATTATATggtgaaaaaatctttttcatcatACGTTTA
ATTCCCTATGATATTATTTTTGGAcatacctcggaggtcctataaattaa
ctgatgtccgtccgttcatccgtccgtccgtccgtctgttatcagctttt
ctcaggattggctcattagttgtttctaattttttgctcaaagatgcgta
ttcgcaatgcttaaaacatgaccgagttcgatttttgagaaaaaaaattt
tccagacaaaaatgccggaaatttccgtttttgcagatttttattacaaa
gattatttataagaatgtccacgattaagcatggttcaatttttaatgaa
actgattttggtacaggaactttctaaaaatcgctagaacagccgagaat
cgccggatttcttgaattattattattaatattattctgcattttcatac
tattgttgtcatttttcaattgtcttattacatatcttcaggtaggtcca
ttcagcatgtagcttgtttatATTATGTTTTACGTTTTCGAGATTGTAAA
TATCGTGTTCAtagattatatttttttatcaatcgTTTATTTAAAGAATT
ATATTATAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:293407..298845+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072849 ID=TCONS_00072849|Name=TCONS_00072849|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at scaffold_86:293407..298845+ (Clytia hemisphaerica)
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC AGGTAAGACGTAAAGGGAAACTAAAACTTTGATAAAAACTTACCCATAAT GTTTTTAGTAAGCTCAACTAGGAAGAAATTTTAAGCAATTGGACAATACC AACCGAGAAAACACCCTTTTCAccgatttaaaatttttctttttgttaaa gTCCATTTTACAACATAAGTAACCCTATAAATGAGCCAGTTGGTCATTCT TCTATTATCAGTTTTTCttgtgattggctcattagctttttatgatattt tgcatGACGATGctgatgatttgattttgttagGATTACTCAAATGGGAT TAGTCGACGTAGTTCACAAATGTTGATTTTGTTTGATCTTCACTGACCAT TATTTTACAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTG CTTCATATCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGAT ATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGTTTTTTAG TACCTTGTTGACAAATTTCTCTTCGCGAACCAATGTTTTGTAAATCAATT TAACCAGATTAGTTGTTCAGCTCAGTAGAGTAtcaagtaataagattctt ggCTTTTACACATGTTTTATCCAAGTTTGGTTTTTTTGAAATAcactatt ttttttctcttgtcGTTCAATTTTGTTAGGGAAGTCGTTGTACTGAGTGA TGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGA AGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATTG AATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAGC AAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGACA AAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACA AATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatga tgatttAGCGTTTTACGGAATCTCAGTAAGCTCTAAGgacaattcaaatt ttacttAAAGATAAACAATTGATATGCTATATTGCTTTAATTGATCTTGG TCAATCAACGTGGTATTCTATCTAGTTGTCGATACAATAACACTAAGAGA GCCCTGTTGTAccatataaataaaaaattgattggAGTACCGCAAATTTT TTCCGTCAGTAGATgcagacctgatttagcggccgaagacctgattaGAA AGTTACCGGCCTAATCTGAAGTTAGGGTAGTATGAATATATTGCACCTCT CGGAATAGCATCAGTTGCGATGGCCCAGTGGTTACCACAGTGGTCTTGTA GACGGGAGATGAGTAGTTCAATATGAGGTATTCGCAttaatttcattctt tttagtttaaaatcttttaacttgttttttttttcaaaacatttccattg aaacatcatataaAAATCTTGCTTGAATTCATATAAAGGATATAAAACAA ATTTCTACTCAATTTATTTTCTGCAAGTCTTCGGCCTAGATACGAACGCT AAATCAGGTCTGTGACCGTTAGTTTAGGTTTGCGTTCGCTGATTGAAAAG GAATCTGTGGAGGTTCGTGCATATAAAAGTACCCCACATCTGTTATATAA CTGTATCATTTTAATTCGTTAATGATTTTATTATTCAGGCTCAGGAAGAT GTTTCATCTAAAGCTTCTCCGTCAGTGTAAGCATCATATTTTGTTAAAGC AGAATGCAGTACCCTTTTTACAAAGACTTTTGTCCTGTGTTTCacaaaaa ttagtgaaaatgggggggggggttataaATGAATTAAATTCAACAAAtca agtctttttttttgctccATTCGCAAAAGTGAATActcgcgaaattcaaa aatttcggcAAAAGCTTTTTTACGCAAAAGATTTTCCCCTAGAACTATGT TTTTGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGC TCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTG ATGGTTTGGAAGAAGAATATTTGATGGAAAGATTCCAAGGAGCTCTGAAA GACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCA ACAAACATTCCTctctctttttattctcttcCCGTAAGTCCTAATTTCTG ATTTTGAAAATGTCGTGTATTCCTTATCACTTGGAATAACTATTTGCTTC TTTTCAGTACCCCTCTTTAGAGAAAAGCCGACGGGAAAAGATTtccaata aattttattttattgaataaacGTCTTTTCTCTAGAAGGGACGTGAATCT TATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGACTGG CAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGTATGA AGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTGACCT Ttttataccctggaccaagtttctcaatcccggccaagcaaaatctttga tcagagttttttgaaaagtggtaccctaatggcggcactgaTCAATGTgt aatgcatcgagagcgctagatctactttccctcgaaaacttttgatgatg tagcggcgttaaggccggcgcaaatgaatccaacattcaatccaacattt ccaattcattgttggacgaaatgttggacgaaaagtcacgtggaaaaatt tgaaaagttgcatgaaaagtcatttgcgcaaAAACNGGAACTATGTTTTT GCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGCTCCA CCTCAAGAAGGTTCCAAAGAGTTCACAGTGCTGTCTTGGAACATTGATGG TTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACA TCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAA ACATTCCTctctctttttattctcttcCCGTAAGTCCTAatttctgattt tgaaaaatgtcgtGTATTCCTTATCACTTGGAATAACTACTTGCTTCTTT TCAGTATCCCCGACGGGAAAAGATTTCCaataaattttattattattaaa aaaaaaaacttttttattgaaTAAACGTCTTTTCTCTAGAAGGGACGTGA ATCTTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGA CTGGCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGT ATGAAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTG ACCTTtttataccctggaccaagtttctcaattccggccaagcaaaatct ttgatcagagttttttgaaaagtggtaccctaatggcggcactgaTCAAT GTgtaatgcatcgagagcgctagatctactttccctcgaaaacttttgat gatgtagcggcgttaaggccggcgcaaatgaatccaacatttccaattca ttgttggacgaaatgttggacgaaaagtcacgtggaaaaatttgaaaagt tgcatgaaaagtcatttgcgcaaaaatgtcaaacattttcatccaacacg ATTACGCAAATTCATACAACATTGAAACCaacataaaagtgacgtcaatc tcattaaaaaatgttggatgaaaagttTGACGGCGATCAAtcttcatcca acatgatttccaacaattttcttaaaaagttgcaattttaagACTTGCGC AAACGaacccaacatttgatccaacaataatgtgggatcaaatgttggat tcatttgcaGAGGTTATTggaacactgcaatggcttctttacgggcacca attcaaaaaaaaaaccttagatcaaagatggcggatatatcTTGggccag ggatatataaaggtcagtgggttcACTACATAAAAGCACAATCATCAACT GAGTGAATATAAGTGAACTAAAATTTTGATTCACAAGTTCTGTCAGTtgc cttttcaacattttgatactgggaaaattgaaaacaatagGTTTCAAAAT CACCTTAAAATAATGGGATAAGTAAGAAAAAGGAATATAAAACGCCTTTA TACACCTCCAAGTTTACGGACGGTTCATTTTAGTCTTTACGTGATTCGAA CATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCG CACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCA AATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCTG TTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAG agacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCCGAG CGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAGATT TGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACG GCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGA TAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAA TGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGAA TTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattt tggaattttaagcAAATTCATTCTTCCAGATGACTGACGAGGAATTATAT ggtgaaaaaatctttttcatcatACGTTTAATTCCCTATGATATTATTTT TGGAcatacctcggaggtcctataaattaactgatgtccgtccgttcatc cgtccgtccgtccgtctgttatcagcttttctcaggattggctcattagt tgtttctaattttttgctcaaagatgcgtattcgcaatgcttaaaacatg accgagttcgatttttgagaaaaaaaattttccagacaaaaatgccggaa atttccgtttttgcagatttttattacaaagattatttataagaatgtcc acgattaagcatggttcaatttttaatgaaactgattttggtacaggaac tttctaaaaatcgctagaacagccgagaatcgccggatttcttgaattat tattattaatattattctgcattttcatactattgttgtcatttttcaat tgtcttattacatatcttcaggtaggtccattcagcatgtagcttgttta tATTATGTTTTACGTTTTCGAGATTGTAAATATCGTGTTCAtagattata tttttttatcaatcgTTTATTTAAAGAATTATATTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045215XLOC_045215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072849-exon-scaffold_86-1491911889:293407..293458TCONS_00072849-exon-scaffold_86-1491911889:293407..293458Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:293407..293458TCONS_00072849-exon-scaffold_86-1510915933:293407..293458Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:293407..293458TCONS_00072849-exon-scaffold_86-1575043694:293407..293458Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1491911889:293817..293947TCONS_00072849-exon-scaffold_86-1491911889:293817..293947Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:293817..293947TCONS_00072849-exon-scaffold_86-1510915933:293817..293947Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:293817..293947TCONS_00072849-exon-scaffold_86-1575043694:293817..293947Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1491911889:294136..294481TCONS_00072849-exon-scaffold_86-1491911889:294136..294481Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:294136..294481TCONS_00072849-exon-scaffold_86-1510915933:294136..294481Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:294136..294481TCONS_00072849-exon-scaffold_86-1575043694:294136..294481Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1491911889:295145..295182TCONS_00072849-exon-scaffold_86-1491911889:295145..295182Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:295145..295182TCONS_00072849-exon-scaffold_86-1510915933:295145..295182Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:295145..295182TCONS_00072849-exon-scaffold_86-1575043694:295145..295182Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1491911889:295454..295639TCONS_00072849-exon-scaffold_86-1491911889:295454..295639Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:295454..295639TCONS_00072849-exon-scaffold_86-1510915933:295454..295639Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:295454..295639TCONS_00072849-exon-scaffold_86-1575043694:295454..295639Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1491911889:297640..298845TCONS_00072849-exon-scaffold_86-1491911889:297640..298845Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1510915933:297640..298845TCONS_00072849-exon-scaffold_86-1510915933:297640..298845Clytia hemisphaericaexon
TCONS_00072849-exon-scaffold_86-1575043694:297640..298845TCONS_00072849-exon-scaffold_86-1575043694:297640..298845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:293407..298845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.853836 1.05578 0.252929 1.1358 0 0 0 0 0.211679 2.35599e-09 0.22384 0 0.205734 0.484305 0 0.808889 0.550445 1.10196 0 0 0.378778 6.81192e-05 1.65144 0.716928 1.75521 1.21364 0.328949 1.03123 1.35055 1.7253
Blast
BLAST of TCONS_00072849 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.409e-46
Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 2
Query:  578 QEGSKEFTVLSWNIDGLEEEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 1339
            QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+   +  L      Y I T   +GYF  IM LKK  VK+  + +   F S++M R+ L   + + G  + +MTSHLES +  AAER  QLK   + + ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:  108 QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358          
The following BLAST results are available for this feature:
BLAST of TCONS_00072849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP26.409e-4637.50Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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