TCONS_00072836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072836
Unique NameTCONS_00072836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072836 ID=TCONS_00072836|Name=TCONS_00072836|organism=Clytia hemisphaerica|type=transcript|length=2542bp
aatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATATTT
CCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTAAT
AGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGCTA
TAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGCCA
CAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGTTG
ACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTTGC
AGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGATG
TGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAGAA
CACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCCTG
AAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGCAA
AATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATGAT
GCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCATA
ACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCCTT
TTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCATCA
AAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTGGT
TTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCTCG
GTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCACAG
CTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatTAC
GTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAGCC
AATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTTCA
ACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCCAT
CATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAGGT
TGGTTAAGCTAGTATCCTTTGTCAGAATAGCAAGAGATTTACTGAGTGCT
ACTTTTTCGAGATTCGACATACCAGGCTCGAATAATTTTTCTGTGAGTAG
ACGCACAACTGGGATACTTGAATCGGCTAATATTTCTTTGGTTTTACCCA
ATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAAAATGCTTCACTAACGAA
TGGAGAGCATCGTTGACAACTTTTCTGTCCTTTTTACTGTTTGTGTTGTT
GATAAAAGTTCTATCATACCTCCTTTTATTTGTAGGCAAGAACTCTCCAT
CCGTAGCCTGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCA
ATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGG
ACACTGTTGGATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCACC
ACTTTATGAGCGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAATCC
TTATATCTATTCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTACT
GGTCATTACCAGATCGACAAATTCCCAACCGATTTCATAACCACAGGCAA
CAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCACGA
AAACATCTTTCTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAAGC
CCCAACAGTTGAATAAACTACCGTTTCTCCACGAGGCATGATATGACCGT
CCGGATATTCATCGTTATACCAACCACTCTAACAAGAAAAAGATTATACC
TTTTAAAGACGAAATCAATGATATTAAAAGGAACTTCATTGAACTTAAAG
TAGACGATACTAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAATA
TCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAGAT
GAAACGAAAGTGAATAACCGGCGTTTTAACCCCGTTCAATATCtaataga
aattgaatttacCTCGCATCCACAGTTACCATCCTTAGATGGGATCAACT
TTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGTCG
CGGTAAATTTCGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCTTT
GTCGTGGAATTTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCAct
aaaatagaaagaaaatgaTTGCCGGTTAACACTATTATAAACTTACAGTA
TAAAGCCCCCATATGTCGGTATACACTCTAATCCGCAGGAAAATATATTA
GTTAATTATTTCGTCAATATTCATAGACATAGacttatttttctgaaaac
ttcTCTGTAAGAATAcgtttttgaatatttcataaaaaattaaatatttt
gtataagAGATTTGTATCTATCGCTTACAAGTAGAATTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_86:199385..201926+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072836 ID=TCONS_00072836|Name=TCONS_00072836|organism=Clytia hemisphaerica|type=transcript|length=2542bp|location=Sequence derived from alignment at scaffold_86:199385..201926+ (Clytia hemisphaerica)
aatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATATTT
CCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTAAT
AGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGCTA
TAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGCCA
CAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGTTG
ACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTTGC
AGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGATG
TGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAGAA
CACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCCTG
AAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGCAA
AATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATGAT
GCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCATA
ACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCCTT
TTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCATCA
AAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTGGT
TTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCTCG
GTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCACAG
CTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatTAC
GTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAGCC
AATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTTCA
ACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCCAT
CATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAGGT
TGGTTAAGCTAGTATCCTTTGTCAGAATAGCAAGAGATTTACTGAGTGCT
ACTTTTTCGAGATTCGACATACCAGGCTCGAATAATTTTTCTGTGAGTAG
ACGCACAACTGGGATACTTGAATCGGCTAATATTTCTTTGGTTTTACCCA
ATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAAAATGCTTCACTAACGAA
TGGAGAGCATCGTTGACAACTTTTCTGTCCTTTTTACTGTTTGTGTTGTT
GATAAAAGTTCTATCATACCTCCTTTTATTTGTAGGCAAGAACTCTCCAT
CCGTAGCCTGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCA
ATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGG
ACACTGTTGGATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCACC
ACTTTATGAGCGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAATCC
TTATATCTATTCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTACT
GGTCATTACCAGATCGACAAATTCCCAACCGATTTCATAACCACAGGCAA
CAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCACGA
AAACATCTTTCTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAAGC
CCCAACAGTTGAATAAACTACCGTTTCTCCACGAGGCATGATATGACCGT
CCGGATATTCATCGTTATACCAACCACTCTAACAAGAAAAAGATTATACC
TTTTAAAGACGAAATCAATGATATTAAAAGGAACTTCATTGAACTTAAAG
TAGACGATACTAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAATA
TCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAGAT
GAAACGAAAGTGAATAACCGGCGTTTTAACCCCGTTCAATATCtaataga
aattgaatttacCTCGCATCCACAGTTACCATCCTTAGATGGGATCAACT
TTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGTCG
CGGTAAATTTCGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCTTT
GTCGTGGAATTTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCAct
aaaatagaaagaaaatgaTTGCCGGTTAACACTATTATAAACTTACAGTA
TAAAGCCCCCATATGTCGGTATACACTCTAATCCGCAGGAAAATATATTA
GTTAATTATTTCGTCAATATTCATAGACATAGacttatttttctgaaaac
ttcTCTGTAAGAATAcgtttttgaatatttcataaaaaattaaatatttt
gtataagAGATTTGTATCTATCGCTTACAAGTAGAATTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045211XLOC_045211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072836-exon-scaffold_86-1491911889:199385..201926TCONS_00072836-exon-scaffold_86-1491911889:199385..201926Clytia hemisphaericaexon
TCONS_00072836-exon-scaffold_86-1510915933:199385..201926TCONS_00072836-exon-scaffold_86-1510915933:199385..201926Clytia hemisphaericaexon
TCONS_00072836-exon-scaffold_86-1575043694:199385..201926TCONS_00072836-exon-scaffold_86-1575043694:199385..201926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:199385..201926 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444183	0.407762	0.405805	0.19352	5.82546	4.50483	6.33933	6.97688	3.78606	3.60027	3.80474	2.51445	2.6537	2.51585	0.833484	1.37417	1.0761	1.4196	0.866861	1.45151	1.45335	3.37232	1.02274	0.850894	0.932842	1.63163	5.56649	3.89476	4.00535	3.32685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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