TCONS_00072843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072843-protein
Unique NameTCONS_00072843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072843-protein ID=TCONS_00072843-protein|Name=TCONS_00072843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
FYVSSLKFTFLSSQRLVPIPFTKQIEQLKKDKEYEMALELCKFLDDKEHS
QKIIPHIKKLHAFELFCSKKFEQALKLFKEIDVEPTYVIGLFPDLLPEQY
RKQIQYPAQVPKMTSGDLQKGFHCLTEFLTRIRNKSLSEANKGTNATPTS
DQPRKMLLQIIDTSLLKCYMQTNENMIAPLLRLKDNHCHVEECERVLAKA
KKVNELVLLYQSKGNHKKALDLLLRQSDIPTGPLSGPKKTVDYLQHLGAD
HVQLVIDYSKWVLKKHPEEGLKIFTADTPEVESLPRDRVLSHLEAITPQL
VISYLEHIINDWKDSHPEFHNRLIIFYKDKILPLLREELVAPSNDPEGEL
ATFRTKLLFFLETSTNYQPYKLLRFFPQDVLYEERALLLGRSGRHEEALA
IYIYVLKNNKMAEKYCRRQYEMNEEENRNVYLSLVKMYLNPQELPSLGLP
QSTFTDVKLEPKTKEALEILNKYNQKIDITQTLELLPQTTEVKDIRIFLM
RVLKEKIQQRRSSMVLKSLFYRDHLQVHEQRIYYQSTKCVITEERACRVC
HKRIGTSAFAMYPNGVIVHYYCCKDRRTCPVDPDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045214XLOC_045214Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072843TCONS_00072843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000547Clathrin_H-chain/VPS_repeat
IPR011990TPR-like_helical_dom
IPR019453VPS39/TGF_beta_rcpt-assoc_2
IPR019452VPS39/TGF_beta_rcpt-assoc_1
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatPFAMPF00637Clathrincoord: 298..439
e-value: 2.0E-7
score: 30.8
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatPROSITEPS50236CHCRcoord: 274..443
score: 25.391
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 19..249
e-value: 0.01
score: 15.3
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 298..562
e-value: 1.2E-31
score: 109.7
IPR019453Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2PFAMPF10367Vps39_2coord: 467..574
e-value: 3.6E-33
score: 114.2
IPR019452Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1PFAMPF10366Vps39_1coord: 161..263
e-value: 1.3E-29
score: 102.5

Blast
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BLAST of TCONS_00072843-protein vs. Swiss-Prot (Human)
Match: VPS39 (Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2)

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 284/594 (47.81%), Postives = 411/594 (69.19%), Query Frame = 0 
Query:    1 FYVSSLKFTFLSSQRLVPIPFTKQIEQLKKDKEYEMALELCKFLDDKE-HSQKIIPHIKKLHAFELFCSKKFEQALKLFKEIDVEPTYVIGLFPDLLPEQYRKQIQYPAQVPKMTSGDLQKGFHCLTEFLTRIRNKSLSEANKGTNATPTSD--------QPRKMLLQIIDTSLLKCYMQTNENMIAPLLRLKDNHCHVEECERVLAKAKKVNELVLLYQSKGNHKKALDLLLRQSDIPTGPLSGPKKTVDYLQHLGADHVQLVIDYSKWVLKKHPEEGLKIFTADTPEVESLPRDRVLSHLEAITPQLVISYLEHIINDWKDSHPEFHNRLIIFYKDKILPLLREELVA--------PSNDPEGELATFRTKLLFFLETSTNYQPYKLLRFFPQDVLYEERALLLGRSGRHEEALAIYIYVLKNNKMAEKYCRRQYEMNEEENRNVYLSLVKMYLNPQELPSLGLPQSTFTDVKLEPKT--KEALEILNKYNQKIDITQTLELLPQTTEVKDIRIFLMRVLKEKIQQRRSSMVLKSLFYRDHLQVHEQRIYYQSTKCVITEERACRVCHKRIGTSAFAMYPNGVIVHYYCCKD 575
             YV+S  F +    RL+P+P   QI+QL +DK++E+AL+L +  DD +   Q+ I HIK L+AF LFC K+F++++++F ++  +PT+V+GL+PDLLP  YRKQ+QYP  +P ++  +L+K    L ++LT+ R++ + + N   + + TS         + +K LLQIIDT+LLKCY+ TN  ++APLLRL++NHCH+EE E VL KA K +EL++LY+ KG H+KAL +L+ QS     PL G ++TV YLQHLG +++ L+  YS WVL+  PE+GLKIFT D PEVESLPRDRVL  L      L I YLEHII+ W+++   FHN LI  Y +K+  L++E L++        P+ + EGEL  +R KLL FLE S+ Y P +L+  FP D L EERALLLGR G+HE+AL IY+++LK+ +MAE+YC + Y+ N++ N++VYLSL++MYL+P  +  LG  +       LEPK   + AL++L  ++ K+D T+ L LLP  T++ DIRIFL +VL+E  Q++R + VLK+L + + L+V E+RI +Q  KC+ITEE+ C VC K+IG SAFA YPNGV+VHY+C K+
Sbjct:  295 IYVASNHFVW----RLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLEL----LEPKANLQAALQVLELHHSKLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKE 880
The following BLAST results are available for this feature:
BLAST of TCONS_00072843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS390.000e+047.81Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 P... [more]
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