TCONS_00072786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072786
Unique NameTCONS_00072786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=transcript|length=1698bp
tttaattctaagggcaaaacattaatttttgcacaaagtgaaaaatgtgt
cacagagaaataatcttttttagctttttgtgtaaaatcagtccgaaaag
caaccaaaaaataggtggtctttatgacaaattgtcccaaaaacttttac
taccagggtagtaaaatacctcttccaagagtNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTTCacattttccaagtttttccCTGACGGAAAGATTCCT
CACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGA
TTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTG
TAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGactaca
acaacgacaacaacgaccactACTCCTACGACTACGACCGTTCCTGAAAC
GACAACGACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGG
CCATTCCTaaaacaacaacgaccactcctgAAACAACTACAATTTCAGAA
ACAACTGNCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTTCac
attttccaagtttttccCTGACGGAAAGATTCCTCACGCTGCCACCAAAA
CAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATTTATCTC
GGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAACAAATT
CTATAAATGTCCACCTAAAATGACAACGactacaacaacgacaacaacga
ccactACGACTACGACTACGACCGTTCCTGAAACGACCACGACCGTGCAA
TCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTaaaacaac
aacgaccactcctgAAACAACTACAATTTCAGAAACAACTGCACCGAAAA
CAACAATCAAGCGAGTCGAAACTAAAACTCAATCAACATCTACCACAACG
CCATTATTAAAAACATTCTCAACGACTCCTACTGACAAAATTCTCGTTAA
AACGAATCTTAGCACGACAGTTTCTACGAAAACGGAAACAAAACCGAAAA
CTGTAGAAACAATAACTACTCAATCACCAACTAAACCGTTTTTCAGGACA
GTAATATTTGATAACGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGC
AGGCTCGACTCATTTAGTCCCAAACCTGTCACTAACTTTTATACTAACGT
CGATCGTTGGTTTCTTGGTAGCTCTAATGTTATAGGACCATTAATGTGGC
TACATATTtatagattttgattttgagtacCAACACTACAGTTGACTTCA
AAAGCAAACAATTTGTCTTGAAAGTATTCTAAAAGTTTTTATCgcaagat
ttttattttattgattgtATAGTAAATGAAATATGATTTTAAGGCTCAGG
TTGAGCTGAATTTGACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAG
CGATGCACGCTGCCTATTTCATTTCAACAGTAGAAAGAATTTTCACCCTT
TTTCAAAAAGGCCCGCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAA
AAGGGAGGCGTGACGGTGTAAAAATGTTAAGACCATGGTAAAAATGGG
Run BLAST on NCBI

protein sequence of TCONS_00072786-protein

>TCONS_00072786-protein ID=TCONS_00072786-protein|Name=TCONS_00072786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MTNCPKNFYYQGSKIPLPRXYHKGSSGEASTQNLPYDFASVMHYNRFTFS
KFFPDGKIPHAATKTKDFMTIYAKKDWTIYLGNQKGMSELDIVRVNKFYK
CPPKMTTTTTTTTTTTTPTTTTVPETTTTVLSTTTTTPVITTAIPKTTTT
TPETTTISETTXPYDFASVMHYNRFTFSKFFPDGKIPHAATKTKDFMTIY
AKKDWTIYLGNQKGMSELDIVRVNKFYKCPPKMTTTTTTTTTTTTTTTTT
VPETTTTVQSTTTTTPVITTAIPKTTTTTPETTTISETTAPKTTIKRVET
KTQSTSTTTPLLKTFSTTPTDKILVKTNLSTTVSTKTETKPKTVETITTQ
SPTKPFFRTVIFDNETYFVNEFGLPAGSTHLVPNLSLTFILTSIVGFLVA
LML
Run BLAST on NCBI

transcript from alignment at scaffold_84:103931..106314-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=transcript|length=2384bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
TTTAATTCTAAGGGCAAAACATTAATTTTTGCACAAAGTGAAAAATGTGT CACAGAGAAATAATCTTTTTTAGCTTTTTGTGTAAAATCAGTCCGAAAAG CAACCAAAAAATAGGTGGTCTTTATGACAAATTGTCCCAAAAACTTTTAC TACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCCAG TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC ATTACAATAGGTAAGTTTCATCCTTCAAACTATAAATAGTGCAGCCTAAA TGTGCCAAAAGTCATTAACATTGTGCACAATTTTTACACAATTAGACCGT ACTAAAAGTGATGACCAAACTAATGGAGTCTTGTCTAATTCATAATCTCT TTAATAAATGACACTTGATTAAATGACTGTTTGTTAAAATCTCTAAACCG GGAAATTTTTTCTTGATTATTTAAAAGCAAATAATTTTGGCTTCAAAATT TATCACAATATTTCAAATTTAAATTTTGAAGATAAGCTAAGTTAGATATC TAGAGCTTCGTTGAAAAGTATTAATGTAACACTAAATTTCAATGTCATTT CAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTAAGTTTCATCC TTCAAACTATAAATAGTGCAGCCTAAATGTGCCAAAAGTCATTAATATTG TGCACAATTTTTACACAATTAGACCGTACTAAAAGTGATGACCAAACTAA TGGAGTCTTGTCTAATTCATAATCTCTTTAATAAATGACACTTGATTAAA TGACTGTTTGTTAAAATCTCTAAACCGGGAAATTTTGTCTTGATTATTTA AAAGCAAATAATTTTGGCTTCAAAATTTATCACAATATTTCAAATTTAAA TTTTGAAGATAAGCTAAGTTAGATATCTAGAGCTTCGTTGAAAAGTATTA ATGTAACACTAAATTTCAATGTCATTTCAGGTTCACATTTTCCAAGTTTT TCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATG ACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGG TATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCAC CTAAAATGACAACGACTACAACAACGACAACAACGACCACTACGACTACG ACTACGACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGAC CACCCCAGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTG AAACAACTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGA GTCGAAACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAAC ATTCTCAACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCA CGACAGTTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATA ACTACTCAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAA CGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATT TAGTCCCAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTC TTGGTAGCTCTAATGTTATAGGACCATTAATGTGGCTACATATTTATAGA TTTTGATTTTGAGTACCAACACTACAGTTGACTTCAAAAGCAAACAATTT GTCTTGAAAGTATTCTAAAAGTTTTTATCGCAAGATTTTTATTTTATTGA TTGTATAGTAAATGAAATATGATTTTAAGGCTCAGGTTGAGCTGAATTTG ACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAGCGATGCACGCTGCC TATTTCATTTCAACAGTAGAAAGAATTTTCACCCTTTTTCAAAAAGGCCC GCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAAAAGGGAGGCGTGAC GGTGTAAAAATGTTAAGACCATGGTAAAAATGGG

Coding sequence (CDS) from alignment at scaffold_84:103931..106314-

>TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
GTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTGCCA
CCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATT
TATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAA
CAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGACAA
CAACGACCACTACGACTACGACTACGACCGTTCCTGAAACGACCACGACC
GTGCAATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTAA
AACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTGCAC
CGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAATCAACATCTACC
ACAACGCCATTATTAAAAACATTCTCAACGACTCCTACTGACAAAATTCT
CGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAACGGAAACAAAAC
CGAAAACTGTAGAAACAATAACTACTCAATCACCAACTAAACCGTTTTTC
AGGACAGTAATATTTGATAACGAAACTTATTTTGTCAACGAATTTGGTCT
GCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCACTAACTTTTATAC
TAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTATAGGTTCACATT
TTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAA
AAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGT
AATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTA
TAAATGTCCACCTAAAATGACAACGACTACAACAACGACAACAACGACCA
CTACTCCTACGACTACGACCGTTCCTGAAACGACAACGACCGTGCTATCA
ACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTAAAACAACAAC
GACCACTCCTGAAACAACTACAATTTCAGAAACAACTGNCCCTTATGATT
TTGCAAGTGTTATGCATTACAATAGATGACAAATTGTCCCAAAAACTTTT
ACTACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCC
AGTGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTAT
GCATTACAATAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTC
CTCACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAA
GATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATAT
TGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTA
CAACAACGACAACAACGACCACTACGACTACGACTACGACCGTTCCTGAA
ACGACCACGACCGTGCAATCAACTACTACGACCACCCCAGTTATTACTAC
GGCCATTCCTAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAG
AAACAACTGCACCGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAA
TCAACATCTACCACAACGCCATTATTAAAAACATTCTCAACGACTCCTAC
TGACAAAATTCTCGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAA
CGGAAACAAAACCGAAAACTGTAGAAACAATAACTACTCAATCACCAACT
AAACCGTTTTTCAGGACAGTAATATTTGATAACGAAACTTATTTTGTCAA
CGAATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCAC
TAACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTA
TAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG
CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT
ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT
CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA
CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG
ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC
TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG
NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGATGACAAATTGTC
CCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTAC
CATAAAGGATCCAGTGGAGAAGCAAGCACACAAAATCTTCCTTATGATTT
TGCAAGTGTTATGCATTACAATAGGTTCACATTTTCCAAGTTTTTCCCTG
ACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATGACAATC
TACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTC
TGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAA
TGACAACGACTACAACAACGACAACAACGACCACTACGACTACGACTACG
ACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGACCACCCC
AGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTGAAACAA
CTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGAGTCGAA
ACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAACATTCTC
AACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCACGACAG
TTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATAACTACT
CAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAACGAAAC
TTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCC
CAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTA
GCTCTAATGTTATAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGA
TTCCTCACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAA
AAAGATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGA
TATTGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGA
CTACAACAACGACAACAACGACCACTACTCCTACGACTACGACCGTTCCT
GAAACGACAACGACCGTGCTATCAACTACTACGACCACCCCAGTTATTAC
TACGGCCATTCCTAAAACAACAACGACCACTCCTGAAACAACTACAATTT
CAGAAACAACTGNCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGA
TGACAAATTGTCCCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTT
CCAAGAGTNTACCATAAAGGATCCAGTGGAGAAGCAAGCACACAAAATCT
TCCTTATGATTTTGCAAGTGTTATGCATTACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045180XLOC_045180Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072786-proteinTCONS_00072786-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072786-exon-scaffold_84-1575043694:106055..106314TCONS_00072786-exon-scaffold_84-1575043694:106055..106314Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1575043694:105328..105711TCONS_00072786-exon-scaffold_84-1575043694:105328..105711Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1575043694:103931..104984TCONS_00072786-exon-scaffold_84-1575043694:103931..104984Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1510915933:106055..106314TCONS_00072786-exon-scaffold_84-1510915933:106055..106314Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1510915933:105328..105711TCONS_00072786-exon-scaffold_84-1510915933:105328..105711Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1510915933:103931..104984TCONS_00072786-exon-scaffold_84-1510915933:103931..104984Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1491911889:106055..106314TCONS_00072786-exon-scaffold_84-1491911889:106055..106314Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1491911889:105328..105711TCONS_00072786-exon-scaffold_84-1491911889:105328..105711Clytia hemisphaericaexon
TCONS_00072786-exon-scaffold_84-1491911889:103931..104984TCONS_00072786-exon-scaffold_84-1491911889:103931..104984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:103931..106314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.9239 0.360379 0.410777 0 0.996744 0.59073 2.49442 1.89044 0.233566 0.675054 0.187207 0.553781 5.83734 2.99916 10.9646 5.57368 0.832281 3.12789 0 0.41109 0 0 0.529663 0.192616 0 0 0 0 0 0.208956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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