TCONS_00072844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072844
Unique NameTCONS_00072844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072844 ID=TCONS_00072844|Name=TCONS_00072844|organism=Clytia hemisphaerica|type=transcript|length=1395bp
GTTTATAGATtactaaaaatgaaataaaaaactaGAAAGATTAATGAATG
GATGGAAAAGATCACCAAAAATGAAGTAGTCATGATGATTTAGAAAGATA
AAAGATATGGCACTCCCAACTTCCTCTTCTGCAAAGCGAAAACAAAGGGA
AGTCATTGTATTGAGTGATGACGACAacgatgatgacgtcatcactaaaC
AACCGGTAACGAAGAAAACTAAAGCAAAGAATAATGATGGAGACGATCTT
ACTCATTTATTAAATGACCAAAGTGATGACAACATCGCTAAACAACCGGT
ACCGAAGAAAGCCAAAACAAATGATAGTGGGAAAGATGACCTCACTCATT
TACTAAATAATGACGATGATGATTTAGCATTTCATGAGATCCCAACTGCG
GATGATGGTGCAAATTCCAACGATACAACACCCGAAGCTCCACCTCAAGA
AGGTCCAAAAGAATTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAG
ACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAG
AAATTACCGACCATTGTGATGCTTCAAGAAGTTGTCCACGAACATTACCT
AAATTTAATTCTCATCCTCTCCTCTGTTTACGAGGTTCGCTCTTTGATGC
AGAATGGTTATTTCAATGTTATCCTGTTCCTAAAGAAATCACATGTAGAA
ATAATTGGTGAGCTGGACGGTAAGTTTTTCCCTTCCTCTCAAATGCAACG
CCACTATCTCTCTCAGAACATTCACATTTACGGGAAAAATATTACGGTGA
TGACGTCACACTTGGAAAGTTTAAAAGAAAGCGCAGCAGAGAGACAAAAA
CAgttgaaacaatgttttcaAATGATGACGGATTCACCTTGCGAtacaaa
ctttatttttgctGGTGATTTGAATATGAGGGCGGaagatttaaagaaag
ttgGCGGGATTCCGCCTAAAATTACGGACGCCTGGGAAACGGCTGGAGAA
AATCCGGGCACCAAGTTCACTTGGGATCTGGAATTGAATGATAATAAACG
GTTTCCGAACTGTAAACCACGTGCACGTTTTGACCGGATGTTTTTCAAGA
GATCACAATCGACTCCGGTTCAATGTATTGGTTTTGAACTGGTTGGATTT
GAAAGACTGTCGTGTGGGATGTTTCCGAGtgaccattttggaattttagg
cAAATTTATTCTTCCAGATGACTAAATATAGTAgagttttttgaatttat
ttttacattGTATTTTGCGTTTTAGAGATTATGTATGTATGTTTTTTatc
aatcttttatttttaaagaaccATATTCACCTCTTGATCACGTTTATTTT
ATCCCCAataagaaaagtttttattcCAGGTACCATGATCGGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_86:289152..293129+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072844 ID=TCONS_00072844|Name=TCONS_00072844|organism=Clytia hemisphaerica|type=transcript|length=3978bp|location=Sequence derived from alignment at scaffold_86:289152..293129+ (Clytia hemisphaerica)
GTTTATAGATtactaaaaatgaaataaaaaactaGAAAGATTAATGAATG
GATGGAAAAGATCACCAAAAGTAAGTCACCAGATCAGGATTGTTCAACTT
TAACCAAAAAGACAAACTTGCCAGTAGAAGAATGGGGGGGAGGTAAGCCA
GGAAGAAATATTATAAGTCTAACATTGTcggcaataaatttttttttgtt
ttttatttttcgtttcAATTACAATTGTCTTTCAAATAACAATTATGAAT
AATGACTGATTTcaacgatgacgtcataacttgACCTTTCTGTCCTTTAC
TTCgcgaaatattacttttcagATAAGTGGTGCTCTTTGGAATGgttgta
taactttttttataatttcgagaaaaaaaaatccagtaTTTTATACTACT
GATACATGATAAATGTACCAAATTTCGGGGCTTATGGACTCACATAATGT
TTCAGTACTGATTCTGTAAAGATTTTATGCTTACTCTATTTCAGATGAAG
TAGTCATGATGATTTAGAAAGATAAAAGATATGGCACTCCCAACTTCCTC
TTCTGCAAAGCGAAAACAAAGgtttgatttcttttgatactTCGTTGGAA
ACATATTccttgaaaattctaaaaattaaaaaaaaggttgGAGTAGCAAA
CGATTACACGATACTACCTAacgcaccaacacttaacatttattttccaa
cttttaattgcactgttcaaaaataaaaacataacccccgtttttagtaa
taagttggagatttgatatttcacagaaaagtgctgcTAAGgagtatttc
gggtcccatatcttcctaAGGACTTtcctgtttgccttgaaatttgacaa
ccttcttTACCTAAGGCTGAtttaccactggtgtaaaaattaaagttata
gcataaatagaaaaaaagcacaatttttacaatcgcaaatttaaccgcta
aaaatcgcgaatttttcaaccaaaaatacagtcaaatatagcgcttttga
ttctctaaaacaagcaaaaaaaaattccacaattatatttgactatcata
AGTCACAGGTATTCTTGTtcccactgccaattatatctggacagacttta
ggtaTAGGATTTATCGAGGTTTGCCTTTTTTGAGATTTATCaaagtttta
atttctttttcaaaaaaagtggattttaGAAATACAAAAGACGAAATGAA
TTTCATTCTCAAAAATCTTTCCTTCACTTTTAAACCAATTTCAGGGAAGT
CATTGTATTGAGTGATGACGACAacgatgatgacgtcatcactaaaCAAC
CGGTAACGAAGAAAACTAAAGCAAAGAATAATGATGGAGACGATCTTACT
CATTTATTAAATGACCAAAGTGATGACAACATCGCTAAACAACCGGTACC
GAAGAAAGCCAAAACAAATGATAGTGGGAAAGATGACCTCACTCATTTAC
TAAATAATGACGATGATGATTTAGCATTTCATGAGATCCCAGTATGCCTT
TAAGGACCATCCAGAAAATTAGTCAATGGCCAATTATTTAGGACCCATTG
TTTTTTACATCGTTATAAGATTCCCAAATTCCGTGAAATTACATTTTGAG
AAATCCATTCTGATTGTTTTCCCGTCTGTCCGGAAACTTTTGGCCagcct
tttttcatttttcaaaacatttttttggagtCCACGGAGAAATGCTTAGG
GTCTTCAAATGATTTGAGGCTACTGAATAAGCTTctttttattgagttta
attTTAAAATCTGGTTTTCCTTTTCAGACTGCGGATGATGGTGCAAATTC
CAACGATACAACACCCGAGTAAGTATGAATACAATTTTTAAGTAACAGGA
ATTATCGatgttaaaattaaaaaacgacGATTTATTTACACTGAAACCTA
TCAACATTCTATATCAATGTTAAAGTCTTATCTCGTcataaaaataatct
ttaattcCTGTTCTGGAAGCTCAAACGTTATATAAACGTATAAATACAAA
CAGCATACTCTCTAATTTCCCCTGTAGAGCTCCACCTCAAGAAGGTCCAA
AAGAATTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAGACGAATAT
TTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAGAAATTACC
GACCATTGTGATGCTTCAAGAAGTTGTCCACGAACATTACCTAAATTTAA
TTCTCATCCTCTCCTCGTAagtgtttgttgtttgtttaaGGAACAATGGC
CGAGTGTTCGCAACAACAAATCCCCTCTCCTCTCAATGCTCATAGAGAGC
GGAGATGTTTGTtaaatgcggtgatagcatagcaaaattgagtggctttg
aGGGCTTTGAAGACCTGACTAGGCTCCAATTGACCCCCTGAAtacgatac
acgttttttttattagaacccctaaaatttggctgagcctggatgtgctt
attttttggcagttttcagcctaaaatgttcttaaatgcgttcttaattt
tacaGACTATACTCTAAATCGGCAATATCATGCacaataaagagcactta
aaattggtaaaattcggacaatatttgactctcaattttagaaaatccat
ccctaagttcggttaaaactgcttgaaaagaggaaaaaattatagtttct
tgtcatttttttccaaactgaggctgggcatgttcttatgatgttcttaa
tttttcgaagaatttcagcctcagtgctcttataaactgggttctaataa
aaaataaaacgtgtagaaaattctgaaaacgtCCTACATTTACGAGCTAT
CCACGTAATGTTGATTCTATATACACGCACGTNAAAACGTgtagaaaatt
ctgaaaacgtCCTACCTTTACGAGCTATCTACGTAATGTTGATTCTATCT
ACAcgcacgtttttataagaaaaaattgaatagcAAAACAAAGGACCTTC
TGTATAAAGGTTACTAAATACATTGTGTTTAGTTCAGTTTCTGGAACTGA
AAAAAGTGAGTTATCctttatacagggtgtcccgaataAAGGTGCTACGT
CAGATCCTTTATATATAATTGGTGTTTAACTCGTCAACGAgtataaatca
aaatatgatttAAATAGCTTTACACTAGCAAAGTTTTATTATAGATCTAG
CCGCTGTACAGACCTTCAAAATTATTTCTCAGTCTACCGATGATATATTA
TTTCTAGTGTTTACGAGGTTCGCTCTTTGATGCAGAATGGTTATTTCAAT
GTTATCCTGTTCCTAAAGAAATCACATGTAGAAATAATTGGTGAGCTGGA
CGGTAAGTTTTTCCCTTCCTCTCAAATGCAACGCCACTATCTCTCTCAGA
ACATTCACATTTACGGGAAAAATATTACGGTGATGACGTCACACTTGGAA
AGTTTAAAAGAAAGCGCAGCAGAGAGACAAAAACAgttgaaacaatgttt
tcaAATGATGACGGATTCACCTTGCGAtacaaactttatttttgctGGTG
ATTTGAATATGAGGGCGGaagatttaaagaaagttgGCGGGATTCCGCCT
AAAATTACGGACGCCTGGGAAACGGCTGGAGAAAATCCGGGCACCAAGTT
CACTTGGGATCTGGAATTGAATGATAATAAACGGTTTCCGAACTGTAAAC
CACGTGCACGTTTTGACCGGATGTTTTTCAAGAGATCACAATCGACTCCG
GTTCAATGTATTGGTTTTGAACTGGTTGGATTTGAAAGACTGTCGTGTGG
GATGTTTCCGAGtgaccattttggaattttaggcAAATTTATTCTTCCAG
ATGACTAAATATAGTAgagttttttgaatttatttttacattGTATTTTG
CGTTTTAGAGATTATGTATGTATGTTTTTTatcaatcttttatttttaaa
gaaccATATTCACCTCTTGATCACGTTTATTTTATCCCCAataagaaaag
tttttattcCAGGTACCATGATCGGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045215XLOC_045215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072844-exon-scaffold_86-1491911889:289152..289221TCONS_00072844-exon-scaffold_86-1491911889:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:289152..289221TCONS_00072844-exon-scaffold_86-1510915933:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:289152..289221TCONS_00072844-exon-scaffold_86-1575043694:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:289646..289722TCONS_00072844-exon-scaffold_86-1491911889:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:289646..289722TCONS_00072844-exon-scaffold_86-1510915933:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:289646..289722TCONS_00072844-exon-scaffold_86-1575043694:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:290396..290642TCONS_00072844-exon-scaffold_86-1491911889:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:290396..290642TCONS_00072844-exon-scaffold_86-1510915933:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:290396..290642TCONS_00072844-exon-scaffold_86-1575043694:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:290929..290969TCONS_00072844-exon-scaffold_86-1491911889:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:290929..290969TCONS_00072844-exon-scaffold_86-1510915933:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:290929..290969TCONS_00072844-exon-scaffold_86-1575043694:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:291179..291367TCONS_00072844-exon-scaffold_86-1491911889:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:291179..291367TCONS_00072844-exon-scaffold_86-1510915933:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:291179..291367TCONS_00072844-exon-scaffold_86-1575043694:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:292359..293129TCONS_00072844-exon-scaffold_86-1491911889:292359..293129Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:292359..293129TCONS_00072844-exon-scaffold_86-1510915933:292359..293129Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:292359..293129TCONS_00072844-exon-scaffold_86-1575043694:292359..293129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:289152..293129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.7256	22.7866	8.06203	5.36545	9.45722	7.84994	10.1246	10.4313	6.14392	7.57724	5.88767	4.4123	6.74812	6.21086	7.50471	10.8041	11.1274	10.9911	3.81837	2.89855	5.56631	6.33571	24.9522	18.7766	9.2917	10.0841	5.5219	4.4625	15.974	17.2616
Blast
[Close]
BLAST of TCONS_00072844 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.074e-50
Identity = 99/267 (37.08%), Postives = 154/267 (57.68%), Query Frame = 2 
Query:  404 DGANSNDTTPEAPPQEGPKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVHEHYLNLILILSSVYEVRSLMQNGYFNVILFLKKSHVEIIGELDGKFFPSSQMQRHYLSQNIHIYGKNITVMTSHLESLKESAAERQKQLKQCFQMMTDSPCDTNFIFAGDLNMRAEDLKKVGGIPPKITDAWETAGENPGTKFTWDLELNDNKRF-PNCKPRARFDRMFFK-RSQSTPVQCIGFELVGFERLSCGMFPSDHFGIL 1198
            D   S  +  E   QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+  +Y + +   SS YE+ +  + GYF  I+ LKKS V++  + +   FPS++M R+ L  ++++ G  + +MTSHLES +  AAER  QLK   + M ++P     IFAGD N+R  ++ + GG+P  I D WE  G+    ++TWD ++N N      CK   RFDR+FF+  ++   +     +L+G E+L CG FPSDH+G+L
Sbjct:   94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYY-SYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACK--LRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLL 355
The following BLAST results are available for this feature:
BLAST of TCONS_00072844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP25.074e-5037.08Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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