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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072803 ID=TCONS_00072803|Name=TCONS_00072803|organism=Clytia hemisphaerica|type=transcript|length=6942bpRun BLAST on NCBI protein sequence of TCONS_00072803-protein >TCONS_00072803-protein ID=TCONS_00072803-protein|Name=TCONS_00072803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2142bp MADESAQKRQWEYKENSNLVLQADLSLIERRDRDEATGEVLSLQGHLSSMRun BLAST on NCBI transcript from alignment at scaffold_84:207268..250658- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072803 ID=TCONS_00072803|Name=TCONS_00072803|organism=Clytia hemisphaerica|type=transcript|length=43391bp|location=Sequence derived from alignment at scaffold_84:207268..250658- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:207268..250658- >TCONS_00072803 ID=TCONS_00072803|Name=TCONS_00072803|organism=Clytia hemisphaerica|type=CDS|length=218586bp|location=Sequence derived from alignment at scaffold_84:207268..250658- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072803 vs. Swiss-Prot (Human)
Match: U520 (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 3134.74 bits (8126), Expect = 0.000e+0 Identity = 1556/2134 (72.91%), Postives = 1819/2134 (85.24%), Query Frame = 3
Query: 78 MADESAQKRQWEYKENSNLVLQADLSLIERRDRDEATGEVLSLQGHLSSMKMGDKYLRARPPSLIEQEEKKAKKPKLSERETDSNYGKMKSSTLLSDKMEDMAGLFYRPKTTETRQTYEVLLSFIQAAIGDQPRDILCGAADEVLICLXXXXXXXXXXXXEISSLLGSMAEERYALLVNLGKKITDYSIDKDAIGDEDGIDENYGXXXXXXXXXXXXXXXX--XXXXXSDDEDNEGVEADAGGTLHGGLDDEEGGFKKTSDVLHPRQVDAYWLQRELNKFYNDPEVSRSKSEEVLEVLKTASDERDLENKMVLLLGHDKFSXXXXXXXXXXXXLYCTLLATVETVKERKNLESVMRSDPELNEILSQLVEQSSEDLVHAEQQRKAAARKSKIDADLNALEGDEKISRYA-RKMLDLEDLSFKDGSHLMANKKCQLPDGSFRKQRKGYEEVHVPALKPKPMKDDENYVMINDLPKYAQAAFEGYEKLNRIQSRLCESALKSDENVLLCAPTGAGKTNVAVLTILREISKHINLDGTINTSEFKVIYIAPMRSLVQEMVQNFGKRLQSYGLNVSELTGDHQLSKEQIDATQVIVCTPEKWDIITRKAGDRTYTQLVRXXXXXXXXXXXXNRGPVLEAIIARTIRQIESTQEPVRLVGLSATLPNYEDVAAFMRVNVDKGLFFFDNSFRPVPLEQQYVGVTEKKAIKRFQVMNEVVYDKTIEKAGKSQVLVFVHSRKETGKTARALRDTCLERDTLGQFLREESASMEILRTEAEQVKNLELKDLLPYGFAIHHAGMSRVDRALVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQIYSPEKGKWVELGALDILQMFGRAGRPQYDTKGEGILITNHSEXXXXXXXXXXXXPVESQMIGHLADNLNAEIVQGTIHNVKDACTWLGYTYLYVRMLRNPTLYGVSHDDLEHDKLLEQRRMDLIHTAATVLDKNQLVKYDRKTGLLQTTELGRIASHYYITHDSMATYNKLLKPTLSEIELFRVFSLSSEFKYINVREEEKMELQQLIERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALTADMVYVTQSAGRLMRAIFEIVLHRGWAQLTDRALNLCKMVDKRMWLSMTPLRQFKKMPLEVTKKLEKKDFPWERLYDLGHNEIGELIHAPKMGKVIHKFVHQFPKVELVTHIQPITRATLSVELTITPDFQWDEKIHGNSQAFWVFVEDVDGENILHQEYFLLKAKYAADEHVVKFFVPVFEPLPPQYFIRVVSDRWLHAETQLPVSFRHLFLPEKNAPPTELLDLQPLPVSALRNPDFEALYQDKFPYFNPIQTQVFNALYSSDDNIFIGAPTGSGKTICAEFAILHLLLQHHDARCVYVTPLQSLAEQVFTDWRSKFGIMLGKNVVLLTGETSADLKLLAKGNIIISTPDKWDVLSRRWKQRKNVQNVNLFILDEAHLIGGENGPVMEVICSRMRYISSQIEKTIRIVALSSSLANAKDVAQWLGVSTNNIFNFHPNVRPVPLELHIQGFNITHAGSRLIAMVKPAYKAICRLSPRKPVIVFVPSRKQSKITALDLLSFCGAENQPQRFLHCTEEDLQPHLKRISEKTLKETLTYGVGYLHEGLTDMEIKVVEQLFSSGAVQVMVVSRNLCWTVSTHAQLVIIMDTLFYEGKIHTYMDYPVTDVLQMIGRANRPLIDDTGKAVILCLSSKKEFYKKFLYEPLPIESHLDHCLHDHFNAEVVTKTIANKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHMSELVENTLSDLEQSKCVSIEDEMNVSPLNLGMXXXXXXXXXXXXELFSVSLSAKTKLKGLIEIISSAYEYENLPIRQHEDVILKQLSNRVPYKVANAKFTDPHVKTNLLIQAHLSRMQLSAEMQSDTEFILGKAMRLIQACVDVLSSNGWLSPAITAMELAQMVTQAMWSKDSYLKQIPHFSTDIVKRCQEKEVESVFDIMDLEDDMRNELLSLSDLQMQDVAKFCNRYPNIDLSYEVADKDSLSSGRPVVVNVNLEREDDQPGPVIAPFFPQKREEGWWLVIGDPKNNSLISIKRLTLQQKAKVKLDFIAPSSGNHAYNLYYMSDCYMGCDQEYPLKIAVTEG 6470
MAD +A+ Q+EYK NSNLVLQAD SLI+R RDE TGEVLSL G L +MGDK R +P Q +++ + + E + KMK TLLS+ +++M G+ Y+PKT ETR+TYEVLLSFIQAA+GDQPRDILCGAADEVL LK+++++DK+R+KEI LLG + RY +LVNLGKKITDY DK+ +D IDE YGV VQF+ DEEE + EV +E+ D+D EG EA TL L LHPR +DA+WLQR+L++FY+D VS+ K++EVLE+LKTASD+R+ EN++VLLLG + F IK++R++R MILYCTLLA+ ++ E++ + M +DPEL++ L QL E EDL+ E+ R+ R+S++D DL ++ D+ A R++LDLEDL F GSH MANK+CQLPDGSFR+QRKGYEEVHVPALKPKP +E + + LPKYAQA FEG++ LNRIQS+L +AL++DEN+LLCAPTGAGKTNVA++ +LREI KHIN+DGTIN +FK+IYIAPMRSLVQEMV +FGKRL +YG+ V+ELTGDHQL KE+I ATQ+IVCTPEKWDIITRK G+RTYTQLVRLII+DEIHLLHD+RGPVLEA++AR IR IE TQE VRL+GLSATLPNYEDVA F+RV+ KGLF+FDNSFRPVPLEQ YVG+TEKKAIKRFQ+MNE+VY+K +E AGK+QVLVFVHSRKETGKTARA+RD CLE+DTLG FLRE SAS E+LRTEAEQ KNLELKDLLPYGFAIHHAGM+RVDR LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQ+YSPEKG+W ELGALDILQM GRAGRPQYDTKGEGILIT+H ELQYYLSLLNQQLP+ESQM+ L D LNAEIV G + N KDA WLGY YLY+RMLR+PTLYG+SHDDL+ D LL+QRR+DL+HTAA +LDKN LVKYD+KTG Q TELGRIASHYYIT+D++ TYN+LLKPTLSEIELFRVFSLSSEFK I VREEEK+ELQ+L+ERVPIPVKESIEEPSAKINVLLQA+ISQLKLEGFAL ADMVYVTQSAGRLMRAIFEIVL+RGWAQLTD+ LNLCKM+DKRMW SM PLRQF+K+P EV KK+EKK+FP+ERLYDL HNEIGELI PKMGK IHK+VH FPK+EL H+QPITR+TL VELTITPDFQWDEK+HG+S+AFW+ VEDVD E ILH EYFLLKAKYA DEH++ FFVPVFEPLPPQYFIRVVSDRWL ETQLPVSFRHL LPEK PPTELLDLQPLPVSALRN FE+LYQDKFP+FNPIQTQVFN +Y+SDDN+F+GAPTGSGKTICAEFAIL +LLQ + RCVY+TP+++LAEQV+ DW KF L K VVLLTGETS DLKLL KGNIIISTP+KWD+LSRRWKQRKNVQN+NLF++DE HLIGGENGPV+EVICSRMRYISSQIE+ IRIVALSSSL+NAKDVA WLG S + FNFHPNVRPVPLELHIQGFNI+H +RL++M KP Y AI + SP+KPVIVFVPSRKQ+++TA+D+L+ C A+ Q QRFLHCTE+DL P+L+++S+ TLKETL GVGYLHEGL+ ME ++VEQLFSSGA+QV+V SR+LCW ++ A LVIIMDT +Y GKIH Y+DYP+ DVLQM+G ANRPL DD G+ VI+C SKK+F+KKFLYEPLP+ESHLDHC+HDHFNAE+VTKTI NKQDAVDYLTWTFLYRRMTQNPNYYNLQG+SHRHLSDH+SELVE TLSDLEQSKC+SIEDEM+V+PLNLGMIAAYYYINYTTIELFS+SL+AKTK++GLIEIIS+A EYEN+PIR HED +L+QL+ +VP+K+ N KF DPHVKTNLL+QAHLSRMQLSAE+QSDTE IL KA+RLIQACVDVLSSNGWLSPA+ AMELAQMVTQAMWSKDSYLKQ+PHF+++ +KRC +K VESVFDIM++ED+ RN LL L+D Q+ DVA+FCNRYPNI+LSYEV DKDS+ SG PVVV V LERE++ GPVIAP FPQKREEGWW+VIGD K+NSLISIKRLTLQQKAKVKLDF+AP++G H Y LY+MSD YMGCDQEY + V E
Sbjct: 1 MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP-----QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129 The following BLAST results are available for this feature:
BLAST of TCONS_00072803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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