TCONS_00072847 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072847
Unique Name	TCONS_00072847
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1960

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_86:293406..298845+

transcript sequence

>TCONS_00072847 ID=TCONS_00072847|Name=TCONS_00072847|organism=Clytia hemisphaerica|type=transcript|length=1960bp
ttagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACG
CAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTGCTTCATA
TCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGATATGGAAG
TCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTG
AGTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGT
ACCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATC
TATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAG
AAAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAA
TGACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCC
AAACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgac
gatgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATC
TAAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCCAAAGAGTTCA
CAGTGCTGTCTTGGAACATTGATGGTTTGGAAGACGAATATTTGATGGAG
AGATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATTGT
GATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattctct
tcCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATGTA
ATCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGG
TTGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAAC
TATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAAGT
TTAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgttttga
aacaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGACT
TGAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAA
ATTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTAC
TTGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAAAC
CACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATCCA
ATGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGG
GATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCCAG
ATGACTGACGAGGAATTATATggtgaaaaaatctttttcatcatACGTTT
AATTCCCTATGATATTATTTTTGGAcatacctcggaggtcctataaatta
actgatgtccgtccgttcatccgtccgtccgtccgtctgttatcagcttt
tctcaggattggctcattagttgtttctaattttttgctcaaagatgcgt
attcgcaatgcttaaaacatgaccgagttcgatttttgagaaaaaaaatt
ttccagacaaaaatgccggaaatttccgtttttgcagatttttattacaa
agattatttataagaatgtccacgattaagcatggttcaatttttaatga
aactgattttggtacaggaactttctaaaaatcgctagaacagccgagaa
tcgccggatttcttgaattattattattaatattattctgcattttcata
ctattgttgtcatttttcaattgtcttattacatatcttcaggtaggtcc
attcagcatgtagcttgtttatATTATGTTTTACGTTTTCGAGATTGTAA
ATATCGTGTTCAtagattatatttttttatcaatcgTTTATTTAAAGAAT
TATATTATAC

Run BLAST on NCBI

transcript from alignment at scaffold_86:293406..298845+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072847 ID=TCONS_00072847|Name=TCONS_00072847|organism=Clytia hemisphaerica|type=transcript|length=5440bp|location=Sequence derived from alignment at scaffold_86:293406..298845+ (Clytia hemisphaerica)
ttagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACG
CAGGTAAGACGTAAAGGGAAACTAAAACTTTGATAAAAACTTACCCATAA
TGTTTTTAGTAAGCTCAACTAGGAAGAAATTTTAAGCAATTGGACAATAC
CAACCGAGAAAACACCCTTTTCAccgatttaaaatttttctttttgttaa
agTCCATTTTACAACATAAGTAACCCTATAAATGAGCCAGTTGGTCATTC
TTCTATTATCAGTTTTTCttgtgattggctcattagctttttatgatatt
ttgcatGACGATGctgatgatttgattttgttagGATTACTCAAATGGGA
TTAGTCGACGTAGTTCACAAATGTTGATTTTGTTTGATCTTCACTGACCA
TTATTTTACAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTT
GCTTCATATCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGA
TATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGTTTTTTA
GTACCTTGTTGACAAATTTCTCTTCGCGAACCAATGTTTTGTAAATCAAT
TTAACCAGATTAGTTGTTCAGCTCAGTAGAGTAtcaagtaataagattct
tggCTTTTACACATGTTTTATCCAAGTTTGGTTTTTTTGAAATAcactat
tttttttctcttgtcGTTCAATTTTGTTAGGGAAGTCGTTGTACTGAGTG
ATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCG
AAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATT
GAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAG
CAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGAC
AAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAAC
AAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatg
atgatttAGCGTTTTACGGAATCTCAGTAAGCTCTAAGgacaattcaaat
tttacttAAAGATAAACAATTGATATGCTATATTGCTTTAATTGATCTTG
GTCAATCAACGTGGTATTCTATCTAGTTGTCGATACAATAACACTAAGAG
AGCCCTGTTGTAccatataaataaaaaattgattggAGTACCGCAAATTT
TTTCCGTCAGTAGATgcagacctgatttagcggccgaagacctgattaGA
AAGTTACCGGCCTAATCTGAAGTTAGGGTAGTATGAATATATTGCACCTC
TCGGAATAGCATCAGTTGCGATGGCCCAGTGGTTACCACAGTGGTCTTGT
AGACGGGAGATGAGTAGTTCAATATGAGGTATTCGCAttaatttcattct
ttttagtttaaaatcttttaacttgttttttttttcaaaacatttccatt
gaaacatcatataaAAATCTTGCTTGAATTCATATAAAGGATATAAAACA
AATTTCTACTCAATTTATTTTCTGCAAGTCTTCGGCCTAGATACGAACGC
TAAATCAGGTCTGTGACCGTTAGTTTAGGTTTGCGTTCGCTGATTGAAAA
GGAATCTGTGGAGGTTCGTGCATATAAAAGTACCCCACATCTGTTATATA
ACTGTATCATTTTAATTCGTTAATGATTTTATTATTCAGGCTCAGGAAGA
TGTTTCATCTAAAGCTTCTCCGTCAGTGTAAGCATCATATTTTGTTAAAG
CAGAATGCAGTACCCTTTTTACAAAGACTTTTGTCCTGTGTTTCacaaaa
attagtgaaaatgggggggggggttataaATGAATTAAATTCAACAAAtc
aagtctttttttttgctccATTCGCAAAAGTGAATActcgcgaaattcaa
aaatttcggcAAAAGCTTTTTTACGCAAAAGATTTTCCCCTAGAACTATG
TTTTTGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAG
CTCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATT
GATGGTTTGGAAGAAGAATATTTGATGGAAAGATTCCAAGGAGCTCTGAA
AGACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTC
AACAAACATTCCTctctctttttattctcttcCCGTAAGTCCTAATTTCT
GATTTTGAAAATGTCGTGTATTCCTTATCACTTGGAATAACTATTTGCTT
CTTTTCAGTACCCCTCTTTAGAGAAAAGCCGACGGGAAAAGATTtccaat
aaattttattttattgaataaacGTCTTTTCTCTAGAAGGGACGTGAATC
TTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGACTG
GCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGTATG
AAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTGACC
TTtttataccctggaccaagtttctcaatcccggccaagcaaaatctttg
atcagagttttttgaaaagtggtaccctaatggcggcactgaTCAATGTg
taatgcatcgagagcgctagatctactttccctcgaaaacttttgatgat
gtagcggcgttaaggccggcgcaaatgaatccaacattcaatccaacatt
tccaattcattgttggacgaaatgttggacgaaaagtcacgtggaaaaat
ttgaaaagttgcatgaaaagtcatttgcgcaaAAACNGGAACTATGTTTT
TGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGCTCC
ACCTCAAGAAGGTTCCAAAGAGTTCACAGTGCTGTCTTGGAACATTGATG
GTTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGAC
ATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACA
AACATTCCTctctctttttattctcttcCCGTAAGTCCTAatttctgatt
ttgaaaaatgtcgtGTATTCCTTATCACTTGGAATAACTACTTGCTTCTT
TTCAGTATCCCCGACGGGAAAAGATTTCCaataaattttattattattaa
aaaaaaaaacttttttattgaaTAAACGTCTTTTCTCTAGAAGGGACGTG
AATCTTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATG
ACTGGCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTG
TATGAAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCT
GACCTTtttataccctggaccaagtttctcaattccggccaagcaaaatc
tttgatcagagttttttgaaaagtggtaccctaatggcggcactgaTCAA
TGTgtaatgcatcgagagcgctagatctactttccctcgaaaacttttga
tgatgtagcggcgttaaggccggcgcaaatgaatccaacatttccaattc
attgttggacgaaatgttggacgaaaagtcacgtggaaaaatttgaaaag
ttgcatgaaaagtcatttgcgcaaaaatgtcaaacattttcatccaacac
gATTACGCAAATTCATACAACATTGAAACCaacataaaagtgacgtcaat
ctcattaaaaaatgttggatgaaaagttTGACGGCGATCAAtcttcatcc
aacatgatttccaacaattttcttaaaaagttgcaattttaagACTTGCG
CAAACGaacccaacatttgatccaacaataatgtgggatcaaatgttgga
ttcatttgcaGAGGTTATTggaacactgcaatggcttctttacgggcacc
aattcaaaaaaaaaaccttagatcaaagatggcggatatatcTTGggcca
gggatatataaaggtcagtgggttcACTACATAAAAGCACAATCATCAAC
TGAGTGAATATAAGTGAACTAAAATTTTGATTCACAAGTTCTGTCAGTtg
ccttttcaacattttgatactgggaaaattgaaaacaatagGTTTCAAAA
TCACCTTAAAATAATGGGATAAGTAAGAAAAAGGAATATAAAACGCCTTT
ATACACCTCCAAGTTTACGGACGGTTCATTTTAGTCTTTACGTGATTCGA
ACATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACC
GCACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCC
AAATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCT
GTTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGA
GagacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCCGA
GCGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAGAT
TTGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAAC
GGCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATG
ATAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGA
ATGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGA
ATTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcatt
ttggaattttaagcAAATTCATTCTTCCAGATGACTGACGAGGAATTATA
TggtgaaaaaatctttttcatcatACGTTTAATTCCCTATGATATTATTT
TTGGAcatacctcggaggtcctataaattaactgatgtccgtccgttcat
ccgtccgtccgtccgtctgttatcagcttttctcaggattggctcattag
ttgtttctaattttttgctcaaagatgcgtattcgcaatgcttaaaacat
gaccgagttcgatttttgagaaaaaaaattttccagacaaaaatgccgga
aatttccgtttttgcagatttttattacaaagattatttataagaatgtc
cacgattaagcatggttcaatttttaatgaaactgattttggtacaggaa
ctttctaaaaatcgctagaacagccgagaatcgccggatttcttgaatta
ttattattaatattattctgcattttcatactattgttgtcatttttcaa
ttgtcttattacatatcttcaggtaggtccattcagcatgtagcttgttt
atATTATGTTTTACGTTTTCGAGATTGTAAATATCGTGTTCAtagattat
atttttttatcaatcgTTTATTTAAAGAATTATATTATAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045215	XLOC_045215	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_86	supercontig	scaffold_86:293406..298845 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0767236	0.599417	0.206379	0.142648	0.201645	0.462035	0.298468	0.900055	0.243886	0.484218	0	0	0	0	0	0	0	0	0	0.150821	2.39457	2.40941	0	0.0481398	0	0

Blast

[Close]

BLAST of TCONS_00072847 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.915e-46
Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 3

Query:  579 QEGSKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 1340
            QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+   +  L      Y I T   +GYF  IM LKK  VK+  + +   F S++M R+ L   + + G  + +MTSHLES +  AAER  QLK   + + ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:  108 QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358

The following BLAST results are available for this feature:

BLAST of TCONS_00072847 vs. Swiss-Prot (Human)

BLAST of TCONS_00072847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TYDP2	7.915e-46	37.50	Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN...	[more]

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TCONS_00072847 (transcript) - C. hemisphaerica