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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=transcript|length=1698bp
tttaattctaagggcaaaacattaatttttgcacaaagtgaaaaatgtgt
cacagagaaataatcttttttagctttttgtgtaaaatcagtccgaaaag
caaccaaaaaataggtggtctttatgacaaattgtcccaaaaacttttac
taccagggtagtaaaatacctcttccaagagtNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTTCacattttccaagtttttccCTGACGGAAAGATTCCT
CACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGA
TTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTG
TAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGactaca
acaacgacaacaacgaccactACTCCTACGACTACGACCGTTCCTGAAAC
GACAACGACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGG
CCATTCCTaaaacaacaacgaccactcctgAAACAACTACAATTTCAGAA
ACAACTGNCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTTCac
attttccaagtttttccCTGACGGAAAGATTCCTCACGCTGCCACCAAAA
CAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATTTATCTC
GGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAACAAATT
CTATAAATGTCCACCTAAAATGACAACGactacaacaacgacaacaacga
ccactACGACTACGACTACGACCGTTCCTGAAACGACCACGACCGTGCAA
TCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTaaaacaac
aacgaccactcctgAAACAACTACAATTTCAGAAACAACTGCACCGAAAA
CAACAATCAAGCGAGTCGAAACTAAAACTCAATCAACATCTACCACAACG
CCATTATTAAAAACATTCTCAACGACTCCTACTGACAAAATTCTCGTTAA
AACGAATCTTAGCACGACAGTTTCTACGAAAACGGAAACAAAACCGAAAA
CTGTAGAAACAATAACTACTCAATCACCAACTAAACCGTTTTTCAGGACA
GTAATATTTGATAACGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGC
AGGCTCGACTCATTTAGTCCCAAACCTGTCACTAACTTTTATACTAACGT
CGATCGTTGGTTTCTTGGTAGCTCTAATGTTATAGGACCATTAATGTGGC
TACATATTtatagattttgattttgagtacCAACACTACAGTTGACTTCA
AAAGCAAACAATTTGTCTTGAAAGTATTCTAAAAGTTTTTATCgcaagat
ttttattttattgattgtATAGTAAATGAAATATGATTTTAAGGCTCAGG
TTGAGCTGAATTTGACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAG
CGATGCACGCTGCCTATTTCATTTCAACAGTAGAAAGAATTTTCACCCTT
TTTCAAAAAGGCCCGCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAA
AAGGGAGGCGTGACGGTGTAAAAATGTTAAGACCATGGTAAAAATGGG Run BLAST on NCBI protein sequence of TCONS_00072786-protein >TCONS_00072786-protein ID=TCONS_00072786-protein|Name=TCONS_00072786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MTNCPKNFYYQGSKIPLPRXYHKGSSGEASTQNLPYDFASVMHYNRFTFS
KFFPDGKIPHAATKTKDFMTIYAKKDWTIYLGNQKGMSELDIVRVNKFYK
CPPKMTTTTTTTTTTTTPTTTTVPETTTTVLSTTTTTPVITTAIPKTTTT
TPETTTISETTXPYDFASVMHYNRFTFSKFFPDGKIPHAATKTKDFMTIY
AKKDWTIYLGNQKGMSELDIVRVNKFYKCPPKMTTTTTTTTTTTTTTTTT
VPETTTTVQSTTTTTPVITTAIPKTTTTTPETTTISETTAPKTTIKRVET
KTQSTSTTTPLLKTFSTTPTDKILVKTNLSTTVSTKTETKPKTVETITTQ
SPTKPFFRTVIFDNETYFVNEFGLPAGSTHLVPNLSLTFILTSIVGFLVA
LML Run BLAST on NCBI transcript from alignment at scaffold_84:103931..106314- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=transcript|length=2384bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
TTTAATTCTAAGGGCAAAACATTAATTTTTGCACAAAGTGAAAAATGTGT
CACAGAGAAATAATCTTTTTTAGCTTTTTGTGTAAAATCAGTCCGAAAAG
CAACCAAAAAATAGGTGGTCTTTATGACAAATTGTCCCAAAAACTTTTAC
TACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTAAGTTTCATCCTTCAAACTATAAATAGTGCAGCCTAAA
TGTGCCAAAAGTCATTAACATTGTGCACAATTTTTACACAATTAGACCGT
ACTAAAAGTGATGACCAAACTAATGGAGTCTTGTCTAATTCATAATCTCT
TTAATAAATGACACTTGATTAAATGACTGTTTGTTAAAATCTCTAAACCG
GGAAATTTTTTCTTGATTATTTAAAAGCAAATAATTTTGGCTTCAAAATT
TATCACAATATTTCAAATTTAAATTTTGAAGATAAGCTAAGTTAGATATC
TAGAGCTTCGTTGAAAAGTATTAATGTAACACTAAATTTCAATGTCATTT
CAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG
CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT
ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT
CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA
CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG
ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC
TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG
NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTAAGTTTCATCC
TTCAAACTATAAATAGTGCAGCCTAAATGTGCCAAAAGTCATTAATATTG
TGCACAATTTTTACACAATTAGACCGTACTAAAAGTGATGACCAAACTAA
TGGAGTCTTGTCTAATTCATAATCTCTTTAATAAATGACACTTGATTAAA
TGACTGTTTGTTAAAATCTCTAAACCGGGAAATTTTGTCTTGATTATTTA
AAAGCAAATAATTTTGGCTTCAAAATTTATCACAATATTTCAAATTTAAA
TTTTGAAGATAAGCTAAGTTAGATATCTAGAGCTTCGTTGAAAAGTATTA
ATGTAACACTAAATTTCAATGTCATTTCAGGTTCACATTTTCCAAGTTTT
TCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATG
ACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGG
TATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCAC
CTAAAATGACAACGACTACAACAACGACAACAACGACCACTACGACTACG
ACTACGACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGAC
CACCCCAGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTG
AAACAACTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGA
GTCGAAACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAAC
ATTCTCAACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCA
CGACAGTTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATA
ACTACTCAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAA
CGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATT
TAGTCCCAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTC
TTGGTAGCTCTAATGTTATAGGACCATTAATGTGGCTACATATTTATAGA
TTTTGATTTTGAGTACCAACACTACAGTTGACTTCAAAAGCAAACAATTT
GTCTTGAAAGTATTCTAAAAGTTTTTATCGCAAGATTTTTATTTTATTGA
TTGTATAGTAAATGAAATATGATTTTAAGGCTCAGGTTGAGCTGAATTTG
ACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAGCGATGCACGCTGCC
TATTTCATTTCAACAGTAGAAAGAATTTTCACCCTTTTTCAAAAAGGCCC
GCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAAAAGGGAGGCGTGAC
GGTGTAAAAATGTTAAGACCATGGTAAAAATGGG Coding sequence (CDS) from alignment at scaffold_84:103931..106314- >TCONS_00072786 ID=TCONS_00072786|Name=TCONS_00072786|organism=Clytia hemisphaerica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
GTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTGCCA
CCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATT
TATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAA
CAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGACAA
CAACGACCACTACGACTACGACTACGACCGTTCCTGAAACGACCACGACC
GTGCAATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTAA
AACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTGCAC
CGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAATCAACATCTACC
ACAACGCCATTATTAAAAACATTCTCAACGACTCCTACTGACAAAATTCT
CGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAACGGAAACAAAAC
CGAAAACTGTAGAAACAATAACTACTCAATCACCAACTAAACCGTTTTTC
AGGACAGTAATATTTGATAACGAAACTTATTTTGTCAACGAATTTGGTCT
GCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCACTAACTTTTATAC
TAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTATAGGTTCACATT
TTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAA
AAGATTTCATGACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGT
AATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTA
TAAATGTCCACCTAAAATGACAACGACTACAACAACGACAACAACGACCA
CTACTCCTACGACTACGACCGTTCCTGAAACGACAACGACCGTGCTATCA
ACTACTACGACCACCCCAGTTATTACTACGGCCATTCCTAAAACAACAAC
GACCACTCCTGAAACAACTACAATTTCAGAAACAACTGNCCCTTATGATT
TTGCAAGTGTTATGCATTACAATAGATGACAAATTGTCCCAAAAACTTTT
ACTACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCC
AGTGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTAT
GCATTACAATAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTC
CTCACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAA
GATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATAT
TGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTA
CAACAACGACAACAACGACCACTACGACTACGACTACGACCGTTCCTGAA
ACGACCACGACCGTGCAATCAACTACTACGACCACCCCAGTTATTACTAC
GGCCATTCCTAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAG
AAACAACTGCACCGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAA
TCAACATCTACCACAACGCCATTATTAAAAACATTCTCAACGACTCCTAC
TGACAAAATTCTCGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAA
CGGAAACAAAACCGAAAACTGTAGAAACAATAACTACTCAATCACCAACT
AAACCGTTTTTCAGGACAGTAATATTTGATAACGAAACTTATTTTGTCAA
CGAATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCAC
TAACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTA
TAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG
CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT
ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT
CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA
CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG
ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC
TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG
NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGATGACAAATTGTC
CCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTAC
CATAAAGGATCCAGTGGAGAAGCAAGCACACAAAATCTTCCTTATGATTT
TGCAAGTGTTATGCATTACAATAGGTTCACATTTTCCAAGTTTTTCCCTG
ACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATGACAATC
TACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTC
TGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAA
TGACAACGACTACAACAACGACAACAACGACCACTACGACTACGACTACG
ACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGACCACCCC
AGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTGAAACAA
CTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGAGTCGAA
ACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAACATTCTC
AACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCACGACAG
TTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATAACTACT
CAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAACGAAAC
TTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCC
CAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTA
GCTCTAATGTTATAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGA
TTCCTCACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAA
AAAGATTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGA
TATTGTAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGA
CTACAACAACGACAACAACGACCACTACTCCTACGACTACGACCGTTCCT
GAAACGACAACGACCGTGCTATCAACTACTACGACCACCCCAGTTATTAC
TACGGCCATTCCTAAAACAACAACGACCACTCCTGAAACAACTACAATTT
CAGAAACAACTGNCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGA
TGACAAATTGTCCCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTT
CCAAGAGTNTACCATAAAGGATCCAGTGGAGAAGCAAGCACACAAAATCT
TCCTTATGATTTTGCAAGTGTTATGCATTACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00072786-exon-scaffold_84-1575043694:106055..106314 | TCONS_00072786-exon-scaffold_84-1575043694:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1575043694:105328..105711 | TCONS_00072786-exon-scaffold_84-1575043694:105328..105711 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1575043694:103931..104984 | TCONS_00072786-exon-scaffold_84-1575043694:103931..104984 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1510915933:106055..106314 | TCONS_00072786-exon-scaffold_84-1510915933:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1510915933:105328..105711 | TCONS_00072786-exon-scaffold_84-1510915933:105328..105711 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1510915933:103931..104984 | TCONS_00072786-exon-scaffold_84-1510915933:103931..104984 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1491911889:106055..106314 | TCONS_00072786-exon-scaffold_84-1491911889:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1491911889:105328..105711 | TCONS_00072786-exon-scaffold_84-1491911889:105328..105711 | Clytia hemisphaerica | exon |
| TCONS_00072786-exon-scaffold_84-1491911889:103931..104984 | TCONS_00072786-exon-scaffold_84-1491911889:103931..104984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_84 | supercontig | scaffold_84:103931..106314 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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