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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072832 ID=TCONS_00072832|Name=TCONS_00072832|organism=Clytia hemisphaerica|type=transcript|length=2404bp
atagaggtatgaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAG
CGTAATGAGCCATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGC
TTATTATGTTCAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCT
TGGATCACCTTTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAG
CTACGAGAAGTAGGAATCACACACATTATCAACACAGTCGATGAAGGGGA
AAAAAATACCAGTACGAAGAAAGATTTTTACGGACCAGATATCGAATATA
TGGGATTTAACTCGCAAGATGATGAAAATTACGAAATTATGAAACGCGTC
AGGCGGAAAGTGTTTAATTCACTGCATGGCGGGTATCAATAGAAGTGGTT
GCCTAGCAACTGCGCATGTTATGTTAGATCAAAATATTGGACCAATAACA
GCCGCACGATTCGTTTATGAGAAAAGAGGTGTGCTGCTTTCAAATAATGG
GTTTATAGAACGTTTAGTTAAATTTGCTGTCGATCGTGATTTGCTTTATT
TAGATAAAGACAATATACTTCCTCTGTATGGGAACCACTGAATATTACAA
CATCGTTTAAACGTAAAAGAATGGTAGTAGAATCGAGGTTATATCCAGCA
ATTGTATGGAAATATTTAGTTTCCTAAACCACAAAATTCGTTGCATAGAG
AAACTGTAATTGCATTAcatttggacctaccccggtggagctgctataaa
tttacaaattttcagaTGCCTAAGGccaaaaaggaaatttgaattttacg
aGCTAGAAAATCAGACGAATTTATTTATACCGTTGCGGACGCAGTCTAGT
GAAAGGGAAACGTAAGACGGAGTCAGACTGAGTCCTGATAAAACGAATGT
ATAttcatgctttttttataagaatagtgtactttggatgagggtcaagt
attcttaagaaagtgccaaaattgagggtgaaatattcttaacatatata
cttgacttttttacaaacatgagaaatgatcaatttgagagttttggact
tttgagtgaacatttgggttaaaattacattccttcctcaaaactttatc
tctaacaaaggaagtagttttttctgttaaccaaatacaaattgactgta
ttcttatcaaactCTGTGAAATGCAAtgcaaaatattcttataaagcgTG
TTTACAGACATTTTGAGTTATAAATTGGTTTTAAGAATCGTACGTTTCCT
TTAATGATCAGTTTCCTTTGTGTGATTTTCCTCGACTTCCTCTTCGTGGA
AACTTGTTGCCTGAACATTTCTTACAAACTTCATAAACGAAATGGATCTG
ATTGCAATTGATATCATGAACGGAACAGGCCCATCATACACATATCATCA
CCATATGTGACATTGCAAATATGACATCCGAGACTGCGGTAATAGAACCA
GCGCCTGAGAATACCAGTGACCATCTTCCAGTTTCCACTTCCTTATTTCT
CGAGAACACATCAGATCATCATCAACAGCAAACAACACCTCCGAGATGGT
CTCAATTACCCAACTATCTTTGGTCCAATGAAAGATTTCTGGAGCTCTAC
AAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAAGCggaaatattaac
aaaaatttAGACACTCTCTCTGATCTACTTAAGACTGTGCTAGTAAAAGC
TATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAACCAAAACAGTGGTG
GAATCAGGATCTAACAAGGTGCAGAAATACACTCAAACAAAACTTCAATA
TATGGAGAGACAATGGTTTCGAAAAGGATATGAAGAATTCAGTGTATTAT
GCCCGATATGCGTTTGCCAGGAAAATATTTCGTTATCTCATGCGCCACTA
CAAAAACCAAGCGACGGCCAAATACTACGTAAACATTGATcggttaaaga
aaataaacccTAGACACTACTGGAAAAAGATTATACTTAACAAAACATCA
GCAGAAAAACTATACACAATTAACAACAAAACGTCAACAGAGGAGATCAC
AGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAACGAACCTAGAGTCC
AACATATTGACAATGAATACGCAAACGCTCAATTACTGTGAATCCTACAG
GAACTACCATACAACTCAGAATTCCACATAACCGAGATCGAAGTAGAGAA
CGCCATAAGTAGACTCAACAAAAACAAGACTATGGACCCATACCATCTGA
AAGCAGAACACTTCGTACATGCCTCGAGTAACATTTTCATAACAGAAATA
ACTAAAATCATCAATACTGTCTTCAAAACTAGAACACCAGAAGCTCTAAG
TGTATCAATAATAATTCCAATCTTACCGTAAATCTCTTAAGTACTGATTC
TAAT Run BLAST on NCBI protein sequence of TCONS_00072832-protein >TCONS_00072832-protein ID=TCONS_00072832-protein|Name=TCONS_00072832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MGSVHSLQRNEPLKKDQVKYVKTIAYYVQDLKHLPRGMTKVLDHLYLGNW
QDATDVEKLREVGITHIINTVDEGEKNTSTKKDFYGPDIEYMGFNSQDDE
NYEIMKRVRRKVFNSLHGGYQ Run BLAST on NCBI transcript from alignment at scaffold_86:171470..176137+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072832 ID=TCONS_00072832|Name=TCONS_00072832|organism=Clytia hemisphaerica|type=transcript|length=4668bp|location=Sequence derived from alignment at scaffold_86:171470..176137+ (Clytia hemisphaerica)
atagaggtatgaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAG
CGTAATGAGCCATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGC
TTATTATGTTCAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCT
TGGATCACCTTTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAG
CTACGAGAAGTAGGtgagaaatcattttctttttcaaaaacctatGCTTT
ATCTTCTCAAGGAATTATCATAGGTGGTTTTAGACGCTGTCGAACTTGTC
AGGGGAAGAGATTTGTTAATTAGTTAGATTAATTGCATTTTCATTGTCAa
tacgagcgttgcactccttcgcatgtttccgacgtacttgctctactttc
ttaaatccgccagtggCCATGGGTCTGCCTTGGAACTTTACCAAGGCAGG
GCTAGTGAAAATGAAATCTAAAGCCTCAGTAAAATAAAAGctcatttctt
tcttttatcaaTTTAGCCACTTAACCAAGTGCTACTGGCATCATTTGCTT
GATCTTTTCGGTCCTATATCGCtagacacccctttctcacagacccggta
ggatattttcagccagtggggataaaataacggactaaaagtcgacgggg
attgatattcccatattttcatggctggggatttcatttcttttgttttc
aagtcagcaAATTCATGGcaatttatttgattattttcaatgggacAGAA
ATTAGAGGAtcattttccaccggggacgatattttggccattttttccat
tCGGAAGGGTTCCCAGTAGATCTGTGGGAAGGGGGTGTCACAGGTCATAA
TTTAAGAGCACTTCGACTCATGGCGCTCTGTTTTTTACCCTACAATTAAA
AGGCAGTTAAGATTGCTTTTTTTCTTAGTTGTGGTTGAAATCTGGCATAT
TTCTTCCTCGGGTATtttatctgggggtgttttttttttctccaaatagt
aggggccaagcctggggttctGTGACATCTTTTTTTACGACCTAGCCGGA
TTAGGCCTGGAAAAACTTTTCATGATCAAAATAGTgccgccataggcaaa
actgcaagggaaaataaggggtagagaaatagcttattttcgcgtgaaat
tctgagcaaaaactttattacaacaactctctgactaaaacacacagtCG
GGGTACCTAAGGGCACTCCCGAATGGTCTCATGAAGCttgtaaatgtttt
ttaggttttttcgaagcatttcgATATGGAAAATAAGATGGGGTATGGTC
AGATGGTCCCACTtgttgaaaaatcgaaaaatttcgaaaaaaactctttt
taccaaattttcatgattttgatgacgtcacagaaaTAAGAATTTAAATA
ACTTCTATTAGGAGAAAGATTTTCACCATAAAGGTGTAAATCAATAAAAG
GAAGCGAtccacgaaaaaaaaattaaaattctttgctgacgtcagcaaat
tttgtgaaaaaaccgTTTCGGCtaaaatatgctgacgtcagcaaatgatt
ttaaatttcCTAGGGCGAATATCTAGAGGTCTTCttttcgtttttcaaaa
atttagatttttgaggCCTGTGCATAGGAGTTTTTCGCCAAACCTAGGCT
GAATAAGGAATAAATATTTATGGTTTCAATAATGAGTTTTTAAGTTAGAT
TTTCTTGCTACAatcttaaaataatttgaagctattgaagttgagcccag
tgcgttaaGCGCATTCGACTATTTTTAATCGAATTCGAGTTACATAAACc
ttttcattaaaataataaattacgtcacgaaaatCACTTGCCTtctattc
aaacaattaccatcgTGGTGAGTATGTCCTTTGAGACAGTAAATGACTTT
GTTATGAATAGGAATCAGTTTTAATAAAATGCGCTGGGAGTCAATCACCA
TAGGAATAATTTCAAAAGGAGGCAAGTGAttttcgtaacgtaatttatga
aaaagtctattgCTAGCgtgcacctcactaaaaaccgggatttttcatct
cgtctcttagtgagttccactttgacgagtttcgaaaaatagaagccttt
caagtgctttgacgcaaatttgattattttgctactgcaggagcttcgaa
agttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaaaacctggg
ctcaaaacattcaaaaaagtcgcaaagtggaatagacgtgtAAAAAAACG
CgagtgacgtctagtataggctagtcTATTGCGTGCttgttaaaaaagtt
aaaagttctGCGTGAGTTGGATATTAGCCACTGATATATCAATGATCTGG
ATTTTTCACCATCTTATTTTCCAGGAATCACACACATTATCAACACAGTC
GATGAAGGGGAAAAAAATACCAGTACGAAGAAAGATTTTTACGGACCAGA
TATCGAATATATGGGATTTAACTCGCAAGATGATGAAAATTACGAAATTA
TGAAACATTTTGAGGATGTTCACAAATTCATAGAAAACGCGAAGGCGTCA
GGTGGAAAATGTTTACNAAACATTTTGAGGATGTTCACAAATTCATAGAA
AACGCGAAGGCGTCAGGCGGAAAGTGTTTAATTCACTGCATGGCGGGTAT
CAATAGAAGTGGTTGCCTAGCAACTGCGCATGTTATGTTAGATCAAAATA
TTGGACCAATAACAGCCGCACGATTCGTTTATGAGAAAAGAGGTGTGCTG
CTTTCAAATAATGGGTTTATAGAACGTTTAGTTAAATTTGCTGTCGATCG
TGATTTGCTTTATTTAGATAAAGACAATATACTTCCTCTGTATGGGAACC
ACTGAATATTACAACATCGTTTAAACGTAAAAGAATGGTAGTAGAATCGA
GGTTATATCCAGCAATTGTATGGAAATATTTAGTTTCCTAAACCACAAAA
TTCGTTGCATAGAGAAACTGTAATTGCATTAcatttggacctaccccggt
ggagctgctataaatttacaaattttcagaTGCCTAAGGccaaaaaggaa
atttgaattttacgaGCTAGAAAATCAGACGAATTTATTTATACCGTTGC
GGACGCAGTCTAGTGAAAGGGAAACGTAAGACGGAGTCAGACTGAGTCCT
GATAAAACGAATGTATAttcatgctttttttataagaatagtgtactttg
gatgagggtcaagtattcttaagaaagtgccaaaattgagggtgaaatat
tcttaacatatatacttgacttttttacaaacatgagaaatgatcaattt
gagagttttggacttttgagtgaacatttgggttaaaattacattccttc
ctcaaaactttatctctaacaaaggaagtagttttttctgttaaccaaat
acaaattgactgtattcttatcaaactCTGTGAAATGCAAtgcaaaatat
tcttataaagcgTGTTTACAGACATTTTGAGTTATAAATTGGTTTTAAGA
ATCGTACGTTTCCTTTAATGATCAGTTTCCTTTGTGTGATTTTCCTCGAC
TTCCTCTTCGTGGAAACTTGTTGCCTGAACATTTCTTACAAACTTCATAA
ACGAAATGGATCTGATTGCAATTGATATCATGAACGGAACAGGCCCATCA
TACACATATCATCACCATATGTGACATTGCAAATATGACATCCGAGACTG
CGGTAATAGAACCAGCGCCTGAGAATACCAGTGACCATCTTCCAGTTTCC
ACTTCCTTATTTCTCGAGAACACATCAGATCATCATCAACAGCAAACAAC
ACCTCCGAGATGGTCTCAATTACCCAACTATCTTTGGTCCAATGAAAGAT
TTCTGGAGCTCTACAAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAA
GCggaaatattaacaaaaatttAGACACTCTCTCTGATCTACTTAAGACT
GTGCTAGTAAAAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAA
CCAAAACAGTGGTGGAATCAGGATCTAACAAGGTGCAGAAATACACTCAA
ACAAAACTTCAATATATGGAGAGACAATGGTTTCGAAAAGGATATGAAGA
ATTCAGTGTATTATGCCCGATATGCGTTTGCCAGGAAAATATTTCGTTAT
CTCATGCGCCACTACAAAAACCAAGCGACGGCCAAATACTACGTAAACAT
TGATcggttaaagaaaataaacccTAGACACTACTGGAAAAAGATTATAC
TTAACAAAACATCAGCAGAAAAACTATACACAATTAACAACAAAACGTCA
ACAGAGGAGATCACAGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAA
CGAACCTAGAGTCCAACATATTGACAATGAATACGCAAACGCTCAATTAC
TGTGAATCCTACAGGAACTACCATACAACTCAGAATTCCACATAACCGAG
ATCGAAGTAGAGAACGCCATAAGTAGACTCAACAAAAACAAGACTATGGA
CCCATACCATCTGAAAGCAGAACACTTCGTACATGCCTCGAGTAACATTT
TCATAACAGAAATAACTAAAATCATCAATACTGTCTTCAAAACTAGAACA
CCAGAAGCTCTAAGTGTATCAATAATAATTCCAATCTTACCGTAAATCTC
TTAAGTACTGATTCTAAT Coding sequence (CDS) from alignment at scaffold_86:171470..176137+ >TCONS_00072832 ID=TCONS_00072832|Name=TCONS_00072832|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_86:171470..176137+ (Clytia hemisphaerica)
atgggTTCAGTGCATTCGCTACAGCGTAATGAGCCATTGAAAAAAGATCA
GGTGAAATATGTTAAAACGATTGCTTATTATGTTCAAGATTTGAAACACT
TACCTCGAGGAATGACCAAAGTCTTGGATCACCTTTATCTTGGTAATTGG
CAAGATGCAACCGATGTTGAAAAGCTACGAGAAGTAGGAATCACACACAT
TATCAACACAGTCGATGAAGGGGAAAAAAATACCAGTACGAAGAAAGATT
TTTACGGACCAGATATCGAATATATGGGATTTAACTCGCAAGATGATGAA
AATTACGAAATTATGAAACGCGTCAGGCGGAAAGTGTTTAATTCACTGCA
TGGCGGGTATCAATAGatgggTTCAGTGCATTCGCTACAGCGTAATGAGC
CATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGCTTATTATGTT
CAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCTTGGATCACCT
TTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAGCTACGAGAAG
TAGGAATCACACACATTATCAACACAGTCGATGAAGGGGAAAAAAATACC
AGTACGAAGAAAGATTTTTACGGACCAGATATCGAATATATGGGATTTAA
CTCGCAAGATGATGAAAATTACGAAATTATGAAACGCGTCAGGCGGAAAG
TGTTTAATTCACTGCATGGCGGGTATCAATAGatgggTTCAGTGCATTCG
CTACAGCGTAATGAGCCATTGAAAAAAGATCAGGTGAAATATGTTAAAAC
GATTGCTTATTATGTTCAAGATTTGAAACACTTACCTCGAGGAATGACCA
AAGTCTTGGATCACCTTTATCTTGGTAATTGGCAAGATGCAACCGATGTT
GAAAAGCTACGAGAAGTAGGAATCACACACATTATCAACACAGTCGATGA
AGGGGAAAAAAATACCAGTACGAAGAAAGATTTTTACGGACCAGATATCG
AATATATGGGATTTAACTCGCAAGATGATGAAAATTACGAAATTATGAAA
CGCGTCAGGCGGAAAGTGTTTAATTCACTGCATGGCGGGTATCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072832-exon-scaffold_86-1491911889:171470..171682 | TCONS_00072832-exon-scaffold_86-1491911889:171470..171682 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1510915933:171470..171682 | TCONS_00072832-exon-scaffold_86-1510915933:171470..171682 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1575043694:171470..171682 | TCONS_00072832-exon-scaffold_86-1575043694:171470..171682 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1491911889:173844..173975 | TCONS_00072832-exon-scaffold_86-1491911889:173844..173975 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1510915933:173844..173975 | TCONS_00072832-exon-scaffold_86-1510915933:173844..173975 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1575043694:173844..173975 | TCONS_00072832-exon-scaffold_86-1575043694:173844..173975 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1491911889:174079..176137 | TCONS_00072832-exon-scaffold_86-1491911889:174079..176137 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1510915933:174079..176137 | TCONS_00072832-exon-scaffold_86-1510915933:174079..176137 | Clytia hemisphaerica | exon |
| TCONS_00072832-exon-scaffold_86-1575043694:174079..176137 | TCONS_00072832-exon-scaffold_86-1575043694:174079..176137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:171470..176137 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029021 | Prot-tyrosine_phosphatase-like |
Blast
The following BLAST results are available for this feature:
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