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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072827 ID=TCONS_00072827|Name=TCONS_00072827|organism=Clytia hemisphaerica|type=transcript|length=560bp
AATGAATCAGGCATACATATTGGTCCCTTAGAAACAGATACAGATCGTAG
ACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGTTTTCAGTTG
CGGactTTGATGCAGTTGAATTCATGAATATTGCAAAAACTTATTGCGGC
GTTCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTCTCTCAAGGC
TGGTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACCAAGGAATAG
AAACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATGGTATTGCAT
AAACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCCAAAATCGAA
ATaattgaaaatagaaatgtagATTTGATCATTAGATACATCGCTGTTTC
TATTTTCCATCTTTCAATTAGTTTTCGTTTTTAGTataacttttaccaaa
aaaatttatAGTTTATGAACCGTGCAAGCTGTCTGGACAAATCGAGTAAG
TTATACGTACTGATGTAAAACAAACGTTGTGTCGACCAGGTTTCACACAC
TTTAAAACTC Run BLAST on NCBI transcript from alignment at scaffold_86:83165..84102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072827 ID=TCONS_00072827|Name=TCONS_00072827|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_86:83165..84102+ (Clytia hemisphaerica)
AATGAATCAGGCATACATATTGGTCCCTTAGAAACAGATACAGGTATAAA
CTGAAATTTTGACTACATCAGCAAGCATATATGATATAATATTTTAGACA
AAATTAGTCATGCTGAAAATTTATTTGCTTCATTAAAGATTTTAAACCGA
TTGTGCAATAATACAACATACTGCAttgtggtgtttttttttttagactc
tttgactttttggagcatgttcttgtaaaatgaactgatttaaaataaaa
tttctttcctcTTACTTTCAGATCGTAGACTTGTAGAAATTGAAGACTCA
GAAGATTTCACTGAGGAGTTTTCAGTTGCGGGTAAGAAGTTGGAAATTGT
CTTATAACATTCAGATTTTTTTCGTACTTAANTTTCAAACATCACCTTAT
AATATGGATATCAGTGTGTAGATTAAAAAACTTACCACAAGAAATTAGTA
GATTTTTAatgtgtttctttttttctttcagactTTGATGCAGTTGAATT
CATGAATATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAA
ATGATTTGCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGT
GGCCAGGCGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTT
TGTCAACAAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGG
ATATGGTCAAAATTGTGCCAAAATCGAAATaattgaaaatagaaatgtag
ATTTGATCATTAGATACATCGCTGTTTCTATTTTCCATCTTTCAATTAGT
TTTCGTTTTTAGTataacttttaccaaaaaaatttatAGTTTATGAACCG
TGCAAGCTGTCTGGACAAATCGAGTAAGTTATACGTACTGATGTAAAACA
AACGTTGTGTCGACCAGGTTTCACACACTTTAAAACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072827-exon-scaffold_86-1491911889:83165..83207 | TCONS_00072827-exon-scaffold_86-1491911889:83165..83207 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1510915933:83165..83207 | TCONS_00072827-exon-scaffold_86-1510915933:83165..83207 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1575043694:83165..83207 | TCONS_00072827-exon-scaffold_86-1575043694:83165..83207 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1491911889:83436..83495 | TCONS_00072827-exon-scaffold_86-1491911889:83436..83495 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1510915933:83436..83495 | TCONS_00072827-exon-scaffold_86-1510915933:83436..83495 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1575043694:83436..83495 | TCONS_00072827-exon-scaffold_86-1575043694:83436..83495 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1491911889:83646..84102 | TCONS_00072827-exon-scaffold_86-1491911889:83646..84102 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1510915933:83646..84102 | TCONS_00072827-exon-scaffold_86-1510915933:83646..84102 | Clytia hemisphaerica | exon |
| TCONS_00072827-exon-scaffold_86-1575043694:83646..84102 | TCONS_00072827-exon-scaffold_86-1575043694:83646..84102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:83165..84102 + |
Blast
The following BLAST results are available for this feature:
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