TCONS_00072838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072838
Unique NameTCONS_00072838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072838 ID=TCONS_00072838|Name=TCONS_00072838|organism=Clytia hemisphaerica|type=transcript|length=2176bp
aacCGGTAAAATTAATTCATTTAATATTTCCCTTTTCCAAACCTCTGAAT
GCACCcatgaaaattgaatagaaaCTAATAGACCGAATCTGAGAGATAGA
AATCTCGGTTTTACAAAGAATTGTAGCTATAAAAATAACTGTTTCGATAA
ATGTGTTCATCTAGAACATGCCATTGCCACAGCGACTCGTTTGGCGAACG
ATTCTTTCCTTGCAAGGTTCCACTGGTTGACAAAAAATTGTacataaaaa
gtgaaatgctCTTGCGTCATCAATTTTGCAGATGTTTTAATGCATTGCAA
GAAAGCATTAAATTGCTCACAGATGGATGTGTTCAAGCCATTAAAGCCAA
GTAATCGATTTGACTTGAACACATCAGAACACTTATGTCCATATCCATGG
AAAATGTCGTGGAAAAAACGTGTGTCCTGAAAAAAGCCACTTTCTCGGTT
TCGACAATATTCTTCAAGCGAGCAAGCAAAATCGTAAAAAATCTCATACG
GCGCCTGCTTCATGTACGCGTATAATGATGCCGCAGCATCTTTTCTGCCC
TCAGCATGGGGTATAATATGATACCCATAACAATGCCCGTGGGCTGGGCA
AAACCACAAAAACAAGTAAGAGGTCCCTTTTGAagtggggaaaatttttg
agcACACGTCACTGTCAGGCAAATCATCAAAGTtagattttttgtctttt
ttgtcttTATCGATATCAAACTTTCTGGTTTGTCTTATTTGGGAGCCGTC
GTGAAAGTAATACGCTCTACCATCTCTCGGTGGGTTGTATTTCTTAACCG
ATTCTGGCTCTTTCGGGGATATATCACAGCTGTTTAGTTCTTTCCTAAGG
GTAGTCagatacttgaagaattcaatTACGTATTTTTTAGGACAAGATCC
TTTGGAAAGCGATGTTGCAATAAGTAGCCAATCGCCTAGCTCTGGAAAGA
AAAATTTGGAAGATCGATGGAACTCTTCAACTACACGCCACAGATCGCCG
TTCTCCTCGATTATGTTTGCTGATGCCATCATATCATTCAACCGATCAAA
CTGGTCCAAGTACCGTCTAGGGATCAGGCAAGAACTCTCCATCCGTAGCC
TGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCAATTTTCGT
CCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGGACACTGTT
GGATAAAATCCAAATTCATAGCTGAAGGGCTTTGTCGTGGAATTTCCACT
GACCATTTTCCTCGTCGAAAACCTTCTCCCActaaaatagaaagaaaatg
aTTGCCGGTTAACACTATTATAAACTTACAGTATAAAGCCCCCATATGTC
GGTATACACTCTAATCCGCAGGAAAATATATTAGTTAATTATTTCGTCAA
TATTCATAGACATAGacttatttttctgaaaacttcTCTGTAAGAATAcg
tttttgaatatttcataaaaaattaaatattttgtataagAGATTTGTAT
CTATCGCTTACAAGTAGAATTTTTAGAAAtacctttatttaaaaataaac
aaacctcCGAAGGGTCGTTTTCTGTTTCCAAATTATCATATTCCATATCC
ATGCCAAAGTCAATGTCTTCACTATCTTCCTCATCATCGTCATCTATTTC
GTCGGCGAATTTCAGTGTATTGACATCGAAAGAACTCCTCAGAAATTCCA
AATGCGGACACAATTTTTCGGAAGTTTGAAACGTCTCTAAATACCTTTCT
CTGGAAGGTTTGGATTGGCAAAATGAGTTGTGGCATGTGATGACTTTTcg
cttcttctttttatttctataAATGGTAATTAGCTCTGCCTCGTTTTCTT
TTGTTAccactgaaaatttgaaaacgttACTTTTTGATGGTAATTGAACA
ATCGGCTTCTTGATATATGATTCGGCCTTCGAAATCAACTCTTCATTAAA
GTAGCTTCTTTCTATGGAAGTCTCGTCATTCTCATTCGGCACAAACATCA
TGGGCTTGATTTTAAGAATATCTTTTGCAAAGCGACAGTGACAACAATTC
ATCCCTTCAAATTCCACCGGTCCGCTGATTTCCTCCTCGTTTAAAGTTGA
ATTCAGTAAGCCGTACAAACTACAGGAGCATCTTATTATTGGACCAGACG
TTGTACCGATAATCGTGACATGAACG
Run BLAST on NCBI

transcript from alignment at scaffold_86:199406..204265+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072838 ID=TCONS_00072838|Name=TCONS_00072838|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_86:199406..204265+ (Clytia hemisphaerica)
aacCGGTAAAATTAATTCATTTAATATTTCCCTTTTCCAAACCTCTGAAT GCACCcatgaaaattgaatagaaaCTAATAGACCGAATCTGAGAGATAGA AATCTCGGTTTTACAAAGAATTGTAGCTATAAAAATAACTGTTTCGATAA ATGTGTTCATCTAGAACATGCCATTGCCACAGCGACTCGTTTGGCGAACG ATTCTTTCCTTGCAAGGTTCCACTGGTTGACAAAAAATTGTacataaaaa gtgaaatgctCTTGCGTCATCAATTTTGCAGATGTTTTAATGCATTGCAA GAAAGCATTAAATTGCTCACAGATGGATGTGTTCAAGCCATTAAAGCCAA GTAATCGATTTGACTTGAACACATCAGAACACTTATGTCCATATCCATGG AAAATGTCGTGGAAAAAACGTGTGTCCTGAAAAAAGCCACTTTCTCGGTT TCGACAATATTCTTCAAGCGAGCAAGCAAAATCGTAAAAAATCTCATACG GCGCCTGCTTCATGTACGCGTATAATGATGCCGCAGCATCTTTTCTGCCC TCAGCATGGGGTATAATATGATACCCATAACAATGCCCGTGGGCTGGGCA AAACCACAAAAACAAGTAAGAGGTCCCTTTTGAagtggggaaaatttttg agcACACGTCACTGTCAGGCAAATCATCAAAGTtagattttttgtctttt ttgtcttTATCGATATCAAACTTTCTGGTTTGTCTTATTTGGGAGCCGTC GTGAAAGTAATACGCTCTACCATCTCTCGGTGGGTTGTATTTCTTAACCG ATTCTGGCTCTTTCGGGGATATATCACAGCTGTTTAGTTCTTTCCTAAGG GTAGTCagatacttgaagaattcaatTACGTATTTTTTAGGACAAGATCC TTTGGAAAGCGATGTTGCAATAAGTAGCCAATCGCCTAGCTCTGGAAAGA AAAATTTGGAAGATCGATGGAACTCTTCAACTACACGCCACAGATCGCCG TTCTCCTCGATTATGTTTGCTGATGCCATCATATCATTCAACCGATCAAA CTGGTCCAAGTACCGTCTAGGGATCAGGTTGGTTAAGCTAGTATCCTTTG TCAGAATAGCAAGAGATTTACTGAGTGCTACTTTTTCGAGATTCGACATA CCAGGCTCGAATAATTTTTCTGTGAGTAGACGCACAACTGGGATACTTGA ATCGGCTAATATTTCTTTGGTTTTACCCAATTCTTCTCCAGAAAGCTTAA GTTTTCCACAAAAATGCTTCACTAACGAATGGAGAGCATCGTTGACAACT TTTCTGTCCTTTTTACTGTTTGTGTTGTTGATAAAAGTTCTATCATACCT CCTTTTATTTGTAGGCAAGAACTCTCCATCCGTAGCCTGTTCAATCGGTG TCACATTGATTTGTTTGAAGGTTATTCCAATTTTCGTCCCATCGGCGGCT AAGTATCTTGGATTCGGACCACAGCTTGGACACTGTTGGATAAAATCCAA ATTCATAGCTGAAGCCCAACTGAACCACCACTTTATGAGCGTGTTCCGTG ACAAGAACTCGCATTGCGACTTGTAATCCTTATATCTATTCTTCAGGACT TTAACGAATCCAGAAAAGGTTTGTTTACTGGTCATTACCAGATCGACAAA TTCCCAACCGATTTCATAACCACAGGCAACAGTCGAACTTGAACGAAACA AGCTGTCTTCGGAGCCATCGTAACCACGAAAACATCTTTCTGACAAGCAT TTTCGTTCAAACAAACGTGCCTTTGAAGCCCCAACAGTTGAATAAACTAC CGTTTCTCCACGAGGCATGATATGACCGTCCGGATATTCATCGTTATACC AACCACTCTAACAAGAAAAAGATTATACCTTTTAAAGACGAAATCAATGA TATTAAAAGGAACTTCATTGAACTTAAAGTAGACGATACTAAACTTAGAG TTGTAGATTTTCAGCATTTATATCCAATATCGCCACCCTTAAAGGGTTCC TACTTCTTTGCCGACCGCTTTAAACAGATGAAACGAAAGTGAATAACCGG CGTTTTAACCCCGTTCAATATCtaatagaaattgaatttacCTCGCATCC ACAGTTACCATCCTTAGATGGGATCAACTTTATCTCCTGTCCAAGTAAAA TTTGTATGGCTCTTTTTTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAA TCATTGACACGCAACTGACTAGGGGCTTTGTCGTGGAATTTCCACTGACC ATTTTCCTCGTCGAAAACCTTCTCCCActaaaatagaaagaaaatgaTTG CCGGTTAACACTATTATAAACTTACAGTATAAAGCCCCCATATGTCGGTA TACACTCTAATCCGCAGGAAAATATATTAGTTAATTATTTCGTCAATATT CATAGACATAGacttatttttctgaaaacttcTCTGTAAGAATAcgtttt tgaatatttcataaaaaattaaatattttgtataagAGATTTGTATCTAT CGCTTACAAGTAGAATTTTTAGAAAtacctttatttaaaaataaacaaac ctcCGAAGGGTCGTTTTCTGTTTCCAAATTATCATATTCCATATCCATGC CAAAGTCAATGTCTTCACTATCTTCCTCATCATCGTCATCTATTTCGTCG GCGAATTTCAGTGTATTGACATCGAAAGAACTCCTCAGAAATTCCAAATG CGGACACAATTTTTCGGAAGTTTGAAACGTCTCTAAATACCTTTCTCTGG AAGGTTTGGATTGGCAAAATGAGTTGTGGCATGTGATGACTTTTcgcttc ttctttttatttctaNAACTTTTTCGAGATTCGACATACCAGGCTCGAAT AATGTTTCTGTGAGTAGACGCACAACTGGGATACTTGAATCGGctaatat ttcttttgttttacccAATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAA AATGCTTCACTAACGAATGGAGAGCATCGTTGACAGTTTTTCTGTCCTTT TTACTGTTTGTGTTGTTGATAAAAGTTCTATCGTACCTCCTTTTATTTGT AGGCAAGAACTCTCCATCCGTAGCCTGTTCAATCGGTGTCACATTGATTT GTTTGAAGGTTATTCCAATTTTCGTCCCATCGGCGGCTAAGTATCTTGGA TTCGGACCACAGCTTGGACACTGTTGGATAAAATCCAAATTCATAGCTGA AGCCCAACTGAACCACCACTTTATGAGCGTGTTCCGTGACAAGAACTCGC ATTGCGACTTGTAATCCTTATATCTATTCTTCAGGACTTTAACGAATCCA GAAAAGGTTTGTTTACTGGTCATTACCAGATCGACAAATTCCCAACCGAT TTCATAACCACAGGCAACAGTCGAACTTGAACGAAACAAGCTGTCTTCGG AGCCATCGTAACCACGAAAACATCTTTCTGACAAGCATTTTCGTTCAAAC AAACGTGCCTTTGAAGCCCCAACAGTTGAATAAACTACCGTTTCTCCACG AGGCATGATATGACCGTCCGGATATTCATCGTTATACCAACCACTCTAAC AAGAAAAAGATTATACCTTTTAAAGACGAAATCAATGATATTAAAAGGAA CTTCATTGAACTTAAAGTAGACGATACTAAACTTAGAGTTGTAGATTTTC AGCATTTATATCCAATATCGCCACCCTTAAAGGGTTCCTACTTCTTTGCC GACCGCTTTAAACAGATGAAACGAAAGTGAATAACCGGCGTTTTAACCCC GTTCAATATCtaatagaaattgaatttacCTCGCATCCACAGTTACCATC CTTAGATGGGATCAACTTTATCTCCTGTCCAAGTAAAATTTGTATGGCTC TTTTTTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAATCATTGACACGC AACTGACTAGGGGCTTTGTCGTGGAATTTCCACTGACCATTTTCCTCGTC GAAAACCTTCTCCCActaaaatagaaagaaaatgaTTGCCGGTTAACACT ATTATAAACTTACAGTATAAAGCCCCCATATGTCGGTATACACTCTAATC CGCAGGAAAATATATTAGTTAATTATTTCGTCAATATTCATAGACATAGa cttatttttctgaaaacttcTCTGTAAGAATAcgtttttgaatatttcat aaaaaattaaatattttgtataagAGATTTGTATCTATCGCTTACAAGTA GAATTTTTAGAAAtacctttatttaaaaataaacaaacctcCGAAGGGTC GTTTTCTGTTTCCAAATTATCATATTCCATATCCATGCCAAAGTCAATGT CTTCACTATCTTCCTCATCATCGTCATCTATTTCGTCGGCGAATTTCAGT GTATTGACATCGAAAGAACTCCTCAGAAATTCCAAATGCGGACACAATTT TTCGGAAGTTTGAAACGTCTCTAAATACCTTTCTCTGGAAGGTTTGGATT GGCAAAATGAGTTGTGGCATGTGATGACTTTTcgcttcttctttttattt ctataAATGGTAATTAGCTCTGCCTCGTTTTCTTTTGTTAccactgaaaa tttgaaaacgttACTTTTTGATGGTAATTGAACAATCGGCTTCTTGATAT ATGATTCGGCCTTCGAAATCAACTCTTCATTAAAGTAGCTTCTTTCTATG GAAGTCTCGTCATTCTCATTCGGCACAAACATCATGGGCTTGATTTTAAG AATATCTTTTGCAAAGCGACAGTGACAACAATTCATCCCTTCAAATTCCA CCGGTCCGCTGATTTCCTCCTCGTTTAAAGTTGAATTCAGTAAGCCGTAC AAACTACAGGAGCATCTTATTATTGGACCAGACGTTGTACCGATAATCGT GACATGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045211XLOC_045211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072838-exon-scaffold_86-1491911889:199406..200482TCONS_00072838-exon-scaffold_86-1491911889:199406..200482Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1510915933:199406..200482TCONS_00072838-exon-scaffold_86-1510915933:199406..200482Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1575043694:199406..200482TCONS_00072838-exon-scaffold_86-1575043694:199406..200482Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1491911889:200770..200791TCONS_00072838-exon-scaffold_86-1491911889:200770..200791Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1510915933:200770..200791TCONS_00072838-exon-scaffold_86-1510915933:200770..200791Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1575043694:200770..200791TCONS_00072838-exon-scaffold_86-1575043694:200770..200791Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1491911889:202480..202606TCONS_00072838-exon-scaffold_86-1491911889:202480..202606Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1510915933:202480..202606TCONS_00072838-exon-scaffold_86-1510915933:202480..202606Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1575043694:202480..202606TCONS_00072838-exon-scaffold_86-1575043694:202480..202606Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1491911889:203316..204265TCONS_00072838-exon-scaffold_86-1491911889:203316..204265Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1510915933:203316..204265TCONS_00072838-exon-scaffold_86-1510915933:203316..204265Clytia hemisphaericaexon
TCONS_00072838-exon-scaffold_86-1575043694:203316..204265TCONS_00072838-exon-scaffold_86-1575043694:203316..204265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:199406..204265 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133487 0 0.597311 0.533041 0 0 0.105106 0 0 0 0 0 0 0 0 0 0 0 0 0.0864679 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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