TCONS_00072809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072809
Unique NameTCONS_00072809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072809 ID=TCONS_00072809|Name=TCONS_00072809|organism=Clytia hemisphaerica|type=transcript|length=652bp
GTACTTTACTTGATAAAGTCTACTCCAACTTCGCAATATTGTATTTACAC
ATGTGTGGTGATAATTTTCAAAGTAAAATAAAACACGCATGTCTAGTGTG
TATGCTGCTCTAGTGTAAATGTTAGGGTGTGACTTTCAATTTCGAATGGT
AGACCATCACCCCATGATGCATGAATTTGAGTCCATAAATGCCAGCAAAA
ATCAATCTTTTGGGCCCTTTCATTTACTTAGAACCCTAGAAGTCACTAAA
TTACCCCTCTTTTCTTCCAAAAAATCCCTTTTTATGCGCCTACAGAGGTT
tatcatgttttatttttattcccgcCATCATGGAAGCAAACTGAAGCACA
CGTTCTCATCTGTAGAGGCGATCCCTTACGcgaatcgaacgtttgcttcc
ataatggtggaagttATGCAACTTAACAAGGCATTGAACCTCTTTAATGA
CGGGAAGAAGTTTATTCCAGTTGAGTTCACAGCTTTTATAGTGTTAAAAT
cttggtttttctttttagcctCGGATGGAGAAATTGTATTGAACCCACAA
TCTAAAGAATGCTTTCAAATGGGTAAAATGCATAAAGAAATAGCCAAATT
CTTGTTGCAAGCGTCCGAAAATGAAGATATGGCAGATGAAGACATTATTA
AG
Run BLAST on NCBI

transcript from alignment at scaffold_84:289379..291611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072809 ID=TCONS_00072809|Name=TCONS_00072809|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at scaffold_84:289379..291611- (Clytia hemisphaerica)
GTACTTTACTTGATAAAGTCTACTCCAACTTCGCAATATTGTATTTACAC ATGTGTGGTGATAATTTTCAAAGTAAAATAAAACACGCATGTCTAGTGTG TATGCTGCTCTAGTGTAAATGTTAGGGTGTGACTTTCAATTTCGAATGGT AGACCATCACCCCATGATGCATGAATTTGAGTCCATAAATGCCAGCAAAA ATCAATCTTTTGGGCCCTTTCATTTACTTAGAACCCTAGAAGTCACTAAA TTACCCCTCTTTTCTTCCAAAAAATCCCTTTTTATGCGCCTACAGAGGTT TATCATGTTTTATTTTTATTCCCGCCATCATGGAAGCAAACTGAAGCACA CGTTCTCATCTGTAGAGGCGATCCCTTACGCGAATCGAACGTTTGCTTCC ATAATGGTGGAAGTTATGCAACTTAACAAGGCATTGAACCTCTTTAATGA CGGGAAGAAGTTTATTCCAGTTGAGTTCACAGCTTTTATAGTGTTAAAAT CTTGGTTTTTCTTTTTAGCCTCGGATGGAGAAATTGTATTGAACCCACAA TCTAAAGGTAATGGTTTTTTTAATGCTTGCCACTATAACGCCTATTTTTT AACTTGTGAAAGTTGATATTGAAGTTTATATCACTTTTAAGGCCGTTCTC CACTTACGCACTGCGATCGCACCGTTTGGCTTCAACCCTTTTTGCTTGGA AAAAAGATTACGTCATAAAAATGTAGCGCTAGCCCGTTTCAACCGTTACG TCAGATCGCGCCAATGGAATTGCTTCATTTTTTCTTTTGACCAATAGTGT GGAAGCTTTGATAGATAAAGTGCGATCGCAGCGCGCGCAAGTGGCGACCG GCCTTTAAAGCGTTCTACCAACTTTTAAAAAAAATCGCTGCAAGACTGAT TCTTCTAAATCTGTCGCCCTCAGCTAAGCATGTATAATTTCGAGAGTAAA ATTAATACTAATACTGCTTAATATAACAGCCTTGCAGCCCGTTAAAGATT TTAAATACTAAAATTGAAACTGAAGTTGATTTGCGAAAACGGTTTTATAT TAAATCAAATTTTGATCCCTATTTTTAGTAAGATTTTCGGAAATCTAACG TCTAAAAATGGAAGTAAATCTACTCGGAGCTTACATTAAATTTGACTTAC TTGCACTGTGCACCATCCATCTTCTTAGTGGAAAAGATTTAAACTAAATC GTAATTTCCATTCCCAATTGAGATTTTAAGTTTGGAAAGTAAATTAATCT ATGTATGAGGCAAAACTTAAACCACGCGTTTTTACTGCAATGTATAGACT GCCCATAAATTTTTTATTTCGTTAGCTATAACAGTAATAATAAAGTGATA GAATTAATACACTTTCAAAGGTTTTCTACGGGGAAAAAAGGAGCTTATTT TAGGCAGTGTCTTAATGCTGGGTCAGATATATTAAAGCTACTTTTTTGCA CAACAATATCCTGCAAACAAGTGATCGAAAGTTGTTTCGAGATGTGACCT CACATTCTATTGCTTTTGTAAACAAAAAATACCAAAGCTGATTTCGAGCA AATTTACAACCGAATGTTTTGATTAAAAGATGGAAAACGTTCTATTTATT ATAAACATAAAAACATTTGATAGAGTATCAGTAAAATTCCTTTTTTTGAG GAACTTTTTTTATACTACATGAACATCATCAGACCTTTCAATCAAAACAA AACCTTTAACAATGTCCGGTTATCGGCTGAGGTAAATTGAATGGTTGTAA AGTATTTTTAAATGAAGAAATCATACCAATACTAAATGGCTATTTGTCTA AATTAAGTACAGAACTACGACGCTCTCTTATTCGATTTTCTTCAATCTTC ATCGAATAAGAGAGCGTATCGAATAATACAACGTCGTTTCTTGTTGACCA CCACTTTCAATATTATCGAATAAAGGAACGCACTTAGTAGTAGAATGTCG AATTTGAGAGCATNCACTTTCAATATTATCAAATAACGGAATGCACTTAG TAGTAGAATGTCGAAGAGCATCAACTGTACTTTAAATATAACATTATTAA AAAAAAGTTCATACTAACACAGTCCTTTTTAAAGCAACATTGATATATTT TGATAATAAGTTGTAAATCTTGGTTTTCACTTGCTTAGAATGCTTTCAAA TGGGTAAAATGCATAAAGAAATAGCCAAATTCTTGTTGCAAGCGTCCGAA AATGAAGATATGGCAGATGAAGACATTATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045189XLOC_045189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072809-exon-scaffold_84-1575043694:291055..291611TCONS_00072809-exon-scaffold_84-1575043694:291055..291611Clytia hemisphaericaexon
TCONS_00072809-exon-scaffold_84-1575043694:289379..289473TCONS_00072809-exon-scaffold_84-1575043694:289379..289473Clytia hemisphaericaexon
TCONS_00072809-exon-scaffold_84-1510915933:291055..291611TCONS_00072809-exon-scaffold_84-1510915933:291055..291611Clytia hemisphaericaexon
TCONS_00072809-exon-scaffold_84-1510915933:289379..289473TCONS_00072809-exon-scaffold_84-1510915933:289379..289473Clytia hemisphaericaexon
TCONS_00072809-exon-scaffold_84-1491911889:291055..291611TCONS_00072809-exon-scaffold_84-1491911889:291055..291611Clytia hemisphaericaexon
TCONS_00072809-exon-scaffold_84-1491911889:289379..289473TCONS_00072809-exon-scaffold_84-1491911889:289379..289473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:289379..291611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.605943 0.844254 0.843526 0.748382 3.14805 2.33694 4.82018 3.41478 2.11122 2.27625 1.86601 1.31559 3.12908 3.35556 3.67082 2.82736 4.2815 8.30999 2.93976 3.82331 2.51146 1.97076 2.20433 1.6936 4.36981 4.02911 3.10661 3.3844 0.764153 1.16917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top