|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072840 ID=TCONS_00072840|Name=TCONS_00072840|organism=Clytia hemisphaerica|type=transcript|length=2885bp
aacCGGTAAAATTAATTCATTTAATATTTCCCTTTTCCAAACCTCTGAAT
GCACCcatgaaaattgaatagaaaCTAATAGACCGAATCTGAGAGATAGA
AATCTCGGTTTTACAAAGAATTGTAGCTATAAAAATAACTGTTTCGATAA
ATGTGTTCATCTAGAACATGCCATTGCCACAGCGACTCGTTTGGCGAACG
ATTCTTTCCTTGCAAGGTTCCACTGGTTGACAAAAAATTGTacataaaaa
gtgaaatgctCTTGCGTCATCAATTTTGCAGATGTTTTAATGCATTGCAA
GAAAGCATTAAATTGCTCACAGATGGATGTGTTCAAGCCATTAAAGCCAA
GTAATCGATTTGACTTGAACACATCAGAACACTTATGTCCATATCCATGG
AAAATGTCGTGGAAAAAACGTGTGTCCTGAAAAAAGCCACTTTCTCGGTT
TCGACAATATTCTTCAAGCGAGCAAGCAAAATCGTAAAAAATCTCATACG
GCGCCTGCTTCATGTACGCGTATAATGATGCCGCAGCATCTTTTCTGCCC
TCAGCATGGGGTATAATATGATACCCATAACAATGCCCGTGGGCTGGGCA
AAACCACAAAAACAAGTAAGAGGTCCCTTTTGAagtggggaaaatttttg
agcACACGTCACTGTCAGGCAAATCATCAAAGTtagattttttgtctttt
ttgtcttTATCGATATCAAACTTTCTGGTTTGTCTTATTTGGGAGCCGTC
GTGAAAGTAATACGCTCTACCATCTCTCGGTGGGTTGTATTTCTTAACCG
ATTCTGGCTCTTTCGGGGATATATCACAGCTGTTTAGTTCTTTCCTAAGG
GTAGTCagatacttgaagaattcaatTACGTATTTTTTAGGACAAGATCC
TTTGGAAAGCGATGTTGCAATAAGTAGCCAATCGCCTAGCTCTGGAAAGA
AAAATTTGGAAGATCGATGGAACTCTTCAACTACACGCCACAGATCGCCG
TTCTCCTCGATTATGTTTGCTGATGCCATCATATCATTCAACCGATCAAA
CTGGTCCAAGTACCGTCTAGGGATCAGGCAAGAACTCTCCATCCGTAGCC
TGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCAATTTTCGT
CCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGGACACTGTT
GGATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCACCACTTTATG
AGCGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAATCCTTATATCT
ATTCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTACTGGTCATTA
CCAGATCGACAAATTCCCAACCGATTTCATAACCACAGGCAACAGTCGAA
CTTGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCACGAAAACATCT
TTCTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAAGCCCCAACAG
TTGAATAAACTACCGTTTCTCCACGAGGCATGATATGACCGTCCGGATAT
TCATCGTTATACCAACCACTCTAACAAGAAAAAGATTATACCTTTTAAAG
ACGAAATCAATGATATTAAAAGGAACTTCATTGAACTTAAAGTAGACGAT
ACTAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAATATCGCCACC
CTTAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAGATGAAACGAA
AGTGAATAACCGGCGTTTTAACCCCGTTCAATATCtaatagaaattgaat
ttacCTCGCATCCACAGTTACCATCCTTAGATGGGATCAACTTTATCTCC
TGTCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGTCGCGGTAAAT
TTCGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCTTTGTCGTGGA
ATTTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCActaaaataga
aagaaaatgaTTGCCGGTTAACACTATTATAAACTTACAGTATAAAGCCC
CCATATGTCGGTATACACTCTAATCCGCAGGAAAATATATTAGTTAATTA
TTTCGTCAATATTCATAGACATAGacttatttttctgaaaacttcTCTGT
AAGAATAcgtttttgaatatttcataaaaaattaaatattttgtataagA
GATTTGTATCTATCGCTTACAAGTAGAATTTTTAGAAAtacctttattta
aaaataaacaaacctcCGAAGGGTCGTTTTCTGTTTCCAAATTATCATAT
TCCATATCCATGCCAAAGTCAATGTCTTCACTATCTTCCTCATCATCGTC
ATCTATTTCGTCGGCGAATTTCAGTGTATTGACATCGAAAGAACTCCTCA
GAAATTCCAAATGCGGACACAATTTTTCGGAAGTTTGAAACGTCTCTAAA
TACCTTTCTCTGGAAGGTTTGGATTGGCAAAATGAGTTGTGGCATGTGAT
GACTTTTcgcttcttctttttatttctataAATGGTAATTAGCTCTGCCT
CGTTTTCTTTTGTTAccactgaaaatttgaaaacgttACTTTTTGATGGT
AATTGAACAATCGGCTTCTTGATATATGATTCGGCCTTCGAAATCAACTC
TTCATTAAAGTAGCTTCTTTCTATGGAAGTCTCGTCATTCTCATTCGGCA
CAAACATCATGGGCTTGATTTTAAGAATATCTTTTGCAAAGCGACAGTGA
CAACAATTCATCCCTTCAAATTCCACCGGTCCGCTGATTTCCTCCTCGTT
TAAAGTTGAATTCAGTAAGCCGTACAAACTACAGGAGCATCTTATTATTG
GACCAGACGTTGTACCGATAATCGTGACATGAACG Run BLAST on NCBI transcript from alignment at scaffold_86:199406..204265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072840 ID=TCONS_00072840|Name=TCONS_00072840|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_86:199406..204265+ (Clytia hemisphaerica)
aacCGGTAAAATTAATTCATTTAATATTTCCCTTTTCCAAACCTCTGAAT
GCACCcatgaaaattgaatagaaaCTAATAGACCGAATCTGAGAGATAGA
AATCTCGGTTTTACAAAGAATTGTAGCTATAAAAATAACTGTTTCGATAA
ATGTGTTCATCTAGAACATGCCATTGCCACAGCGACTCGTTTGGCGAACG
ATTCTTTCCTTGCAAGGTTCCACTGGTTGACAAAAAATTGTacataaaaa
gtgaaatgctCTTGCGTCATCAATTTTGCAGATGTTTTAATGCATTGCAA
GAAAGCATTAAATTGCTCACAGATGGATGTGTTCAAGCCATTAAAGCCAA
GTAATCGATTTGACTTGAACACATCAGAACACTTATGTCCATATCCATGG
AAAATGTCGTGGAAAAAACGTGTGTCCTGAAAAAAGCCACTTTCTCGGTT
TCGACAATATTCTTCAAGCGAGCAAGCAAAATCGTAAAAAATCTCATACG
GCGCCTGCTTCATGTACGCGTATAATGATGCCGCAGCATCTTTTCTGCCC
TCAGCATGGGGTATAATATGATACCCATAACAATGCCCGTGGGCTGGGCA
AAACCACAAAAACAAGTAAGAGGTCCCTTTTGAagtggggaaaatttttg
agcACACGTCACTGTCAGGCAAATCATCAAAGTtagattttttgtctttt
ttgtcttTATCGATATCAAACTTTCTGGTTTGTCTTATTTGGGAGCCGTC
GTGAAAGTAATACGCTCTACCATCTCTCGGTGGGTTGTATTTCTTAACCG
ATTCTGGCTCTTTCGGGGATATATCACAGCTGTTTAGTTCTTTCCTAAGG
GTAGTCagatacttgaagaattcaatTACGTATTTTTTAGGACAAGATCC
TTTGGAAAGCGATGTTGCAATAAGTAGCCAATCGCCTAGCTCTGGAAAGA
AAAATTTGGAAGATCGATGGAACTCTTCAACTACACGCCACAGATCGCCG
TTCTCCTCGATTATGTTTGCTGATGCCATCATATCATTCAACCGATCAAA
CTGGTCCAAGTACCGTCTAGGGATCAGGTTGGTTAAGCTAGTATCCTTTG
TCAGAATAGCAAGAGATTTACTGAGTGCTACTTTTTCGAGATTCGACATA
CCAGGCTCGAATAATTTTTCTGTGAGTAGACGCACAACTGGGATACTTGA
ATCGGCTAATATTTCTTTGGTTTTACCCAATTCTTCTCCAGAAAGCTTAA
GTTTTCCACAAAAATGCTTCACTAACGAATGGAGAGCATCGTTGACAACT
TTTCTGTCCTTTTTACTGTTTGTGTTGTTGATAAAAGTTCTATCATACCT
CCTTTTATTTGTAGGCAAGAACTCTCCATCCGTAGCCTGTTCAATCGGTG
TCACATTGATTTGTTTGAAGGTTATTCCAATTTTCGTCCCATCGGCGGCT
AAGTATCTTGGATTCGGACCACAGCTTGGACACTGTTGGATAAAATCCAA
ATTCATAGCTGAAGCCCAACTGAACCACCACTTTATGAGCGTGTTCCGTG
ACAAGAACTCGCATTGCGACTTGTAATCCTTATATCTATTCTTCAGGACT
TTAACGAATCCAGAAAAGGTTTGTTTACTGGTCATTACCAGATCGACAAA
TTCCCAACCGATTTCATAACCACAGGCAACAGTCGAACTTGAACGAAACA
AGCTGTCTTCGGAGCCATCGTAACCACGAAAACATCTTTCTGACAAGCAT
TTTCGTTCAAACAAACGTGCCTTTGAAGCCCCAACAGTTGAATAAACTAC
CGTTTCTCCACGAGGCATGATATGACCGTCCGGATATTCATCGTTATACC
AACCACTCTAACAAGAAAAAGATTATACCTTTTAAAGACGAAATCAATGA
TATTAAAAGGAACTTCATTGAACTTAAAGTAGACGATACTAAACTTAGAG
TTGTAGATTTTCAGCATTTATATCCAATATCGCCACCCTTAAAGGGTTCC
TACTTCTTTGCCGACCGCTTTAAACAGATGAAACGAAAGTGAATAACCGG
CGTTTTAACCCCGTTCAATATCtaatagaaattgaatttacCTCGCATCC
ACAGTTACCATCCTTAGATGGGATCAACTTTATCTCCTGTCCAAGTAAAA
TTTGTATGGCTCTTTTTTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAA
TCATTGACACGCAACTGACTAGGGGCTTTGTCGTGGAATTTCCACTGACC
ATTTTCCTCGTCGAAAACCTTCTCCCActaaaatagaaagaaaatgaTTG
CCGGTTAACACTATTATAAACTTACAGTATAAAGCCCCCATATGTCGGTA
TACACTCTAATCCGCAGGAAAATATATTAGTTAATTATTTCGTCAATATT
CATAGACATAGacttatttttctgaaaacttcTCTGTAAGAATAcgtttt
tgaatatttcataaaaaattaaatattttgtataagAGATTTGTATCTAT
CGCTTACAAGTAGAATTTTTAGAAAtacctttatttaaaaataaacaaac
ctcCGAAGGGTCGTTTTCTGTTTCCAAATTATCATATTCCATATCCATGC
CAAAGTCAATGTCTTCACTATCTTCCTCATCATCGTCATCTATTTCGTCG
GCGAATTTCAGTGTATTGACATCGAAAGAACTCCTCAGAAATTCCAAATG
CGGACACAATTTTTCGGAAGTTTGAAACGTCTCTAAATACCTTTCTCTGG
AAGGTTTGGATTGGCAAAATGAGTTGTGGCATGTGATGACTTTTcgcttc
ttctttttatttctaNAACTTTTTCGAGATTCGACATACCAGGCTCGAAT
AATGTTTCTGTGAGTAGACGCACAACTGGGATACTTGAATCGGctaatat
ttcttttgttttacccAATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAA
AATGCTTCACTAACGAATGGAGAGCATCGTTGACAGTTTTTCTGTCCTTT
TTACTGTTTGTGTTGTTGATAAAAGTTCTATCGTACCTCCTTTTATTTGT
AGGCAAGAACTCTCCATCCGTAGCCTGTTCAATCGGTGTCACATTGATTT
GTTTGAAGGTTATTCCAATTTTCGTCCCATCGGCGGCTAAGTATCTTGGA
TTCGGACCACAGCTTGGACACTGTTGGATAAAATCCAAATTCATAGCTGA
AGCCCAACTGAACCACCACTTTATGAGCGTGTTCCGTGACAAGAACTCGC
ATTGCGACTTGTAATCCTTATATCTATTCTTCAGGACTTTAACGAATCCA
GAAAAGGTTTGTTTACTGGTCATTACCAGATCGACAAATTCCCAACCGAT
TTCATAACCACAGGCAACAGTCGAACTTGAACGAAACAAGCTGTCTTCGG
AGCCATCGTAACCACGAAAACATCTTTCTGACAAGCATTTTCGTTCAAAC
AAACGTGCCTTTGAAGCCCCAACAGTTGAATAAACTACCGTTTCTCCACG
AGGCATGATATGACCGTCCGGATATTCATCGTTATACCAACCACTCTAAC
AAGAAAAAGATTATACCTTTTAAAGACGAAATCAATGATATTAAAAGGAA
CTTCATTGAACTTAAAGTAGACGATACTAAACTTAGAGTTGTAGATTTTC
AGCATTTATATCCAATATCGCCACCCTTAAAGGGTTCCTACTTCTTTGCC
GACCGCTTTAAACAGATGAAACGAAAGTGAATAACCGGCGTTTTAACCCC
GTTCAATATCtaatagaaattgaatttacCTCGCATCCACAGTTACCATC
CTTAGATGGGATCAACTTTATCTCCTGTCCAAGTAAAATTTGTATGGCTC
TTTTTTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAATCATTGACACGC
AACTGACTAGGGGCTTTGTCGTGGAATTTCCACTGACCATTTTCCTCGTC
GAAAACCTTCTCCCActaaaatagaaagaaaatgaTTGCCGGTTAACACT
ATTATAAACTTACAGTATAAAGCCCCCATATGTCGGTATACACTCTAATC
CGCAGGAAAATATATTAGTTAATTATTTCGTCAATATTCATAGACATAGa
cttatttttctgaaaacttcTCTGTAAGAATAcgtttttgaatatttcat
aaaaaattaaatattttgtataagAGATTTGTATCTATCGCTTACAAGTA
GAATTTTTAGAAAtacctttatttaaaaataaacaaacctcCGAAGGGTC
GTTTTCTGTTTCCAAATTATCATATTCCATATCCATGCCAAAGTCAATGT
CTTCACTATCTTCCTCATCATCGTCATCTATTTCGTCGGCGAATTTCAGT
GTATTGACATCGAAAGAACTCCTCAGAAATTCCAAATGCGGACACAATTT
TTCGGAAGTTTGAAACGTCTCTAAATACCTTTCTCTGGAAGGTTTGGATT
GGCAAAATGAGTTGTGGCATGTGATGACTTTTcgcttcttctttttattt
ctataAATGGTAATTAGCTCTGCCTCGTTTTCTTTTGTTAccactgaaaa
tttgaaaacgttACTTTTTGATGGTAATTGAACAATCGGCTTCTTGATAT
ATGATTCGGCCTTCGAAATCAACTCTTCATTAAAGTAGCTTCTTTCTATG
GAAGTCTCGTCATTCTCATTCGGCACAAACATCATGGGCTTGATTTTAAG
AATATCTTTTGCAAAGCGACAGTGACAACAATTCATCCCTTCAAATTCCA
CCGGTCCGCTGATTTCCTCCTCGTTTAAAGTTGAATTCAGTAAGCCGTAC
AAACTACAGGAGCATCTTATTATTGGACCAGACGTTGTACCGATAATCGT
GACATGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072840-exon-scaffold_86-1491911889:199406..200482 | TCONS_00072840-exon-scaffold_86-1491911889:199406..200482 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1510915933:199406..200482 | TCONS_00072840-exon-scaffold_86-1510915933:199406..200482 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1575043694:199406..200482 | TCONS_00072840-exon-scaffold_86-1575043694:199406..200482 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1491911889:200770..200791 | TCONS_00072840-exon-scaffold_86-1491911889:200770..200791 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1510915933:200770..200791 | TCONS_00072840-exon-scaffold_86-1510915933:200770..200791 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1575043694:200770..200791 | TCONS_00072840-exon-scaffold_86-1575043694:200770..200791 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1491911889:202480..204265 | TCONS_00072840-exon-scaffold_86-1491911889:202480..204265 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1510915933:202480..204265 | TCONS_00072840-exon-scaffold_86-1510915933:202480..204265 | Clytia hemisphaerica | exon |
| TCONS_00072840-exon-scaffold_86-1575043694:202480..204265 | TCONS_00072840-exon-scaffold_86-1575043694:202480..204265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:199406..204265 + |
Blast
The following BLAST results are available for this feature:
|
