TCONS_00072848-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072848-protein
Unique Name	TCONS_00072848-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	404

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072848-protein ID=TCONS_00072848-protein|Name=TCONS_00072848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MEVPTSSTAKRKQREVVVLSDDDNDKEDGAVANLLVPKKTETENCDGDDL
THLLNDKDNDIIVNQPVPKKAKTNDIGGDDLTYLLNDKDDDIIANQPVPK
KAQTNDSGKDDLTHLLNDDDDDLAFYGISAQEDVSSKASPSVAPPQEGSK
EFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLF
ILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLL
QKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFA
GDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGN
RKPRARFDRMYFKRAQSNPMQCIGFELIGLERLSCGMFPSDHFGILSKFI
LPDD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045215	XLOC_045215	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072848	TCONS_00072848	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	3.60.10.10		coord: 143..400 e-value: 4.0E-30 score: 104.5
IPR005135	Endonuclease/exonuclease/phosphatase	SUPERFAMILY	56219	DNase I-like	coord: 141..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	CDD	cd09080	TDP2	coord: 152..399 e-value: 4.93296E-70 score: 222.219

Blast

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BLAST of TCONS_00072848-protein vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.330e-51
Identity = 101/270 (37.41%), Postives = 150/270 (55.56%), Query Frame = 0

Query:  132 EDVSSKASPSVAPPQEGSKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 399
            +  +SK SPS    QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+   +  L      Y I T   +GYF  IM LKK  VK+  + +   F S++M R+ L   + + G  + +MTSHLES +  AAER  QLK   + + ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:   94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358

The following BLAST results are available for this feature:

BLAST of TCONS_00072848-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072848-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TYDP2	6.330e-51	37.41	Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN...	[more]

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TCONS_00072848-protein (polypeptide) - C. hemisphaerica