TCONS_00072848 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072848
Unique Name	TCONS_00072848
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1959

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_86:293407..298845+
coding sequence from alignment at scaffold_86:293407..298845+

transcript sequence

>TCONS_00072848 ID=TCONS_00072848|Name=TCONS_00072848|organism=Clytia hemisphaerica|type=transcript|length=1959bp
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTGCTTCATAT
CATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGATATGGAAGT
CCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGA
GTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTA
CCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCT
ATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGA
AAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAAT
GACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCA
AACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacg
atgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATCT
AAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCAAAAGAGTTCAC
AGTGCTGTCATGGAACATTGATGGTTTGGAAGACGAATATTTGATGGAGA
GATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATTGTG
ATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattctctt
cCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATGTAA
TCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGGT
TGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAACT
ATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAAGTT
TAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgttttgaa
acaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGACTT
GAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAAA
TTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTACT
TGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAAACC
ACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATCCAA
TGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGGG
ATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCCAGA
TGACTGACGAGGAATTATATggtgaaaaaatctttttcatcatACGTTTA
ATTCCCTATGATATTATTTTTGGAcatacctcggaggtcctataaattaa
ctgatgtccgtccgttcatccgtccgtccgtccgtctgttatcagctttt
ctcaggattggctcattagttgtttctaattttttgctcaaagatgcgta
ttcgcaatgcttaaaacatgaccgagttcgatttttgagaaaaaaaattt
tccagacaaaaatgccggaaatttccgtttttgcagatttttattacaaa
gattatttataagaatgtccacgattaagcatggttcaatttttaatgaa
actgattttggtacaggaactttctaaaaatcgctagaacagccgagaat
cgccggatttcttgaattattattattaatattattctgcattttcatac
tattgttgtcatttttcaattgtcttattacatatcttcaggtaggtcca
ttcagcatgtagcttgtttatATTATGTTTTACGTTTTCGAGATTGTAAA
TATCGTGTTCAtagattatatttttttatcaatcgTTTATTTAAAGAATT
ATATTATAC

Run BLAST on NCBI

protein sequence of TCONS_00072848-protein

>TCONS_00072848-protein ID=TCONS_00072848-protein|Name=TCONS_00072848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MEVPTSSTAKRKQREVVVLSDDDNDKEDGAVANLLVPKKTETENCDGDDL
THLLNDKDNDIIVNQPVPKKAKTNDIGGDDLTYLLNDKDDDIIANQPVPK
KAQTNDSGKDDLTHLLNDDDDDLAFYGISAQEDVSSKASPSVAPPQEGSK
EFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLF
ILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLL
QKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFA
GDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGN
RKPRARFDRMYFKRAQSNPMQCIGFELIGLERLSCGMFPSDHFGILSKFI
LPDD

Run BLAST on NCBI

transcript from alignment at scaffold_86:293407..298845+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072848 ID=TCONS_00072848|Name=TCONS_00072848|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at scaffold_86:293407..298845+ (Clytia hemisphaerica)
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGTAAGACGTAAAGGGAAACTAAAACTTTGATAAAAACTTACCCATAAT
GTTTTTAGTAAGCTCAACTAGGAAGAAATTTTAAGCAATTGGACAATACC
AACCGAGAAAACACCCTTTTCAccgatttaaaatttttctttttgttaaa
gTCCATTTTACAACATAAGTAACCCTATAAATGAGCCAGTTGGTCATTCT
TCTATTATCAGTTTTTCttgtgattggctcattagctttttatgatattt
tgcatGACGATGctgatgatttgattttgttagGATTACTCAAATGGGAT
TAGTCGACGTAGTTCACAAATGTTGATTTTGTTTGATCTTCACTGACCAT
TATTTTACAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTG
CTTCATATCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGAT
ATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGTTTTTTAG
TACCTTGTTGACAAATTTCTCTTCGCGAACCAATGTTTTGTAAATCAATT
TAACCAGATTAGTTGTTCAGCTCAGTAGAGTAtcaagtaataagattctt
ggCTTTTACACATGTTTTATCCAAGTTTGGTTTTTTTGAAATAcactatt
ttttttctcttgtcGTTCAATTTTGTTAGGGAAGTCGTTGTACTGAGTGA
TGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGA
AGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATTG
AATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAGC
AAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGACA
AAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACA
AATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatga
tgatttAGCGTTTTACGGAATCTCAGTAAGCTCTAAGgacaattcaaatt
ttacttAAAGATAAACAATTGATATGCTATATTGCTTTAATTGATCTTGG
TCAATCAACGTGGTATTCTATCTAGTTGTCGATACAATAACACTAAGAGA
GCCCTGTTGTAccatataaataaaaaattgattggAGTACCGCAAATTTT
TTCCGTCAGTAGATgcagacctgatttagcggccgaagacctgattaGAA
AGTTACCGGCCTAATCTGAAGTTAGGGTAGTATGAATATATTGCACCTCT
CGGAATAGCATCAGTTGCGATGGCCCAGTGGTTACCACAGTGGTCTTGTA
GACGGGAGATGAGTAGTTCAATATGAGGTATTCGCAttaatttcattctt
tttagtttaaaatcttttaacttgttttttttttcaaaacatttccattg
aaacatcatataaAAATCTTGCTTGAATTCATATAAAGGATATAAAACAA
ATTTCTACTCAATTTATTTTCTGCAAGTCTTCGGCCTAGATACGAACGCT
AAATCAGGTCTGTGACCGTTAGTTTAGGTTTGCGTTCGCTGATTGAAAAG
GAATCTGTGGAGGTTCGTGCATATAAAAGTACCCCACATCTGTTATATAA
CTGTATCATTTTAATTCGTTAATGATTTTATTATTCAGGCTCAGGAAGAT
GTTTCATCTAAAGCTTCTCCGTCAGTGTAAGCATCATATTTTGTTAAAGC
AGAATGCAGTACCCTTTTTACAAAGACTTTTGTCCTGTGTTTCacaaaaa
ttagtgaaaatgggggggggggttataaATGAATTAAATTCAACAAAtca
agtctttttttttgctccATTCGCAAAAGTGAATActcgcgaaattcaaa
aatttcggcAAAAGCTTTTTTACGCAAAAGATTTTCCCCTAGAACTATGT
TTTTGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGC
TCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTG
ATGGTTTGGAAGAAGAATATTTGATGGAAAGATTCCAAGGAGCTCTGAAA
GACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCA
ACAAACATTCCTctctctttttattctcttcCCGTAAGTCCTAATTTCTG
ATTTTGAAAATGTCGTGTATTCCTTATCACTTGGAATAACTATTTGCTTC
TTTTCAGTACCCCTCTTTAGAGAAAAGCCGACGGGAAAAGATTtccaata
aattttattttattgaataaacGTCTTTTCTCTAGAAGGGACGTGAATCT
TATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGACTGG
CAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGTATGA
AGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTGACCT
Ttttataccctggaccaagtttctcaatcccggccaagcaaaatctttga
tcagagttttttgaaaagtggtaccctaatggcggcactgaTCAATGTgt
aatgcatcgagagcgctagatctactttccctcgaaaacttttgatgatg
tagcggcgttaaggccggcgcaaatgaatccaacattcaatccaacattt
ccaattcattgttggacgaaatgttggacgaaaagtcacgtggaaaaatt
tgaaaagttgcatgaaaagtcatttgcgcaaAAACNGGAACTATGTTTTT
GCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGCTCCA
CCTCAAGAAGGTTCCAAAGAGTTCACAGTGCTGTCTTGGAACATTGATGG
TTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACA
TCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAA
ACATTCCTctctctttttattctcttcCCGTAAGTCCTAatttctgattt
tgaaaaatgtcgtGTATTCCTTATCACTTGGAATAACTACTTGCTTCTTT
TCAGTATCCCCGACGGGAAAAGATTTCCaataaattttattattattaaa
aaaaaaaacttttttattgaaTAAACGTCTTTTCTCTAGAAGGGACGTGA
ATCTTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGA
CTGGCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGT
ATGAAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTG
ACCTTtttataccctggaccaagtttctcaattccggccaagcaaaatct
ttgatcagagttttttgaaaagtggtaccctaatggcggcactgaTCAAT
GTgtaatgcatcgagagcgctagatctactttccctcgaaaacttttgat
gatgtagcggcgttaaggccggcgcaaatgaatccaacatttccaattca
ttgttggacgaaatgttggacgaaaagtcacgtggaaaaatttgaaaagt
tgcatgaaaagtcatttgcgcaaaaatgtcaaacattttcatccaacacg
ATTACGCAAATTCATACAACATTGAAACCaacataaaagtgacgtcaatc
tcattaaaaaatgttggatgaaaagttTGACGGCGATCAAtcttcatcca
acatgatttccaacaattttcttaaaaagttgcaattttaagACTTGCGC
AAACGaacccaacatttgatccaacaataatgtgggatcaaatgttggat
tcatttgcaGAGGTTATTggaacactgcaatggcttctttacgggcacca
attcaaaaaaaaaaccttagatcaaagatggcggatatatcTTGggccag
ggatatataaaggtcagtgggttcACTACATAAAAGCACAATCATCAACT
GAGTGAATATAAGTGAACTAAAATTTTGATTCACAAGTTCTGTCAGTtgc
cttttcaacattttgatactgggaaaattgaaaacaatagGTTTCAAAAT
CACCTTAAAATAATGGGATAAGTAAGAAAAAGGAATATAAAACGCCTTTA
TACACCTCCAAGTTTACGGACGGTTCATTTTAGTCTTTACGTGATTCGAA
CATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCG
CACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCA
AATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCTG
TTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAG
agacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCCGAG
CGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAGATT
TGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACG
GCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGA
TAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAA
TGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGAA
TTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattt
tggaattttaagcAAATTCATTCTTCCAGATGACTGACGAGGAATTATAT
ggtgaaaaaatctttttcatcatACGTTTAATTCCCTATGATATTATTTT
TGGAcatacctcggaggtcctataaattaactgatgtccgtccgttcatc
cgtccgtccgtccgtctgttatcagcttttctcaggattggctcattagt
tgtttctaattttttgctcaaagatgcgtattcgcaatgcttaaaacatg
accgagttcgatttttgagaaaaaaaattttccagacaaaaatgccggaa
atttccgtttttgcagatttttattacaaagattatttataagaatgtcc
acgattaagcatggttcaatttttaatgaaactgattttggtacaggaac
tttctaaaaatcgctagaacagccgagaatcgccggatttcttgaattat
tattattaatattattctgcattttcatactattgttgtcatttttcaat
tgtcttattacatatcttcaggtaggtccattcagcatgtagcttgttta
tATTATGTTTTACGTTTTCGAGATTGTAAATATCGTGTTCAtagattata
tttttttatcaatcgTTTATTTAAAGAATTATATTATAC

Coding sequence (CDS) from alignment at scaffold_86:293407..298845+

>TCONS_00072848 ID=TCONS_00072848|Name=TCONS_00072848|organism=Clytia hemisphaerica|type=CDS|length=7290bp|location=Sequence derived from alignment at scaffold_86:293407..298845+ (Clytia hemisphaerica)
ATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGT
TGTACTGAGTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATC
TGCTGGTACCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTT
ACTCATCTATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGT
ACCGAAGAAAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATT
TATTGAATGACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAG
AAAGCCCAAACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaa
tgatgacgatgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATG
TTTCATCTAAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCAAAA
GAGTTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAGACGAATATTT
GATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGA
CCATTGTGATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctcttttt
attctcttcCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTT
CAATGTAATCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGT
TGGACGGTTGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTA
CAAAAACTATACATTCATGGAAAACCTGTTACagtgatgacgtcacactt
GGAAAGTTTAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaat
gttttgaaacaataaCAGACTCGCCGAGCGACAcaaacttcatttttgct
ggTGACTTGAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCC
GCCCAAAATTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAA
AGTTTACTTGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAAT
CGTAAACCACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATC
GAATCCAATGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGT
CTTGTGGGATGTTCCCAAGTgatcattttggaattttaagcAAATTCATT
CTTCCAGATGACTGAATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAA
GCAAAGGGAAGTCGTTGTACTGAGTGATGACGACAATGATAAAGAAGATG
GCGCCGTCGCTAATCTGCTGGTACCGAAGAAAACCGAAACAGAGAATTGC
GATGGAGACGATCTTACTCATCTATTGAATGACAAAGATAATGACATCAT
CGTCAACCAACCGGTACCGAAGAAAGCAAAAACAAATGACATTGGTGGAG
ATGACCTCACTTATTTATTGAATGACAAAGATGACGACATCATCGCCAAC
CAACCGGTACCGAAGAAAGCCCAAACAAATGATAGTGGGAAAGATGACCT
CACTCATTTACTgaatgatgacgatgatgatttAGCGTTTTACGGAATCT
CAGCTCAGGAAGATGTTTCATCTAAAGCTTCTCCGTCAGTAGCTCCACCT
CAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTGATGGTTT
GGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCT
TGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAAACA
TTCCTctctctttttattctcttcCCTCTTTACGTGATTCGAACATTGGA
GCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCGCACGTGA
AAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCAAATGGAT
CGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCTGTTACagt
gatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAGagacaaa
aacaattgaaacaatgttttgaaacaataaCAGACTCGCCGAGCGACAca
aacttcatttttgctggTGACTTGAATATGAGGGCGGAAGATTTGAGACA
GGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACGGCTGGAG
AAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGATAATAAA
AAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAATGTATTT
CAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGAATTGATCG
GTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattttggaatt
ttaagcAAATTCATTCTTCCAGATGACTGAATGGAAGTCCCAACCTCGTC
TACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGAGTGATGACGACA
ATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGAAGAAAACC
GAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATTGAATGACAA
AGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAGCAAAAACAA
ATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGACAAAGATGAC
GACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACAAATGATAG
TGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatgatgatttAG
CGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATCTAAAGCTTCTCCG
TCAGTAGCTCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATG
GAACATTGATGGTTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAG
CTCTGAAAGACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAA
GTTGTTCAACAAACATTCCTctctctttttattctcttcCCTCTTTACGT
GATTCGAACATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAA
AGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTAC
TCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGG
AAAACCTGTTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTG
CTGCAGAGagacaaaaacaattgaaacaatgttttgaaacaataaCAGAC
TCGCCGAGCGACAcaaacttcatttttgctggTGACTTGAATATGAGGGC
GGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCT
GGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAA
CTGAATGATAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTT
CGATCGAATGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTG
GATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGT
gatcattttggaattttaagcAAATTCATTCTTCCAGATGACTGAATGGA
AGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTAC
TGAGTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTG
GTACCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCA
TCTATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGA
AGAAAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTG
AATGACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGC
CCAAACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatg
acgatgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCA
TCTAAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCAAAAGAGTT
CACAGTGCTGTCATGGAACATTGATGGTTTGGAAGACGAATATTTGATGG
AGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATT
GTGATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattct
cttcCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATG
TAATCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGAC
GGTTGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAA
ACTATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAA
GTTTAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgtttt
gaaacaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGA
CTTGAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCA
AAATTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTT
ACTTGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAA
ACCACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATC
CAATGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGT
GGGATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCC
AGATGACTGAATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAA
GGGAAGTCGTTGTACTGAGTGATGACGACAATGATAAAGAAGATGGCGCC
GTCGCTAATCTGCTGGTACCGAAGAAAACCGAAACAGAGAATTGCGATGG
AGACGATCTTACTCATCTATTGAATGACAAAGATAATGACATCATCGTCA
ACCAACCGGTACCGAAGAAAGCAAAAACAAATGACATTGGTGGAGATGAC
CTCACTTATTTATTGAATGACAAAGATGACGACATCATCGCCAACCAACC
GGTACCGAAGAAAGCCCAAACAAATGATAGTGGGAAAGATGACCTCACTC
ATTTACTgaatgatgacgatgatgatttAGCGTTTTACGGAATCTCAGCT
CAGGAAGATGTTTCATCTAAAGCTTCTCCGTCAGTAGCTCCACCTCAAGA
AGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAG
ACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAA
AAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAAACATTCCT
ctctctttttattctcttcCCTCTTTACGTGATTCGAACATTGGAGCACG
ATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCGCACGTGAAAGTC
ATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCAAATGGATCGTCA
CTGTTTGTTACAAAAACTATACATTCATGGAAAACCTGTTACagtgatga
cgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAGagacaaaaacaa
ttgaaacaatgttttgaaacaataaCAGACTCGCCGAGCGACAcaaactt
catttttgctggTGACTTGAATATGAGGGCGGAAGATTTGAGACAGGTTG
GTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACGGCTGGAGAAGAT
CCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGATAATAAAAAATT
CGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAATGTATTTCAAAA
GAGCACAATCGAATCCAATGCAATGTATTGGATTTGAATTGATCGGTTTG
GAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattttggaattttaag
cAAATTCATTCTTCCAGATGACTGAATGGAAGTCCCAACCTCGTCTACTG
CAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGAGTGATGACGACAATGAT
AAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGAAGAAAACCGAAAC
AGAGAATTGCGATGGAGACGATCTTACTCATCTATTGAATGACAAAGATA
ATGACATCATCGTCAACCAACCGGTACCGAAGAAAGCAAAAACAAATGAC
ATTGGTGGAGATGACCTCACTTATTTATTGAATGACAAAGATGACGACAT
CATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACAAATGATAGTGGGA
AAGATGACCTCACTCATTTACTgaatgatgacgatgatgatttAGCGTTT
TACGGAATCTCAGCTCAGGAAGATGTTTCATCTAAAGCTTCTCCGTCAGT
AGCTCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACA
TTGATGGTTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTG
AAAGACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGT
TCAACAAACATTCCTctctctttttattctcttcCCTCTTTACGTGATTC
GAACATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAA
CCGCACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTC
CCAAATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAAC
CTGTTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCA
GAGagacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCC
GAGCGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAG
ATTTGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAA
ACGGCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAA
TGATAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATC
GAATGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTT
GAATTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatca
ttttggaattttaagcAAATTCATTCTTCCAGATGACTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045215	XLOC_045215	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00072848-protein	TCONS_00072848-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_86	supercontig	scaffold_86:293407..298845 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39471	1.63924	1.19719	0.309694	3.14162	2.80575	2.40397	2.93805	1.45031	0.804357	1.55988	1.38353	1.31811	0.597285	3.08354	2.71308	2.73388	3.12704	2.19902	1.66166	2.23779	1.86306	2.56299	3.03148	0	0	0.77428	0.100589	1.5361	1.6163

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

Blast

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BLAST of TCONS_00072848 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.915e-46
Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 2

Query:  578 QEGSKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 1339
            QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+   +  L      Y I T   +GYF  IM LKK  VK+  + +   F S++M R+ L   + + G  + +MTSHLES +  AAER  QLK   + + ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:  108 QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358

The following BLAST results are available for this feature:

BLAST of TCONS_00072848 vs. Swiss-Prot (Human)

BLAST of TCONS_00072848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TYDP2	7.915e-46	37.50	Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN...	[more]

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TCONS_00072848 (transcript) - C. hemisphaerica