TCONS_00072844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072844
Unique NameTCONS_00072844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072844 ID=TCONS_00072844|Name=TCONS_00072844|organism=Clytia hemisphaerica|type=transcript|length=1395bp
GTTTATAGATtactaaaaatgaaataaaaaactaGAAAGATTAATGAATG
GATGGAAAAGATCACCAAAAATGAAGTAGTCATGATGATTTAGAAAGATA
AAAGATATGGCACTCCCAACTTCCTCTTCTGCAAAGCGAAAACAAAGGGA
AGTCATTGTATTGAGTGATGACGACAacgatgatgacgtcatcactaaaC
AACCGGTAACGAAGAAAACTAAAGCAAAGAATAATGATGGAGACGATCTT
ACTCATTTATTAAATGACCAAAGTGATGACAACATCGCTAAACAACCGGT
ACCGAAGAAAGCCAAAACAAATGATAGTGGGAAAGATGACCTCACTCATT
TACTAAATAATGACGATGATGATTTAGCATTTCATGAGATCCCAACTGCG
GATGATGGTGCAAATTCCAACGATACAACACCCGAAGCTCCACCTCAAGA
AGGTCCAAAAGAATTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAG
ACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAG
AAATTACCGACCATTGTGATGCTTCAAGAAGTTGTCCACGAACATTACCT
AAATTTAATTCTCATCCTCTCCTCTGTTTACGAGGTTCGCTCTTTGATGC
AGAATGGTTATTTCAATGTTATCCTGTTCCTAAAGAAATCACATGTAGAA
ATAATTGGTGAGCTGGACGGTAAGTTTTTCCCTTCCTCTCAAATGCAACG
CCACTATCTCTCTCAGAACATTCACATTTACGGGAAAAATATTACGGTGA
TGACGTCACACTTGGAAAGTTTAAAAGAAAGCGCAGCAGAGAGACAAAAA
CAgttgaaacaatgttttcaAATGATGACGGATTCACCTTGCGAtacaaa
ctttatttttgctGGTGATTTGAATATGAGGGCGGaagatttaaagaaag
ttgGCGGGATTCCGCCTAAAATTACGGACGCCTGGGAAACGGCTGGAGAA
AATCCGGGCACCAAGTTCACTTGGGATCTGGAATTGAATGATAATAAACG
GTTTCCGAACTGTAAACCACGTGCACGTTTTGACCGGATGTTTTTCAAGA
GATCACAATCGACTCCGGTTCAATGTATTGGTTTTGAACTGGTTGGATTT
GAAAGACTGTCGTGTGGGATGTTTCCGAGtgaccattttggaattttagg
cAAATTTATTCTTCCAGATGACTAAATATAGTAgagttttttgaatttat
ttttacattGTATTTTGCGTTTTAGAGATTATGTATGTATGTTTTTTatc
aatcttttatttttaaagaaccATATTCACCTCTTGATCACGTTTATTTT
ATCCCCAataagaaaagtttttattcCAGGTACCATGATCGGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_86:289152..293129+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072844 ID=TCONS_00072844|Name=TCONS_00072844|organism=Clytia hemisphaerica|type=transcript|length=3978bp|location=Sequence derived from alignment at scaffold_86:289152..293129+ (Clytia hemisphaerica)
GTTTATAGATtactaaaaatgaaataaaaaactaGAAAGATTAATGAATG GATGGAAAAGATCACCAAAAGTAAGTCACCAGATCAGGATTGTTCAACTT TAACCAAAAAGACAAACTTGCCAGTAGAAGAATGGGGGGGAGGTAAGCCA GGAAGAAATATTATAAGTCTAACATTGTcggcaataaatttttttttgtt ttttatttttcgtttcAATTACAATTGTCTTTCAAATAACAATTATGAAT AATGACTGATTTcaacgatgacgtcataacttgACCTTTCTGTCCTTTAC TTCgcgaaatattacttttcagATAAGTGGTGCTCTTTGGAATGgttgta taactttttttataatttcgagaaaaaaaaatccagtaTTTTATACTACT GATACATGATAAATGTACCAAATTTCGGGGCTTATGGACTCACATAATGT TTCAGTACTGATTCTGTAAAGATTTTATGCTTACTCTATTTCAGATGAAG TAGTCATGATGATTTAGAAAGATAAAAGATATGGCACTCCCAACTTCCTC TTCTGCAAAGCGAAAACAAAGgtttgatttcttttgatactTCGTTGGAA ACATATTccttgaaaattctaaaaattaaaaaaaaggttgGAGTAGCAAA CGATTACACGATACTACCTAacgcaccaacacttaacatttattttccaa cttttaattgcactgttcaaaaataaaaacataacccccgtttttagtaa taagttggagatttgatatttcacagaaaagtgctgcTAAGgagtatttc gggtcccatatcttcctaAGGACTTtcctgtttgccttgaaatttgacaa ccttcttTACCTAAGGCTGAtttaccactggtgtaaaaattaaagttata gcataaatagaaaaaaagcacaatttttacaatcgcaaatttaaccgcta aaaatcgcgaatttttcaaccaaaaatacagtcaaatatagcgcttttga ttctctaaaacaagcaaaaaaaaattccacaattatatttgactatcata AGTCACAGGTATTCTTGTtcccactgccaattatatctggacagacttta ggtaTAGGATTTATCGAGGTTTGCCTTTTTTGAGATTTATCaaagtttta atttctttttcaaaaaaagtggattttaGAAATACAAAAGACGAAATGAA TTTCATTCTCAAAAATCTTTCCTTCACTTTTAAACCAATTTCAGGGAAGT CATTGTATTGAGTGATGACGACAacgatgatgacgtcatcactaaaCAAC CGGTAACGAAGAAAACTAAAGCAAAGAATAATGATGGAGACGATCTTACT CATTTATTAAATGACCAAAGTGATGACAACATCGCTAAACAACCGGTACC GAAGAAAGCCAAAACAAATGATAGTGGGAAAGATGACCTCACTCATTTAC TAAATAATGACGATGATGATTTAGCATTTCATGAGATCCCAGTATGCCTT TAAGGACCATCCAGAAAATTAGTCAATGGCCAATTATTTAGGACCCATTG TTTTTTACATCGTTATAAGATTCCCAAATTCCGTGAAATTACATTTTGAG AAATCCATTCTGATTGTTTTCCCGTCTGTCCGGAAACTTTTGGCCagcct tttttcatttttcaaaacatttttttggagtCCACGGAGAAATGCTTAGG GTCTTCAAATGATTTGAGGCTACTGAATAAGCTTctttttattgagttta attTTAAAATCTGGTTTTCCTTTTCAGACTGCGGATGATGGTGCAAATTC CAACGATACAACACCCGAGTAAGTATGAATACAATTTTTAAGTAACAGGA ATTATCGatgttaaaattaaaaaacgacGATTTATTTACACTGAAACCTA TCAACATTCTATATCAATGTTAAAGTCTTATCTCGTcataaaaataatct ttaattcCTGTTCTGGAAGCTCAAACGTTATATAAACGTATAAATACAAA CAGCATACTCTCTAATTTCCCCTGTAGAGCTCCACCTCAAGAAGGTCCAA AAGAATTCACAGTGCTGTCATGGAACATTGATGGTTTGGAAGACGAATAT TTGATGGAGAGATTCCAAGGAGCTCTGAAAGACATCTTGAAGAAATTACC GACCATTGTGATGCTTCAAGAAGTTGTCCACGAACATTACCTAAATTTAA TTCTCATCCTCTCCTCGTAagtgtttgttgtttgtttaaGGAACAATGGC CGAGTGTTCGCAACAACAAATCCCCTCTCCTCTCAATGCTCATAGAGAGC GGAGATGTTTGTtaaatgcggtgatagcatagcaaaattgagtggctttg aGGGCTTTGAAGACCTGACTAGGCTCCAATTGACCCCCTGAAtacgatac acgttttttttattagaacccctaaaatttggctgagcctggatgtgctt attttttggcagttttcagcctaaaatgttcttaaatgcgttcttaattt tacaGACTATACTCTAAATCGGCAATATCATGCacaataaagagcactta aaattggtaaaattcggacaatatttgactctcaattttagaaaatccat ccctaagttcggttaaaactgcttgaaaagaggaaaaaattatagtttct tgtcatttttttccaaactgaggctgggcatgttcttatgatgttcttaa tttttcgaagaatttcagcctcagtgctcttataaactgggttctaataa aaaataaaacgtgtagaaaattctgaaaacgtCCTACATTTACGAGCTAT CCACGTAATGTTGATTCTATATACACGCACGTNAAAACGTgtagaaaatt ctgaaaacgtCCTACCTTTACGAGCTATCTACGTAATGTTGATTCTATCT ACAcgcacgtttttataagaaaaaattgaatagcAAAACAAAGGACCTTC TGTATAAAGGTTACTAAATACATTGTGTTTAGTTCAGTTTCTGGAACTGA AAAAAGTGAGTTATCctttatacagggtgtcccgaataAAGGTGCTACGT CAGATCCTTTATATATAATTGGTGTTTAACTCGTCAACGAgtataaatca aaatatgatttAAATAGCTTTACACTAGCAAAGTTTTATTATAGATCTAG CCGCTGTACAGACCTTCAAAATTATTTCTCAGTCTACCGATGATATATTA TTTCTAGTGTTTACGAGGTTCGCTCTTTGATGCAGAATGGTTATTTCAAT GTTATCCTGTTCCTAAAGAAATCACATGTAGAAATAATTGGTGAGCTGGA CGGTAAGTTTTTCCCTTCCTCTCAAATGCAACGCCACTATCTCTCTCAGA ACATTCACATTTACGGGAAAAATATTACGGTGATGACGTCACACTTGGAA AGTTTAAAAGAAAGCGCAGCAGAGAGACAAAAACAgttgaaacaatgttt tcaAATGATGACGGATTCACCTTGCGAtacaaactttatttttgctGGTG ATTTGAATATGAGGGCGGaagatttaaagaaagttgGCGGGATTCCGCCT AAAATTACGGACGCCTGGGAAACGGCTGGAGAAAATCCGGGCACCAAGTT CACTTGGGATCTGGAATTGAATGATAATAAACGGTTTCCGAACTGTAAAC CACGTGCACGTTTTGACCGGATGTTTTTCAAGAGATCACAATCGACTCCG GTTCAATGTATTGGTTTTGAACTGGTTGGATTTGAAAGACTGTCGTGTGG GATGTTTCCGAGtgaccattttggaattttaggcAAATTTATTCTTCCAG ATGACTAAATATAGTAgagttttttgaatttatttttacattGTATTTTG CGTTTTAGAGATTATGTATGTATGTTTTTTatcaatcttttatttttaaa gaaccATATTCACCTCTTGATCACGTTTATTTTATCCCCAataagaaaag tttttattcCAGGTACCATGATCGGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045215XLOC_045215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072844-exon-scaffold_86-1491911889:289152..289221TCONS_00072844-exon-scaffold_86-1491911889:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:289152..289221TCONS_00072844-exon-scaffold_86-1510915933:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:289152..289221TCONS_00072844-exon-scaffold_86-1575043694:289152..289221Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:289646..289722TCONS_00072844-exon-scaffold_86-1491911889:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:289646..289722TCONS_00072844-exon-scaffold_86-1510915933:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:289646..289722TCONS_00072844-exon-scaffold_86-1575043694:289646..289722Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:290396..290642TCONS_00072844-exon-scaffold_86-1491911889:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:290396..290642TCONS_00072844-exon-scaffold_86-1510915933:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:290396..290642TCONS_00072844-exon-scaffold_86-1575043694:290396..290642Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:290929..290969TCONS_00072844-exon-scaffold_86-1491911889:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:290929..290969TCONS_00072844-exon-scaffold_86-1510915933:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:290929..290969TCONS_00072844-exon-scaffold_86-1575043694:290929..290969Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:291179..291367TCONS_00072844-exon-scaffold_86-1491911889:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:291179..291367TCONS_00072844-exon-scaffold_86-1510915933:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:291179..291367TCONS_00072844-exon-scaffold_86-1575043694:291179..291367Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1491911889:292359..293129TCONS_00072844-exon-scaffold_86-1491911889:292359..293129Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1510915933:292359..293129TCONS_00072844-exon-scaffold_86-1510915933:292359..293129Clytia hemisphaericaexon
TCONS_00072844-exon-scaffold_86-1575043694:292359..293129TCONS_00072844-exon-scaffold_86-1575043694:292359..293129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:289152..293129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.7256 22.7866 8.06203 5.36545 9.45722 7.84994 10.1246 10.4313 6.14392 7.57724 5.88767 4.4123 6.74812 6.21086 7.50471 10.8041 11.1274 10.9911 3.81837 2.89855 5.56631 6.33571 24.9522 18.7766 9.2917 10.0841 5.5219 4.4625 15.974 17.2616
Blast
BLAST of TCONS_00072844 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.074e-50
Identity = 99/267 (37.08%), Postives = 154/267 (57.68%), Query Frame = 2
Query:  404 DGANSNDTTPEAPPQEGPKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVHEHYLNLILILSSVYEVRSLMQNGYFNVILFLKKSHVEIIGELDGKFFPSSQMQRHYLSQNIHIYGKNITVMTSHLESLKESAAERQKQLKQCFQMMTDSPCDTNFIFAGDLNMRAEDLKKVGGIPPKITDAWETAGENPGTKFTWDLELNDNKRF-PNCKPRARFDRMFFK-RSQSTPVQCIGFELVGFERLSCGMFPSDHFGIL 1198
            D   S  +  E   QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+  +Y + +   SS YE+ +  + GYF  I+ LKKS V++  + +   FPS++M R+ L  ++++ G  + +MTSHLES +  AAER  QLK   + M ++P     IFAGD N+R  ++ + GG+P  I D WE  G+    ++TWD ++N N      CK   RFDR+FF+  ++   +     +L+G E+L CG FPSDH+G+L
Sbjct:   94 DSTTSKISPSEDTQQENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYY-SYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACK--LRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLL 355          
The following BLAST results are available for this feature:
BLAST of TCONS_00072844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP25.074e-5037.08Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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