TCONS_00072831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072831
Unique NameTCONS_00072831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=transcript|length=2330bp
gatgttcttttaaaaaaaagttgtttttacatttctctatcatgtgaaca
gttcagttgttcacgtgttaggaaaaaaacatctctgtatataagattaa
atatttcacattgttgtagataagagatagccgaatggtctaaggcgtct
aTGGCTAATATTAGTGACTCCAGGTTCAAATCtcttgttcagttcatatt
tttattcgctgggccttcatgccctctgggcttcttgttttcttttaaga
aaaagtaaaaaaaaatgtccATCACAAGTGAAAATCCCACAACAACTTTA
ACTGGATTTAACGAAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATC
GAATGTTTTCATTCATGTGATTGCTGCATTCATTGCACTTCGAGCACTTC
ACAAACACAAATACGGACGGTACCTACCTATCGCAATCATCGTGTTTGGA
TTTCTGTATCCTATCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTG
GATATACACTGCAGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTT
ATGGTGTGGGGCAGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTG
TATGGAACACTGTAATGAATAGCTTTGAGGTCATACAGCTTATGTAGTGA
TAAAAGCTATAAAATAGCTTCATCTTTGCCTCAATTTGAACATGACTGTG
GAAACTCGTGGAAatcaagaaatcaagaaattgGTGATTCGCGTAAATTA
ATAATCATTTGTATGTGGATCTTCTAATATGGATTTTCTGTTTTACGAAA
TCCTTTTAGATTTGTTGATCCTTTTCAAGCCTGTATAAACATTGTAACGT
GTTGCTTTGAGTTAATACAGCTAACAAAGTAATGAAGCTATCACAGAGCA
AATTTCGCCTATCTTGGTCATTTGTTTAACTTTGAAGATGGCCATGGCCA
GTTTCAAGGCTGTATAAACATTTTAACGTGTCACTTTGAGTGTATACAAC
TGACACAGTAATGAATAGCTTCATAGCGACAGAGCTGATGTCGTCTACCT
TGGTTTTTTGGTTTAATTTAAATATGGCTAAGGAAACACATAGAAATCAA
GAAAGTCGCATAGTAATTCGTGTGAAAGAATGATTTTACTAACTAAAGGC
TGAGGATTTACCAATCTCACACGTGGATGTCCTGTTGCACGAAATCATGT
TGAAGTTCATCTCTATCGATCCTTTTCAAGGCTGTACAGTATAAACCATT
GTAGTGTATAGCTTGATGTATAGCTTGATTCAATACACCACAGCTGATCT
TGgttatttcttttaatttaaacATGGCTAAAGAAGCACAAATCATGACA
TTCGCATCATAACTCGTGTGAAGGAATAAGGACTCTTTCAAtatgaaaat
gactgaaaaggTCAAACCCATGCAGTTCTGGTTATTGACAGTCATTTTAT
CGATCATGACTATCAAAGATTTATCCCAAACATAGTGTTTCCCGTATCAT
AATCGGTCCTCAGCAATTTCATTGTGTTTGTTGGCTGATTTAAtacagtt
gaactcatgtaattcgaattctaaAGAGACCGAGATTTTTGTTCGAAACA
TGAGTTTCGAACTAAAtgagttttcatatttttgacctgatttgatgaaa
aaagactttcccaggtttacttttgaacaattttgtattttcgagcTAGA
ATGATGAAATGCTAGTATAAATAATCTTgacacaaaaatttaaaagtcaa
ttcATAATtcgattgtttcattttttgctCTTGTTCCTTGGAAATCTCCT
CAGATCTTCTGAATCAGTGGGGTGATGTTCGATGACTCGAAAAGAGTCCT
CTTTTTGAGAGTGTCAATAGCCTTGTCAATCAATAAAGtcgaaaattcga
attacattAAACTTTCTTGATGGGACCTGAAATTCTGTTCGATTTGAATG
ATTTTTCGATTTACATGGGTTCGAATTAAAGGagtttttttaaggttttc
aaggtAAATTCTGAGGGGACCCACGGAATCTGTTCGAATTAGGTGAGTTT
TCGAATTATAGTTCGAACTACATGAGTTAAAGTGAATTGTGAGGCTTGGA
TTCGTTATGCGGTTATACGGTTTTGATGGGTTCACATATTTATTATACAT
ATCTTGTAAAATTTTGCGGGAGAAATGACTTtgctttatttatttattta
tttgttatttatttATACTGTTTACTTTATATGTTTCACTTTGATAGAGA
TCAgtaaactgagcaaaaaaatataCTGCAACTTTTTTCCAACTTTTGTG
GATCAGAAGTTATGGGTGTTTTTGtagtca
Run BLAST on NCBI

protein sequence of TCONS_00072831-protein

>TCONS_00072831-protein ID=TCONS_00072831-protein|Name=TCONS_00072831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSITSENPTTTLTGFNEIWYKIFLYCLGSNVFIHVIAAFIALRALHKHKY
GRYLPIAIIVFGFLYPISGGFITSCCIAWIYTAANYAMEVQMCAIYGVGQ
TFFLVVVSFIRLYGTL
Run BLAST on NCBI

transcript from alignment at scaffold_86:167356..170881+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=transcript|length=3526bp|location=Sequence derived from alignment at scaffold_86:167356..170881+ (Clytia hemisphaerica)
gatgttcttttaaaaaaaagttgtttttacatttctctatcatgtgaaca gttcagttgttcacgtgttaggaaaaaaacatctctgtatataagattaa atatttcacattgttgtagataagagatagccgaatggtctaaggcgtct aTGGCTAATATTAGTGACTCCAGGTTCAAATCtcttgttcagttcatatt tttattcgctgggccttcatgccctctgggcttcttgttttcttttaaga aaaagtaaaaaaaaatgtccATCACAAGTGAAAATCCCACAACAACTTTA ACTGGATTTAACGGTAtaaaatgttttaatcttttttaaCGCCTCACAAT GGAGGGTCAGTGTGACGCACTTTGCAAACAAAAAGATTCGATCATTTTGA GTGTAATTTTAAACACTATAAGAACAAACCGTACGGTTTATTTCATTGCC ATTGGAAGAATCTTTGTACTAAAAATACACCgagaaaataaagaactaaT TTACAATTTCTACACGGTGTTTCATGCCGGCTCAATCCTAAGACGATgaa gattttatattttattttgaataaaatctaCATTGATTGAAACTTGCATT GCCTGAAGGTGGCGCCAGCATGAAACATTGTGGTTCTTTTCATTTGACTG TACTAACAATGATAGGTCTGTTCACACGTACAACACATTCTCCTGTCATT TTTAACTCTCAATCCGATAAAtgaatgacaaaaattttttccctatctta tttttgttttaaactaTTTTAGAAATTTGGTACAAGATCTTTTTGTATTG TTTGGGATCGAATGTTTTCATTCATGTGATTGCTGCATTCATTGCACTTC GAGCACTTCACAAACACAAATACGGACGGTACCTACCTATCGCAATCATC GTGTTTGGATTTCTGTATCCTATCAGTGGAGGTTTCATTACAAGTATGCT AATATTTCCATGTGAATGAGAAACCATCGCAATTCCCAGTTTTTGGGTCT TTAAATCGTCTTTTTTATGGTGaagttttaagaattttcttATACTTTAT CCGAGTTTAGGCGAACTATAAAAAAAGCCTGTGGGGTTAATTCATTCCTA TAATTTGATTGTTACTTTTTAACAATATTTCACCTTATTTTTATGATATG TTCTAAACATATAGCAACAAATGTCAATAAGTCAAATAGCGCTTTGCTGC ATCAAACAaggaaaaaacaatgataccgCGTGTCCAAGAAAAGAGTCCTC TTTGAAGTGAAATTTCTTGAGAACTACAGTATGAACTGTTAAAGAAACaa tctttttgcattggaaagaggagggatgataaacttaaattttgaggggt catttatcaaatttggttAAAAGCTCATCTAAAGTCAAagctaaatgcta aaacattacttctcaaaaaagttgataaaaggCGAAAAACGAGGATATCA AATCATCATATTAGTTCttctattgttttctttgtCTAATTTAACGAACA TTCGTGGGTATCATTAGAGACATAATGCTTTTTCAAGccctaaaaattca aaatcttagGAACATTTTGTGTCTTTGTACAATAAATTTAATACCCTCAT TTTACCCTGAAATGCCATTAGATTTGTGATATTAGGCTGGTTAAAAATTT TTGTCTAAAAGTCTTAATTTCGTATTTTAGGTTGTTGTATTGCTTGGATA TACACTGCAGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGG TGTGGGGCAGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATG GAACACTGTAATGAATAGCTTTGAGGTCATACAGCTTATGTAGTGATAAA AGCTATAAAATAGCTTCATCTTTGCCTCAATTTGAACATGACTGTGGAAA CTCGTGGAAatcaagaaatcaagaaattgGTGATTCGCGTAAATTAATAA TCATTTGTATGTGGATCTTCTAATATGGATTTTCTGTTTTACGAAATCCT TTTAGATTTGTTGATCCTTTTCAAGCCTGTATAAACATTGTAACGTGTTG CTTTGAGTTAATACAGCTAACAAAGTAATGAAGCTATCACAGAGCAAATT TCGCCTATCTTGGTCATTTGTTTAACTTTGAAGATGGCCATGGCCAGTTT CAAGGCTGTATAAACATTTTAACGTGTCACTTTGAGTGTATACAACTGAC ACAGTAATGAATAGCTTCATAGCGACAGAGCTGATGTCGTCTACCTTGGT TTTTTGGTTTAATTTAAATATGGCTAAGGAAACACATAGAAATCAAGAAA GTCGCATAGTAATTCGTGTGAAAGAATGATTTTACTAACTAAAGGCTGAG GATTTACCAATCTCACACGTGGATGTCCTGTTGCACGAAATCATGTTGAA GTTCATCTCTATCGATCCTTTTCAAGGCTGTACAGTATAAACCATTGTAG TGTATAGCTTGATGTATAGCTTGATTCAATACACCACAGCTGATCTTGgt tatttcttttaatttaaacATGGCTAAAGAAGCACAAATCATGACATTCG CATCATAACTCGTGTGAAGGAATAAGGACTCTTTCAAtatgaaaatgact gaaaaggTCAAACCCATGCAGTTCTGGTTATTGACAGTCATTTTATCGAT CATGACTATCAAAGATTTATCCCAAACATAGTGTTTCCCGTATCATAATC GGTCCTCAGCAATTTCATTGTGTTTGTTGGCTGATTTAAtacagttgaac tcatgtaattcgaattctaaAGAGACCGAGATTTTTGTTCGAAACATGAG TTTCGAACTAAAtgagttttcatatttttgacctgatttgatgaaaaaag actttcccaggtttacttttgaacaattttgtattttcgagcTAGAATGA TGAAATGCTAGTATAAATAATCTTgacacaaaaatttaaaagtcaattcA TAATtcgattgtttcattttttgctCTTGTTCCTTGGAAATCTCCTCAGA TCTTCTGAATCAGTGGGGTGATGTTCGATGACTCGAAAAGAGTCCTCTTT TTGAGAGTGTCAATAGCCTTGTCAATCAATAAAGtcgaaaattcgaatta cattAAACTTTCTTGATGGGACCTGAAATTCTGTTCGATTTGAATGATTT TTCGATTTACATGGGTTCGAATTAAAGGagtttttttaaggttttcaagg tAAATTCTGAGGGGACCCACGGAATCTGTTCGAATTAGGTGAGTTTTCGA ATTATAGTTCGAACTACATGAGTTAAAGTGAATTGTGAGGCTTGGATTCG TTATGCGGTTATACGGTTTTGATGGGTTCACATATTTATTATACATATCT TGTAAAATTTTGCGGGAGAAATGACTTtgctttatttatttatttatttg ttatttatttATACTGTTTACTTTATATGTTTCACTTTGATAGAGATCAg taaactgagcaaaaaaatataCTGCAACTTTTTTCCAACTTTTGTGGATC AGAAGTTATGGGTGTTTTTGtagtca

Coding sequence (CDS) from alignment at scaffold_86:167356..170881+

>TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_86:167356..170881+ (Clytia hemisphaerica)
atgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAACGA
AATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCATTC
ATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAATAC
GGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCTAT
CAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGCAG
CCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGCAG
ACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTGTA
AatgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAACG
AAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCATT
CATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAATA
CGGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCTA
TCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGCA
GCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGCA
GACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTGT
AAatgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAAC
GAAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCAT
TCATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAAT
ACGGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCT
ATCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGC
AGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGC
AGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045209XLOC_045209Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072831-proteinTCONS_00072831-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072831-exon-scaffold_86-1491911889:167356..167668TCONS_00072831-exon-scaffold_86-1491911889:167356..167668Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1510915933:167356..167668TCONS_00072831-exon-scaffold_86-1510915933:167356..167668Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1575043694:167356..167668TCONS_00072831-exon-scaffold_86-1575043694:167356..167668Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1491911889:168128..168298TCONS_00072831-exon-scaffold_86-1491911889:168128..168298Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1510915933:168128..168298TCONS_00072831-exon-scaffold_86-1510915933:168128..168298Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1575043694:168128..168298TCONS_00072831-exon-scaffold_86-1575043694:168128..168298Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1491911889:169036..170881TCONS_00072831-exon-scaffold_86-1491911889:169036..170881Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1510915933:169036..170881TCONS_00072831-exon-scaffold_86-1510915933:169036..170881Clytia hemisphaericaexon
TCONS_00072831-exon-scaffold_86-1575043694:169036..170881TCONS_00072831-exon-scaffold_86-1575043694:169036..170881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:167356..170881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.60341 8.23266 4.51719 3.78423 3.06777 2.46565 6.27856 6.38109 4.53502 3.7703 5.4346 3.66507 4.45684 4.38656 4.83806 4.84241 6.18151 6.85605 4.95275 4.28678 6.0538 6.00988 9.33838 8.7876 5.67958 5.38589 3.25194 3.26949 4.52017 5.6403
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019334Transmembrane_pr_170
Blast
BLAST of TCONS_00072831 vs. Swiss-Prot (Human)
Match: T170A (Transmembrane protein 170A OS=Homo sapiens GN=TMEM170A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.467e-21
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  289 TTTLTGFNEIWYKIFLYCLGSNVFIHVIAAFIALRALHKHKYGRYLPIAIIVFGFLYPISGGFITSCCIAWIYTAANYAMEVQMCAIYGVGQTFFLVVVSFIRLYGTL 612
            +T+L  F E+WY +FL+ L S++F HV A  +AL  L  HKYGR++ ++I++ G + PI+ G +TS  IA +Y AA   M        G GQTF ++VVSF+R+  TL
Sbjct:   37 STSLCSFPEMWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVVSFLRILATL 144          
The following BLAST results are available for this feature:
BLAST of TCONS_00072831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T170A3.467e-2143.52Transmembrane protein 170A OS=Homo sapiens GN=TMEM... [more]
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