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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072834 ID=TCONS_00072834|Name=TCONS_00072834|organism=Clytia hemisphaerica|type=transcript|length=2908bp
tgaatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATAT
TTCCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTA
ATAGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGC
TATAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGC
CACAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGT
TGACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTT
GCAGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGA
TGTGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAG
AACACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCC
TGAAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGC
AAAATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATG
ATGCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCA
TAACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCC
TTTTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCAT
CAAAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTG
GTTTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCT
CGGTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCAC
AGCTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatT
ACGTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAG
CCAATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTT
CAACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCC
ATCATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAG
GCAAGAACTCTCCATCCGTAGCCTGTTCAATCGGTGTCACATTGATTTGT
TTGAAGGTTATTCCAATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATT
CGGACCACAGCTTGGACACTGTTGGATAAAATCCAAATTCATAGCTGAAG
CCCAACTGAACCACCACTTTATGAGCGTGTTCCGTGACAAGAACTCGCAT
TGCGACTTGTAATCCTTATATCTATTCTTCAGGACTTTAACGAATCCAGA
AAAGGTTTGTTTACTGGTCATTACCAGATCGACAAATTCCCAACCGATTT
CATAACCACAGGCAACAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAG
CCATCGTAACCACGAAAACATCTTTCTGACAAGCATTTTCGTTCAAACAA
ACGTGCCTTTGAAGCCCCAACAGTTGAATAAACTACCGTTTCTCCACGAG
GCATGATATGACCGTCCGGATATTCATCGTTATACCAACCACTCTAACAA
GAAAAAGATTATACCTTTTAAAGACGAAATCAATGATATTAAAAGGAACT
TCATTGAACTTAAAGTAGACGATACTAAACTTAGAGTTGTAGATTTTCAG
CATTTATATCCAATATCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGA
CCGCTTTAAACAGATGAAACGAAAGTGAATAACCGGCGTTTTAACCCCGT
TCAATATCtaatagaaattgaatttacCTCGCATCCACAGTTACCATCCT
TAGATGGGATCAACTTTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTT
TTTTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAATCATTGACACGCAA
CTGACTAGGGGCTTTGTCGTGGAATTTCCACTGACCATTTTCCTCGTCGA
AAACCTTCTCCCActaaaatagaaagaaaatgaTTGCCGGTTAACACTAT
TATAAACTTACAGTATAAAGCCCCCATATGTCGGTATACACTCTAATCCG
CAGGAAAATATATTAGTTAATTATTTCGTCAATATTCATAGACATAGact
tatttttctgaaaacttcTCTGTAAGAATAcgtttttgaatatttcataa
aaaattaaatattttgtataagAGATTTGTATCTATCGCTTACAAGTAGA
ATTTTTAGAAAtacctttatttaaaaataaacaaacctcCGAAGGGTCGT
TTTCTGTTTCCAAATTATCATATTCCATATCCATGCCAAAGTCAATGTCT
TCACTATCTTCCTCATCATCGTCATCTATTTCGTCGGCGAATTTCAGTGT
ATTGACATCGAAAGAACTCCTCAGAAATTCCAAATGCGGACACAATTTTT
CGGAAGTTTGAAACGTCTCTAAATACCTTTCTCTGGAAGGTTTGGATTGG
CAAAATGAGTTGTGGCATGTGATGACTTTTcgcttcttctttttatttct
ataAATGGTAATTAGCTCTGCCTCGTTTTCTTTTGTTAccactgaaaatt
tgaaaacgttACTTTTTGATGGTAATTGAACAATCGGCTTCTTGATATAT
GATTCGGCCTTCGAAATCAACTCTTCATTAAAGTAGCTTCTTTCTATGGA
AGTCTCGTCATTCTCATTCGGCACAAACATCATGGGCTTGATTTTAAGAA
TATCTTTTGCAAAGCGACAGTGACAACAATTCATCCCTTCAAATTCCACC
GGTCCGCTGATTTCCTCCTCGTTTAAAGTTGAATTCAGTAAGCCGTACAA
ACTACAGGAGCATCTTATTATTGGACCAGACGTTGTACCGATAATCGTGA
CATGAACG Run BLAST on NCBI transcript from alignment at scaffold_86:199383..204265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072834 ID=TCONS_00072834|Name=TCONS_00072834|organism=Clytia hemisphaerica|type=transcript|length=4883bp|location=Sequence derived from alignment at scaffold_86:199383..204265+ (Clytia hemisphaerica)
tgaatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATAT
TTCCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTA
ATAGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGC
TATAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGC
CACAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGT
TGACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTT
GCAGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGA
TGTGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAG
AACACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCC
TGAAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGC
AAAATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATG
ATGCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCA
TAACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCC
TTTTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCAT
CAAAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTG
GTTTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCT
CGGTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCAC
AGCTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatT
ACGTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAG
CCAATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTT
CAACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCC
ATCATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAG
GTTGGTTAAGCTAGTATCCTTTGTCAGAATAGCAAGAGATTTACTGAGTG
CTACTTTTTCGAGATTCGACATACCAGGCTCGAATAATTTTTCTGTGAGT
AGACGCACAACTGGGATACTTGAATCGGCTAATATTTCTTTGGTTTTACC
CAATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAAAATGCTTCACTAACG
AATGGAGAGCATCGTTGACAACTTTTCTGTCCTTTTTACTGTTTGTGTTG
TTGATAAAAGTTCTATCATACCTCCTTTTATTTGTAGGCAAGAACTCTCC
ATCCGTAGCCTGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTC
CAATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTT
GGACACTGTTGGATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCA
CCACTTTATGAGCGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAAT
CCTTATATCTATTCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTA
CTGGTCATTACCAGATCGACAAATTCCCAACCGATTTCATAACCACAGGC
AACAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCAC
GAAAACATCTTTCTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAA
GCCCCAACAGTTGAATAAACTACCGTTTCTCCACGAGGCATGATATGACC
GTCCGGATATTCATCGTTATACCAACCACTCTAACAAGAAAAAGATTATA
CCTTTTAAAGACGAAATCAATGATATTAAAAGGAACTTCATTGAACTTAA
AGTAGACGATACTAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAA
TATCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAG
ATGAAACGAAAGTGAATAACCGGCGTTTTAACCCCGTTCAATATCtaata
gaaattgaatttacCTCGCATCCACAGTTACCATCCTTAGATGGGATCAA
CTTTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGT
CGCGGTAAATTTCGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCT
TTGTCGTGGAATTTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCA
ctaaaatagaaagaaaatgaTTGCCGGTTAACACTATTATAAACTTACAG
TATAAAGCCCCCATATGTCGGTATACACTCTAATCCGCAGGAAAATATAT
TAGTTAATTATTTCGTCAATATTCATAGACATAGacttatttttctgaaa
acttcTCTGTAAGAATAcgtttttgaatatttcataaaaaattaaatatt
ttgtataagAGATTTGTATCTATCGCTTACAAGTAGAATTTTTAGAAAta
cctttatttaaaaataaacaaacctcCGAAGGGTCGTTTTCTGTTTCCAA
ATTATCATATTCCATATCCATGCCAAAGTCAATGTCTTCACTATCTTCCT
CATCATCGTCATCTATTTCGTCGGCGAATTTCAGTGTATTGACATCGAAA
GAACTCCTCAGAAATTCCAAATGCGGACACAATTTTTCGGAAGTTTGAAA
CGTCTCTAAATACCTTTCTCTGGAAGGTTTGGATTGGCAAAATGAGTTGT
GGCATGTGATGACTTTTcgcttcttctttttatttctaNAACTTTTTCGA
GATTCGACATACCAGGCTCGAATAATGTTTCTGTGAGTAGACGCACAACT
GGGATACTTGAATCGGctaatatttcttttgttttacccAATTCTTCTCC
AGAAAGCTTAAGTTTTCCACAAAAATGCTTCACTAACGAATGGAGAGCAT
CGTTGACAGTTTTTCTGTCCTTTTTACTGTTTGTGTTGTTGATAAAAGTT
CTATCGTACCTCCTTTTATTTGTAGGCAAGAACTCTCCATCCGTAGCCTG
TTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCAATTTTCGTCC
CATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGGACACTGTTGG
ATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCACCACTTTATGAG
CGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAATCCTTATATCTAT
TCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTACTGGTCATTACC
AGATCGACAAATTCCCAACCGATTTCATAACCACAGGCAACAGTCGAACT
TGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCACGAAAACATCTTT
CTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAAGCCCCAACAGTT
GAATAAACTACCGTTTCTCCACGAGGCATGATATGACCGTCCGGATATTC
ATCGTTATACCAACCACTCTAACAAGAAAAAGATTATACCTTTTAAAGAC
GAAATCAATGATATTAAAAGGAACTTCATTGAACTTAAAGTAGACGATAC
TAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAATATCGCCACCCT
TAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAGATGAAACGAAAG
TGAATAACCGGCGTTTTAACCCCGTTCAATATCtaatagaaattgaattt
acCTCGCATCCACAGTTACCATCCTTAGATGGGATCAACTTTATCTCCTG
TCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGTCGCGGTAAATTT
CGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCTTTGTCGTGGAAT
TTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCActaaaatagaaa
gaaaatgaTTGCCGGTTAACACTATTATAAACTTACAGTATAAAGCCCCC
ATATGTCGGTATACACTCTAATCCGCAGGAAAATATATTAGTTAATTATT
TCGTCAATATTCATAGACATAGacttatttttctgaaaacttcTCTGTAA
GAATAcgtttttgaatatttcataaaaaattaaatattttgtataagAGA
TTTGTATCTATCGCTTACAAGTAGAATTTTTAGAAAtacctttatttaaa
aataaacaaacctcCGAAGGGTCGTTTTCTGTTTCCAAATTATCATATTC
CATATCCATGCCAAAGTCAATGTCTTCACTATCTTCCTCATCATCGTCAT
CTATTTCGTCGGCGAATTTCAGTGTATTGACATCGAAAGAACTCCTCAGA
AATTCCAAATGCGGACACAATTTTTCGGAAGTTTGAAACGTCTCTAAATA
CCTTTCTCTGGAAGGTTTGGATTGGCAAAATGAGTTGTGGCATGTGATGA
CTTTTcgcttcttctttttatttctataAATGGTAATTAGCTCTGCCTCG
TTTTCTTTTGTTAccactgaaaatttgaaaacgttACTTTTTGATGGTAA
TTGAACAATCGGCTTCTTGATATATGATTCGGCCTTCGAAATCAACTCTT
CATTAAAGTAGCTTCTTTCTATGGAAGTCTCGTCATTCTCATTCGGCACA
AACATCATGGGCTTGATTTTAAGAATATCTTTTGCAAAGCGACAGTGACA
ACAATTCATCCCTTCAAATTCCACCGGTCCGCTGATTTCCTCCTCGTTTA
AAGTTGAATTCAGTAAGCCGTACAAACTACAGGAGCATCTTATTATTGGA
CCAGACGTTGTACCGATAATCGTGACATGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072834-exon-scaffold_86-1491911889:199383..200482 | TCONS_00072834-exon-scaffold_86-1491911889:199383..200482 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1510915933:199383..200482 | TCONS_00072834-exon-scaffold_86-1510915933:199383..200482 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1575043694:199383..200482 | TCONS_00072834-exon-scaffold_86-1575043694:199383..200482 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1491911889:200770..200825 | TCONS_00072834-exon-scaffold_86-1491911889:200770..200825 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1510915933:200770..200825 | TCONS_00072834-exon-scaffold_86-1510915933:200770..200825 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1575043694:200770..200825 | TCONS_00072834-exon-scaffold_86-1575043694:200770..200825 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1491911889:202514..204265 | TCONS_00072834-exon-scaffold_86-1491911889:202514..204265 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1510915933:202514..204265 | TCONS_00072834-exon-scaffold_86-1510915933:202514..204265 | Clytia hemisphaerica | exon |
| TCONS_00072834-exon-scaffold_86-1575043694:202514..204265 | TCONS_00072834-exon-scaffold_86-1575043694:202514..204265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:199383..204265 + |
Blast
The following BLAST results are available for this feature:
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