TCONS_00072812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072812
Unique NameTCONS_00072812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072812 ID=TCONS_00072812|Name=TCONS_00072812|organism=Clytia hemisphaerica|type=transcript|length=276bp
ccCACTTTAACGGTCATTCCACCGGGCCTGTTAAGATAGTTTTGCTTACA
AAGTCGTCAAGACAGCACGCAACGTTTCTTCGACGTTTAACGGACGGCTG
TTTCTGTcatcttgaaaatattttgaagccGTCATATTTTTTAGTAAATA
CTGTTAATACTTGTATCGTGAATCAATAATTATATAATAAATTATTAATT
ATTTAAAAGAACAATTGTAAATAATATATATTACATCCTTACTTATATCA
TTACGCTAATGACACGCTAGGTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_84:117937..118212

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072812 ID=TCONS_00072812|Name=TCONS_00072812|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_84:117937..118212 (Clytia hemisphaerica)
CGAAACCTAGCGTGTCATTAGCGTAATGATATAAGTAAGGATGTAATATA
TATTATTTACAATTGTTCTTTTAAATAATTAATAATTTATTATATAATTA
TTGATTCACGATACAAGTATTAACAGTATTTACTAAAAAATATGACggct
tcaaaatattttcaagatgACAGAAACAGCCGTCCGTTAAACGTCGAAGA
AACGTTGCGTGCTGTCTTGACGACTTTGTAAGCAAAACTATCTTAACAGG
CCCGGTGGAATGACCGTTAAAGTGgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045192XLOC_045192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072812-exon-scaffold_84-1491911889:117937..118212TCONS_00072812-exon-scaffold_84-1491911889:117937..118212Clytia hemisphaericaexon
TCONS_00072812-exon-scaffold_84-1510915933:117937..118212TCONS_00072812-exon-scaffold_84-1510915933:117937..118212Clytia hemisphaericaexon
TCONS_00072812-exon-scaffold_84-1575043694:117937..118212TCONS_00072812-exon-scaffold_84-1575043694:117937..118212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:117937..118212 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.01695	0	1.15521	18.9858	10.0019	13.4076	13.1796	4.39398	10.341	1.58483	4.86176	6.24215	10.0839	1.18434	5.7194	3.52291	4.41329	24.3888	12.1805	5.04147	2.21315	2.39144	4.34833	7.83769	14.4896	6.43484	2.28915	1.73624	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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