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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072809 ID=TCONS_00072809|Name=TCONS_00072809|organism=Clytia hemisphaerica|type=transcript|length=652bp
GTACTTTACTTGATAAAGTCTACTCCAACTTCGCAATATTGTATTTACAC
ATGTGTGGTGATAATTTTCAAAGTAAAATAAAACACGCATGTCTAGTGTG
TATGCTGCTCTAGTGTAAATGTTAGGGTGTGACTTTCAATTTCGAATGGT
AGACCATCACCCCATGATGCATGAATTTGAGTCCATAAATGCCAGCAAAA
ATCAATCTTTTGGGCCCTTTCATTTACTTAGAACCCTAGAAGTCACTAAA
TTACCCCTCTTTTCTTCCAAAAAATCCCTTTTTATGCGCCTACAGAGGTT
tatcatgttttatttttattcccgcCATCATGGAAGCAAACTGAAGCACA
CGTTCTCATCTGTAGAGGCGATCCCTTACGcgaatcgaacgtttgcttcc
ataatggtggaagttATGCAACTTAACAAGGCATTGAACCTCTTTAATGA
CGGGAAGAAGTTTATTCCAGTTGAGTTCACAGCTTTTATAGTGTTAAAAT
cttggtttttctttttagcctCGGATGGAGAAATTGTATTGAACCCACAA
TCTAAAGAATGCTTTCAAATGGGTAAAATGCATAAAGAAATAGCCAAATT
CTTGTTGCAAGCGTCCGAAAATGAAGATATGGCAGATGAAGACATTATTA
AG Run BLAST on NCBI transcript from alignment at scaffold_84:289379..291611- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072809 ID=TCONS_00072809|Name=TCONS_00072809|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at scaffold_84:289379..291611- (Clytia hemisphaerica)
GTACTTTACTTGATAAAGTCTACTCCAACTTCGCAATATTGTATTTACAC
ATGTGTGGTGATAATTTTCAAAGTAAAATAAAACACGCATGTCTAGTGTG
TATGCTGCTCTAGTGTAAATGTTAGGGTGTGACTTTCAATTTCGAATGGT
AGACCATCACCCCATGATGCATGAATTTGAGTCCATAAATGCCAGCAAAA
ATCAATCTTTTGGGCCCTTTCATTTACTTAGAACCCTAGAAGTCACTAAA
TTACCCCTCTTTTCTTCCAAAAAATCCCTTTTTATGCGCCTACAGAGGTT
TATCATGTTTTATTTTTATTCCCGCCATCATGGAAGCAAACTGAAGCACA
CGTTCTCATCTGTAGAGGCGATCCCTTACGCGAATCGAACGTTTGCTTCC
ATAATGGTGGAAGTTATGCAACTTAACAAGGCATTGAACCTCTTTAATGA
CGGGAAGAAGTTTATTCCAGTTGAGTTCACAGCTTTTATAGTGTTAAAAT
CTTGGTTTTTCTTTTTAGCCTCGGATGGAGAAATTGTATTGAACCCACAA
TCTAAAGGTAATGGTTTTTTTAATGCTTGCCACTATAACGCCTATTTTTT
AACTTGTGAAAGTTGATATTGAAGTTTATATCACTTTTAAGGCCGTTCTC
CACTTACGCACTGCGATCGCACCGTTTGGCTTCAACCCTTTTTGCTTGGA
AAAAAGATTACGTCATAAAAATGTAGCGCTAGCCCGTTTCAACCGTTACG
TCAGATCGCGCCAATGGAATTGCTTCATTTTTTCTTTTGACCAATAGTGT
GGAAGCTTTGATAGATAAAGTGCGATCGCAGCGCGCGCAAGTGGCGACCG
GCCTTTAAAGCGTTCTACCAACTTTTAAAAAAAATCGCTGCAAGACTGAT
TCTTCTAAATCTGTCGCCCTCAGCTAAGCATGTATAATTTCGAGAGTAAA
ATTAATACTAATACTGCTTAATATAACAGCCTTGCAGCCCGTTAAAGATT
TTAAATACTAAAATTGAAACTGAAGTTGATTTGCGAAAACGGTTTTATAT
TAAATCAAATTTTGATCCCTATTTTTAGTAAGATTTTCGGAAATCTAACG
TCTAAAAATGGAAGTAAATCTACTCGGAGCTTACATTAAATTTGACTTAC
TTGCACTGTGCACCATCCATCTTCTTAGTGGAAAAGATTTAAACTAAATC
GTAATTTCCATTCCCAATTGAGATTTTAAGTTTGGAAAGTAAATTAATCT
ATGTATGAGGCAAAACTTAAACCACGCGTTTTTACTGCAATGTATAGACT
GCCCATAAATTTTTTATTTCGTTAGCTATAACAGTAATAATAAAGTGATA
GAATTAATACACTTTCAAAGGTTTTCTACGGGGAAAAAAGGAGCTTATTT
TAGGCAGTGTCTTAATGCTGGGTCAGATATATTAAAGCTACTTTTTTGCA
CAACAATATCCTGCAAACAAGTGATCGAAAGTTGTTTCGAGATGTGACCT
CACATTCTATTGCTTTTGTAAACAAAAAATACCAAAGCTGATTTCGAGCA
AATTTACAACCGAATGTTTTGATTAAAAGATGGAAAACGTTCTATTTATT
ATAAACATAAAAACATTTGATAGAGTATCAGTAAAATTCCTTTTTTTGAG
GAACTTTTTTTATACTACATGAACATCATCAGACCTTTCAATCAAAACAA
AACCTTTAACAATGTCCGGTTATCGGCTGAGGTAAATTGAATGGTTGTAA
AGTATTTTTAAATGAAGAAATCATACCAATACTAAATGGCTATTTGTCTA
AATTAAGTACAGAACTACGACGCTCTCTTATTCGATTTTCTTCAATCTTC
ATCGAATAAGAGAGCGTATCGAATAATACAACGTCGTTTCTTGTTGACCA
CCACTTTCAATATTATCGAATAAAGGAACGCACTTAGTAGTAGAATGTCG
AATTTGAGAGCATNCACTTTCAATATTATCAAATAACGGAATGCACTTAG
TAGTAGAATGTCGAAGAGCATCAACTGTACTTTAAATATAACATTATTAA
AAAAAAGTTCATACTAACACAGTCCTTTTTAAAGCAACATTGATATATTT
TGATAATAAGTTGTAAATCTTGGTTTTCACTTGCTTAGAATGCTTTCAAA
TGGGTAAAATGCATAAAGAAATAGCCAAATTCTTGTTGCAAGCGTCCGAA
AATGAAGATATGGCAGATGAAGACATTATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072809-exon-scaffold_84-1575043694:291055..291611 | TCONS_00072809-exon-scaffold_84-1575043694:291055..291611 | Clytia hemisphaerica | exon |
| TCONS_00072809-exon-scaffold_84-1575043694:289379..289473 | TCONS_00072809-exon-scaffold_84-1575043694:289379..289473 | Clytia hemisphaerica | exon |
| TCONS_00072809-exon-scaffold_84-1510915933:291055..291611 | TCONS_00072809-exon-scaffold_84-1510915933:291055..291611 | Clytia hemisphaerica | exon |
| TCONS_00072809-exon-scaffold_84-1510915933:289379..289473 | TCONS_00072809-exon-scaffold_84-1510915933:289379..289473 | Clytia hemisphaerica | exon |
| TCONS_00072809-exon-scaffold_84-1491911889:291055..291611 | TCONS_00072809-exon-scaffold_84-1491911889:291055..291611 | Clytia hemisphaerica | exon |
| TCONS_00072809-exon-scaffold_84-1491911889:289379..289473 | TCONS_00072809-exon-scaffold_84-1491911889:289379..289473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_84 | supercontig | scaffold_84:289379..291611 - |
Blast
The following BLAST results are available for this feature:
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