TCONS_00072843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072843
Unique NameTCONS_00072843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072843 ID=TCONS_00072843|Name=TCONS_00072843|organism=Clytia hemisphaerica|type=transcript|length=2800bp
ATTTTTACGTGTCTTCTTTAAAATTCACATTTCTTTCCTCCCAAAGGTTG
GTGCCCATTCCTTTTACCAAACAAATCGAACAATtgaaaaaagacaaaga
atATGAAATGGCTTTGGAATTATGTAAATTTCTGGATGATAAAGAACACA
GTCAAAAAATCATACCACATATCAAGAAGCTTCACGCTTTTGAGTTATTC
TGCTCAAAGAAATTTGAACAAGCCCTGAAGTTATTCAAGGAAATTGATGT
TGAACCGACCTATGTTATTGGCTTGTTCCCAGACCTCCTGCCAGAACAAT
ATCGTAAACAGATTCAATATCCAGCTCAAGTACCCAAGATGACTTCTGGT
GATTTACAAAAAGgttttCATTGTCTAACGGAATTCCTCACACGTATACG
AAATAAAAGTTTATCTGAAGCTAATAAAGGCACAAACGCAACGCCCACTT
CCGATCAgcctcgtaaaatgcttttacAAATTATTGATACATCTCTGTTG
AAATGCTACATGCAAACAAACGAAAACATGATTGCACCGTTATTGAGATT
GAAAGATAATCACTGTCATGTTGAAGAATGCGAACGGGTCCTTGCCAAAG
CGAAGAAGGTCAACGAGTTGGTGTTGTTGTATCAGAGCAAAGGGAATCAC
AAGAAAGCCTTAGATTTGCTATTACGGCAATCAGATATTCCTACAGGTCC
ATTGAGTGGTCCAAAGAAGACGGTGGACTATTTACAGCATCTTGGTGCAG
ACCATGTCCAACTTGTCATCGATTATTCAAAATGggttctcaaaaaacat
ccagaagaagggttgaaaatttttactgcTGACACACCTGAGGTGGAGTC
TTTGCCACGTGATCGAGTGCTCTCCCACTTGGAAGCTATAACACCACAGT
TAGTGATCTCCTATCTTGAGCATATTATTAACGATTGGAAAGATAGTCAT
CCTGAGTTCCATAATCGTTTGATTatcttttacaaagacaaaattCTCCC
GCTACTACGTGAGGAGCTTGTTGCTCCTAGCAACGATCCCGAAGGTGAAC
TGGCTACCTTTCGAACCAAACTTCTCTTCTTCCTGGAAACATCAACCAAT
TACCAGCCTTATAAATTATTAAGATTCTTCCCGCAAGATGTCTTATATGA
GGAGAGAGCTCTGTTGTTAGGTCGTTCCGGGCGCCACGAGGAAGCGTTAG
CGATATACATTTACGTGCTAAAGAACAACAAAATGGCGGAGAAGTACTGT
AGACGTCAGTACGAAATGAACGAGGAAGAGAACAGAAATGTATATTTAAG
TCTAGTCAAAATGTATTTGAATCCCCAAGAATTACCATCACTTGGCTTGC
CACAATCTACATTCACAGATGTCAAGTTAGAACCAAAAACCAAAGAAGCC
TTAGAGATCCTTAACAAGTATAATCAGAAAATTGATATTACACAAACATT
GGAGTTGTTACCTCAAACTACTGAAGTTAAGGATATCCGTATTTTCTTGA
TGCGTGTTTTGAAAGAGAAGATTCAACAACGTAGAAGTAGTATGGTTTTA
AAGAGTTTATTCTATAGAGACCATTTACAAGTACACGAGCAACGTATTTA
TTACCAGAGCACCAAATGTGTGATTACCGAGGAAAGAGCATGCCGAGTAT
GTCATAAACGTATCGGAACTAGTGCGTTTGCCATGTATCCGAACGGTGTT
ATTGTTCATTACTATTGTTGTAAAGATCGCCGGACATGCCCGGTCGATCC
GGATGCCTAGAAGACTGgttcttatttttgatttcttgtttTGAGGATTT
AAATAttacatagaaaaaaatcaagtagggtaaaaaaaaaattttaaaaa
cgtgaatttatatattatatttttgatggaaaactgttttttaattatta
tctttgaaaatttagTTAGCATTTAGTTCGTCTTTATTGTAAGCACCCCT
AAAATGAGACTGAATTCTTTCCTTGTGATGACAAGGGTTTCTGAATAAGA
AGATTTCCCGCGCATTGCTTTAACTTATTTTATGAATCGATCTGGTTTTC
TATAGCTATTATATTCCATACCACGGTGATTATAAGACCAATGTCTACAA
TTCTTCTGAAATTTAAAAGGGCAAGTATTTTTAAGTAGTTGTACTCTTAG
AGAAATTTTATAATGTAATAATTTGATAGATTTTAaaataatacacgctt
ttttattagaacacttgattaattataagaacacgaggctgaaatttctg
agaaaaaaagaagactgcTTTGGCCTcagattttcgagaaaatttatAAA
CTTATGATTATAATTTTCTTAgtaaagggctacttagactacacaatata
ttgtttattgacgaacaatatttcaTAATATCATTTttggaccgtaatgt
acgaaatAAATAGcaggtactctattataaaaagaaagtttctttctgta
aacaatccctctatattgttggaatattgcaaatcgagctgacaatatat
tgcggacaacttttcaatatattgccggcactcagcaatatatcaattgc
ctgacaatatatggTGTAGTGTATGCAGCCCTTAAGGAAGCTAAGTgtaa
aatgaaggtttttataACCTGAAAACTCTTGAAAGAGTAAGATTAGCTGA
GAGTGAGCCAAAATTTATactcgttcttataaaaaggcgtTCCAATAATC
ACGAGTACAAAATATGCATTTTCATATTATTATGACGTTGTAAATTATtg
ataatcaaatttaatattaaaatttttctttttgaaaatcaaaaaacatg
Run BLAST on NCBI

protein sequence of TCONS_00072843-protein

>TCONS_00072843-protein ID=TCONS_00072843-protein|Name=TCONS_00072843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
FYVSSLKFTFLSSQRLVPIPFTKQIEQLKKDKEYEMALELCKFLDDKEHS
QKIIPHIKKLHAFELFCSKKFEQALKLFKEIDVEPTYVIGLFPDLLPEQY
RKQIQYPAQVPKMTSGDLQKGFHCLTEFLTRIRNKSLSEANKGTNATPTS
DQPRKMLLQIIDTSLLKCYMQTNENMIAPLLRLKDNHCHVEECERVLAKA
KKVNELVLLYQSKGNHKKALDLLLRQSDIPTGPLSGPKKTVDYLQHLGAD
HVQLVIDYSKWVLKKHPEEGLKIFTADTPEVESLPRDRVLSHLEAITPQL
VISYLEHIINDWKDSHPEFHNRLIIFYKDKILPLLREELVAPSNDPEGEL
ATFRTKLLFFLETSTNYQPYKLLRFFPQDVLYEERALLLGRSGRHEEALA
IYIYVLKNNKMAEKYCRRQYEMNEEENRNVYLSLVKMYLNPQELPSLGLP
QSTFTDVKLEPKTKEALEILNKYNQKIDITQTLELLPQTTEVKDIRIFLM
RVLKEKIQQRRSSMVLKSLFYRDHLQVHEQRIYYQSTKCVITEERACRVC
HKRIGTSAFAMYPNGVIVHYYCCKDRRTCPVDPDA
Run BLAST on NCBI

transcript from alignment at scaffold_86:284948..288812+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072843 ID=TCONS_00072843|Name=TCONS_00072843|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at scaffold_86:284948..288812+ (Clytia hemisphaerica)
ATTTTTACGTGTCTTCTTTAAAATTCACATTTCTTTCCTCCCAAAGGTTG
GTGCCCATTCCTTTTACCAAACAAATCGAACAATtgaaaaaagacaaaga
atATGAAATGGCTTTGGAATTATGTAAATTTCTGGATGATAAAGAACACA
GTCAAAAAATCATACCACATATCAAGAAGCTTCACGCTTTTGAGTTATTC
TGCTCAAAGAAATTTGAACAAGCCCTGAAGTTATTCAAGGAAATTGATGT
TGAACCGACCTATGTTATTGGCTTGTTCCCAGACCTCCTGCCAGAACAAT
ATCGTAAACAGATTCAATATCCAGCTCAAGTACCCAAGATGACTTCTGGT
GATTTACAAAAAGGTATTTTCACTATAGATTAAGCTAAGTAGTAGCGGGC
CAAGCCTGgagttccgtgacatcttttttacgacctagccattttaaATT
CATCCGAAAGAACGGTATTCTTGAGAGGGAGGGCAAGGATAAGGCCctgg
aaacttttttatggaccaAAATCAGAAATCGCCTTTAAGGTCGATATCTG
AAAATACAGTACCTACTAAAGGGTTTATCCTCCCTATTTATATTTCTCAT
CTGGCTCGTGTATAGTACGTATACTTCCATCAAAATTGTTTAGAACTAGC
AATCTTTCAGtgtgattttttcacagaaattaacaaaattgttaAGAATA
GGCTTCAAACCGTCTCGAAAAATTTTGCTGACCTGCAAGAAGAAGATGGT
TTTCAATAAATATTAGGCTCTTAGATCTTTAGTAAAAAAATCCTCATAGC
ATTTGCGgcacatttttcttttgatataataatttctgctttattttttg
taggttttCATTGTCTAACGGAATTCCTCACACGTATACGAAATAAAAGT
TTATCTGAAGCTGTAAGTTTACTTCTTCTTTATtcattcaaaagttttaa
agcatGTTTACCAGGGAGCATCCATTGTTGCTCAAGTCTTTTAGCTAACG
TTTCTTGAAATCTACTCTTAATACATGAGGAGGAAGACTGGATTCGAATT
CATCAGGTATGAGTGGCGTCAAAACGTTTGTCGATGCATTCAGATTCCca
tagaaaaataattttgccaatttcCTTGTGAATTCATTACCAACACCTCA
AAAGCCGACCGCAccgttaaccctttgagtgccagggtccttttttctaa
gttttttttaaaaaatcgctagttcaaacttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgat
ttctaactcaaactgggcattacaggagggcttcgccctcctatatagcc
catgtcgtatatatacgacatcggcacttaaagggttaagggtTTATACT
GTATTGAGCCTGTCATATAATAATGTCATTATTTTAGAATAAAGGCACAA
ACGCAACGCCCACTTCCGATCAgcctcgtaaaatgcttttacAAATTATT
GATACATCTCTGTTGAAATGCTACATGCAAACAAACGAAAACATGATTGC
ACCGTTATTGAGATTGAAAGATAATCACTGTCATGTTGAAGAATGCGAAC
GGGTCCTTGCCAAAGCGAAGAAGGTCAACGAGTTGGTGTTGTTGTATCAG
AGCAAAGGGAATCACAAGAAAGCCTTAGATTTGCTATTACGGCAATCAGA
TATTCCTACAGGTCCATTGAGTGGTCCAAAGAAGACGGTGGACTATTTAC
AGCATCTTGGTGCAGACCATGTCCAACTTGTCATCGATTATTCAAAATGg
gttctcaaaaaacatccagaagaagggttgaaaatttttactgcTGACAC
ACCTGAGGTGGAGTCTTTGCCACGTGATCGAGTGCTCTCCCACTTGGAAG
CTATAACACCACAGTTAGTGATCTCCTATCTTGAGCATATTATTAACGAT
TGGAAAGATAGTCATCCTGAGTTCCATAATCGTTTGATTatcttttacaa
agacaaaattCTCCCGCTACTACGTGAGGAGCTTGTTGCTCCTAGCAACG
ATCCCGAAGGTGAACTGGCTACCTTTCGAACCAAACTTCTCTTCTTCCTG
GAAACATCAACCAATTACCAGCCTTATAAATTATTAAGATTCTTCCCGCA
AGATGTCTTATATGAGGAGAGAGCTCTGTTGTTAGGTCGTTCCGGGCGCC
ACGAGGAAGCGTTAGCGATATACATTTACGTGCTAAAGAACAACAAAATG
GCGGAGAAGTACTGTAGACGTCAGTACGAAATGAACGAGGAAGAGAACAG
AAATGTATATTTAAGTCTAGTCAAAATGTATTTGAATCCCCAAGAATTAC
CATCACTTGGCTTGCCACAATCTACATTCACAGATGTCAAGTTAGAACCA
AAAACCAAAGAAGCCTTAGAGATCCTTAACAAGTATAATCAGAAAATTGA
TATTACACAAACATTGGAGTTGTTACCTCAAACTACTGAAGTTAAGGATA
TCCGTATTTTCTTGATGCGTGTTTTGAAAGAGAAGATTCAACAACGTAGA
AGTAGTATGGTTTTAAAGAGTTTATTCTATAGAGACCATTTACAAGTACA
CGAGCAACGTATTTATTACCAGAGCACCAAATGTGTGATTACCGAGGAAA
GAGCATGCCGAGTATGTCATAAACGTATCGGAACTAGTGCGTTTGCCATG
TATCCGAACGGTGTTATTGTTCATTACTATTGTTGTAAAGATCGCCGGAC
ATGCCCGGTCGATCCGGATGCCTAGAAGACTGgttcttatttttgatttc
ttgtttTGAGGATTTAAATAttacatagaaaaaaatcaagtagggtaaaa
aaaaaattttaaaaacgtgaatttatatattatatttttgatggaaaact
gttttttaattattatctttgaaaatttagTTAGCATTTAGTTCGTCTTT
ATTGTAAGCACCCCTAAAATGAGACTGAATTCTTTCCTTGTGATGACAAG
GGTTTCTGAATAAGAAGATTTCCCGCGCATTGCTTTAACTTATTTTATGA
ATCGATCTGGTTTTCTATAGCTATTATATTCCATACCACGGTGATTATAA
GACCAATGTCTACAATTCTTCTGAAATTTAAAAGGGCAAGTATTTTTAAG
TAGTTGTACTCTTAGAGAAATTTTATAATGTAATAATTTGATAGATTTTA
aaataatacacgcttttttattagaacacttgattaattataagaacacg
aggctgaaatttctgagaaaaaaagaagactgcTTTGGCCTcagattttc
gagaaaatttatAAACTTATGATTATAATTTTCTTAgtaaagggctactt
agactacacaatatattgtttattgacgaacaatatttcaTAATATCATT
TttggaccgtaatgtacgaaatAAATAGcaggtactctattataaaaaga
aagtttctttctgtaaacaatccctctatattgttggaatattgcaaatc
gagctgacaatatattgcggacaacttttcaatatattgccggcactcag
caatatatcaattgcctgacaatatatggTGTAGTGTATGCAGCCCTTAA
GGAAGCTAAGTgtaaaatgaaggtttttataACCTGAAAACTCTTGAAAG
AGTAAGATTAGCTGAGAGTGAGCCAAAATTTATactcgttcttataaaaa
ggcgtTCCAATAATCACGAGTACAAAATATGCATTTTCATATTATTATGA
CGTTGTAAATTATtgataatcaaatttaatattaaaatttttctttttga
aaatcaaaaaacatg

Coding sequence (CDS) from alignment at scaffold_86:284948..288812+

>TCONS_00072843 ID=TCONS_00072843|Name=TCONS_00072843|organism=Clytia hemisphaerica|type=CDS|length=5274bp|location=Sequence derived from alignment at scaffold_86:284948..288812+ (Clytia hemisphaerica)
TTTTACGTGTCTTCTTTAAAATTCACATTTCTTTCCTCCCAAAGGTTGGT
GCCCATTCCTTTTACCAAACAAATCGAACAATtgaaaaaagacaaagaat
ATGAAATGGCTTTGGAATTATGTAAATTTCTGGATGATAAAGAACACAGT
CAAAAAATCATACCACATATCAAGAAGCTTCACGCTTTTGAGTTATTCTG
CTCAAAGAAATTTGAACAAGCCCTGAAGTTATTCAAGGAAATTGATGTTG
AACCGACCTATGTTATTGGCTTGTTCCCAGACCTCCTGCCAGAACAATAT
CGTAAACAGATTCAATATCCAGCTCAAGTACCCAAGATGACTTCTGGTGA
TTTACAAAAAGgttttCATTGTCTAACGGAATTCCTCACACGTATACGAA
ATAAAAGTTTATCTGAAGCTAATAAAGGCACAAACGCAACGCCCACTTCC
GATCAgcctcgtaaaatgcttttacAAATTATTGATACATCTCTGTTGAA
ATGCTACATGCAAACAAACGAAAACATGATTGCACCGTTATTGAGATTGA
AAGATAATCACTGTCATGTTGAAGAATGCGAACGGGTCCTTGCCAAAGCG
AAGAAGGTCAACGAGTTGGTGTTGTTGTATCAGAGCAAAGGGAATCACAA
GAAAGCCTTAGATTTGCTATTACGGCAATCAGATATTCCTACAGGTCCAT
TGAGTGGTCCAAAGAAGACGGTGGACTATTTACAGCATCTTGGTGCAGAC
CATGTCCAACTTGTCATCGATTATTCAAAATGggttctcaaaaaacatcc
agaagaagggttgaaaatttttactgcTGACACACCTGAGGTGGAGTCTT
TGCCACGTGATCGAGTGCTCTCCCACTTGGAAGCTATAACACCACAGTTA
GTGATCTCCTATCTTGAGCATATTATTAACGATTGGAAAGATAGTCATCC
TGAGTTCCATAATCGTTTGATTatcttttacaaagacaaaattCTCCCGC
TACTACGTGAGGAGCTTGTTGCTCCTAGCAACGATCCCGAAGGTGAACTG
GCTACCTTTCGAACCAAACTTCTCTTCTTCCTGGAAACATCAACCAATTA
CCAGCCTTATAAATTATTAAGATTCTTCCCGCAAGATGTCTTATATGAGG
AGAGAGCTCTGTTGTTAGGTCGTTCCGGGCGCCACGAGGAAGCGTTAGCG
ATATACATTTACGTGCTAAAGAACAACAAAATGGCGGAGAAGTACTGTAG
ACGTCAGTACGAAATGAACGAGGAAGAGAACAGAAATGTATATTTAAGTC
TAGTCAAAATGTATTTGAATCCCCAAGAATTACCATCACTTGGCTTGCCA
CAATCTACATTCACAGATGTCAAGTTAGAACCAAAAACCAAAGAAGCCTT
AGAGATCCTTAACAAGTATAATCAGAAAATTGATATTACACAAACATTGG
AGTTGTTACCTCAAACTACTGAAGTTAAGGATATCCGTATTTTCTTGATG
CGTGTTTTGAAAGAGAAGATTCAACAACGTAGAAGTAGTATGGTTTTAAA
GAGTTTATTCTATAGAGACCATTTACAAGTACACGAGCAACGTATTTATT
ACCAGAGCACCAAATGTGTGATTACCGAGGAAAGAGCATGCCGAGTATGT
CATAAACGTATCGGAACTAGTGCGTTTGCCATGTATCCGAACGGTGTTAT
TGTTCATTACTATTGTTGTAAAGATCGCCGGACATGCCCGGTCGATCCGG
ATGCCTAGTTTTACGTGTCTTCTTTAAAATTCACATTTCTTTCCTCCCAA
AGGTTGGTGCCCATTCCTTTTACCAAACAAATCGAACAATtgaaaaaaga
caaagaatATGAAATGGCTTTGGAATTATGTAAATTTCTGGATGATAAAG
AACACAGTCAAAAAATCATACCACATATCAAGAAGCTTCACGCTTTTGAG
TTATTCTGCTCAAAGAAATTTGAACAAGCCCTGAAGTTATTCAAGGAAAT
TGATGTTGAACCGACCTATGTTATTGGCTTGTTCCCAGACCTCCTGCCAG
AACAATATCGTAAACAGATTCAATATCCAGCTCAAGTACCCAAGATGACT
TCTGGTGATTTACAAAAAGgttttCATTGTCTAACGGAATTCCTCACACG
TATACGAAATAAAAGTTTATCTGAAGCTAATAAAGGCACAAACGCAACGC
CCACTTCCGATCAgcctcgtaaaatgcttttacAAATTATTGATACATCT
CTGTTGAAATGCTACATGCAAACAAACGAAAACATGATTGCACCGTTATT
GAGATTGAAAGATAATCACTGTCATGTTGAAGAATGCGAACGGGTCCTTG
CCAAAGCGAAGAAGGTCAACGAGTTGGTGTTGTTGTATCAGAGCAAAGGG
AATCACAAGAAAGCCTTAGATTTGCTATTACGGCAATCAGATATTCCTAC
AGGTCCATTGAGTGGTCCAAAGAAGACGGTGGACTATTTACAGCATCTTG
GTGCAGACCATGTCCAACTTGTCATCGATTATTCAAAATGggttctcaaa
aaacatccagaagaagggttgaaaatttttactgcTGACACACCTGAGGT
GGAGTCTTTGCCACGTGATCGAGTGCTCTCCCACTTGGAAGCTATAACAC
CACAGTTAGTGATCTCCTATCTTGAGCATATTATTAACGATTGGAAAGAT
AGTCATCCTGAGTTCCATAATCGTTTGATTatcttttacaaagacaaaat
tCTCCCGCTACTACGTGAGGAGCTTGTTGCTCCTAGCAACGATCCCGAAG
GTGAACTGGCTACCTTTCGAACCAAACTTCTCTTCTTCCTGGAAACATCA
ACCAATTACCAGCCTTATAAATTATTAAGATTCTTCCCGCAAGATGTCTT
ATATGAGGAGAGAGCTCTGTTGTTAGGTCGTTCCGGGCGCCACGAGGAAG
CGTTAGCGATATACATTTACGTGCTAAAGAACAACAAAATGGCGGAGAAG
TACTGTAGACGTCAGTACGAAATGAACGAGGAAGAGAACAGAAATGTATA
TTTAAGTCTAGTCAAAATGTATTTGAATCCCCAAGAATTACCATCACTTG
GCTTGCCACAATCTACATTCACAGATGTCAAGTTAGAACCAAAAACCAAA
GAAGCCTTAGAGATCCTTAACAAGTATAATCAGAAAATTGATATTACACA
AACATTGGAGTTGTTACCTCAAACTACTGAAGTTAAGGATATCCGTATTT
TCTTGATGCGTGTTTTGAAAGAGAAGATTCAACAACGTAGAAGTAGTATG
GTTTTAAAGAGTTTATTCTATAGAGACCATTTACAAGTACACGAGCAACG
TATTTATTACCAGAGCACCAAATGTGTGATTACCGAGGAAAGAGCATGCC
GAGTATGTCATAAACGTATCGGAACTAGTGCGTTTGCCATGTATCCGAAC
GGTGTTATTGTTCATTACTATTGTTGTAAAGATCGCCGGACATGCCCGGT
CGATCCGGATGCCTAGTTTTACGTGTCTTCTTTAAAATTCACATTTCTTT
CCTCCCAAAGGTTGGTGCCCATTCCTTTTACCAAACAAATCGAACAATtg
aaaaaagacaaagaatATGAAATGGCTTTGGAATTATGTAAATTTCTGGA
TGATAAAGAACACAGTCAAAAAATCATACCACATATCAAGAAGCTTCACG
CTTTTGAGTTATTCTGCTCAAAGAAATTTGAACAAGCCCTGAAGTTATTC
AAGGAAATTGATGTTGAACCGACCTATGTTATTGGCTTGTTCCCAGACCT
CCTGCCAGAACAATATCGTAAACAGATTCAATATCCAGCTCAAGTACCCA
AGATGACTTCTGGTGATTTACAAAAAGgttttCATTGTCTAACGGAATTC
CTCACACGTATACGAAATAAAAGTTTATCTGAAGCTAATAAAGGCACAAA
CGCAACGCCCACTTCCGATCAgcctcgtaaaatgcttttacAAATTATTG
ATACATCTCTGTTGAAATGCTACATGCAAACAAACGAAAACATGATTGCA
CCGTTATTGAGATTGAAAGATAATCACTGTCATGTTGAAGAATGCGAACG
GGTCCTTGCCAAAGCGAAGAAGGTCAACGAGTTGGTGTTGTTGTATCAGA
GCAAAGGGAATCACAAGAAAGCCTTAGATTTGCTATTACGGCAATCAGAT
ATTCCTACAGGTCCATTGAGTGGTCCAAAGAAGACGGTGGACTATTTACA
GCATCTTGGTGCAGACCATGTCCAACTTGTCATCGATTATTCAAAATGgg
ttctcaaaaaacatccagaagaagggttgaaaatttttactgcTGACACA
CCTGAGGTGGAGTCTTTGCCACGTGATCGAGTGCTCTCCCACTTGGAAGC
TATAACACCACAGTTAGTGATCTCCTATCTTGAGCATATTATTAACGATT
GGAAAGATAGTCATCCTGAGTTCCATAATCGTTTGATTatcttttacaaa
gacaaaattCTCCCGCTACTACGTGAGGAGCTTGTTGCTCCTAGCAACGA
TCCCGAAGGTGAACTGGCTACCTTTCGAACCAAACTTCTCTTCTTCCTGG
AAACATCAACCAATTACCAGCCTTATAAATTATTAAGATTCTTCCCGCAA
GATGTCTTATATGAGGAGAGAGCTCTGTTGTTAGGTCGTTCCGGGCGCCA
CGAGGAAGCGTTAGCGATATACATTTACGTGCTAAAGAACAACAAAATGG
CGGAGAAGTACTGTAGACGTCAGTACGAAATGAACGAGGAAGAGAACAGA
AATGTATATTTAAGTCTAGTCAAAATGTATTTGAATCCCCAAGAATTACC
ATCACTTGGCTTGCCACAATCTACATTCACAGATGTCAAGTTAGAACCAA
AAACCAAAGAAGCCTTAGAGATCCTTAACAAGTATAATCAGAAAATTGAT
ATTACACAAACATTGGAGTTGTTACCTCAAACTACTGAAGTTAAGGATAT
CCGTATTTTCTTGATGCGTGTTTTGAAAGAGAAGATTCAACAACGTAGAA
GTAGTATGGTTTTAAAGAGTTTATTCTATAGAGACCATTTACAAGTACAC
GAGCAACGTATTTATTACCAGAGCACCAAATGTGTGATTACCGAGGAAAG
AGCATGCCGAGTATGTCATAAACGTATCGGAACTAGTGCGTTTGCCATGT
ATCCGAACGGTGTTATTGTTCATTACTATTGTTGTAAAGATCGCCGGACA
TGCCCGGTCGATCCGGATGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045214XLOC_045214Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072843-proteinTCONS_00072843-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072843-exon-scaffold_86-1491911889:284948..285310TCONS_00072843-exon-scaffold_86-1491911889:284948..285310Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1510915933:284948..285310TCONS_00072843-exon-scaffold_86-1510915933:284948..285310Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1575043694:284948..285310TCONS_00072843-exon-scaffold_86-1575043694:284948..285310Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1491911889:285801..285859TCONS_00072843-exon-scaffold_86-1491911889:285801..285859Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1510915933:285801..285859TCONS_00072843-exon-scaffold_86-1510915933:285801..285859Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1575043694:285801..285859TCONS_00072843-exon-scaffold_86-1575043694:285801..285859Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1491911889:286435..288812TCONS_00072843-exon-scaffold_86-1491911889:286435..288812Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1510915933:286435..288812TCONS_00072843-exon-scaffold_86-1510915933:286435..288812Clytia hemisphaericaexon
TCONS_00072843-exon-scaffold_86-1575043694:286435..288812TCONS_00072843-exon-scaffold_86-1575043694:286435..288812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:284948..288812 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.07543	3.7524	1.83136	1.49907	23.5653	18.0935	17.6669	18.9062	8.80324	13.9688	10.7507	5.45786	7.52055	7.23632	8.20279	9.72179	9.98648	8.76569	5.70581	7.16001	6.84441	7.21935	16.0138	15.1571	9.43723	12.38	6.22436	5.14627	13.9961	14.4117
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000547Clathrin_H-chain/VPS_repeat
IPR011990TPR-like_helical_dom
IPR019453VPS39/TGF_beta_rcpt-assoc_2
IPR019452VPS39/TGF_beta_rcpt-assoc_1
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00072843 vs. Swiss-Prot (Human)
Match: VPS39 (Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2)

HSP 1 Score: 533.102 bits (1372), Expect = 3.322e-174
Identity = 284/594 (47.81%), Postives = 411/594 (69.19%), Query Frame = 3 
Query:    3 FYVSSLKFTFLSSQRLVPIPFTKQIEQLKKDKEYEMALELCKFLDDKE-HSQKIIPHIKKLHAFELFCSKKFEQALKLFKEIDVEPTYVIGLFPDLLPEQYRKQIQYPAQVPKMTSGDLQKGFHCLTEFLTRIRNKSLSEANKGTNATPTSD--------QPRKMLLQIIDTSLLKCYMQTNENMIAPLLRLKDNHCHVEECERVLAKAKKVNELVLLYQSKGNHKKALDLLLRQSDIPTGPLSGPKKTVDYLQHLGADHVQLVIDYSKWVLKKHPEEGLKIFTADTPEVESLPRDRVLSHLEAITPQLVISYLEHIINDWKDSHPEFHNRLIIFYKDKILPLLREELVA--------PSNDPEGELATFRTKLLFFLETSTNYQPYKLLRFFPQDVLYEERALLLGRSGRHEEALAIYIYVLKNNKMAEKYCRRQYEMNEEENRNVYLSLVKMYLNPQELPSLGLPQSTFTDVKLEPKT--KEALEILNKYNQKIDIXXXXXXXXXXXXVKDIRIFLMRVLKEKIQQRRSSMVLKSLFYRDHLQVHEQRIYYQSTKCVITEERACRVCHKRIGTSAFAMYPNGVIVHYYCCKD 1727
             YV+S  F +    RL+P+P   QI+QL +DK++E+AL+L +  DD +   Q+ I HIK L+AF LFC K+F++++++F ++  +PT+V+GL+PDLLP  YRKQ+QYP  +P ++  +L+K    L ++LT+ R++ + + N   + + TS         + +K LLQIIDT+LLKCY+ TN  ++APLLRL++NHCH+EE E VL KA K +EL++LY+ KG H+KAL +L+ QS     PL G ++TV YLQHLG +++ L+  YS WVL+  PE+GLKIFT D PEVESLPRDRVL  L      L I YLEHII+ W+++   FHN LI  Y +K+  L++E L++        P+ + EGEL  +R KLL FLE S+ Y P +L+  FP D L EERALLLGR G+HE+AL IY+++LK+ +MAE+YC + Y+ N++ N++VYLSL++MYL+P  +  LG  +       LEPK   + AL++L  ++ K+D T+ L LLP  T++ DIRIFL +VL+E  Q++R + VLK+L + + L+V E+RI +Q  KC+ITEE+ C VC K+IG SAFA YPNGV+VHY+C K+
Sbjct:  295 IYVASNHFVW----RLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLEL----LEPKANLQAALQVLELHHSKLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKE 880
The following BLAST results are available for this feature:
BLAST of TCONS_00072843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS393.322e-17447.81Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 P... [more]
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