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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072785 ID=TCONS_00072785|Name=TCONS_00072785|organism=Clytia hemisphaerica|type=transcript|length=1314bp
tttaattctaagggcaaaacattaatttttgcacaaagtgaaaaatgtgt
cacagagaaataatcttttttagctttttgtgtaaaatcagtccgaaaag
caaccaaaaaataggtggtctttatgacaaattgtcccaaaaacttttac
taccagggtagtaaaatacctcttccaagagtNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTTCacattttccaagtttttccCTGACGGAAAGATTCCT
CACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGA
TTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTG
TAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGactaca
acaacgacaacaacgaccactACGACTACGACTACGACCGTTCCTGAAAC
GACCACGACCGTGCAATCAACTACTACGACCACCCCAGTTATTACTACGG
CCATTCCTaaaacaacaacgaccactcctgAAACAACTACAATTTCAGAA
ACAACTGCACCGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAATC
AACATCTACCACAACGCCATTATTAAAAACATTCTCAACGACTCCTACTG
ACAAAATTCTCGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAACG
GAAACAAAACCGAAAACTGTAGAAACAATAACTACTCAATCACCAACTAA
ACCGTTTTTCAGGACAGTAATATTTGATAACGAAACTTATTTTGTCAACG
AATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCACTA
ACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTATA
GGACCATTAATGTGGCTACATATTtatagattttgattttgagtacCAAC
ACTACAGTTGACTTCAAAAGCAAACAATTTGTCTTGAAAGTATTCTAAAA
GTTTTTATCgcaagatttttattttattgattgtATAGTAAATGAAATAT
GATTTTAAGGCTCAGGTTGAGCTGAATTTGACATTGGCCTTCCATGACTT
CTTCAAGGTTTTTTAGCGATGCACGCTGCCTATTTCATTTCAACAGTAGA
AAGAATTTTCACCCTTTTTCAAAAAGGCCCGCTAATTCACTCCGACAAAA
CTTTGTTTAAGGGTAAAAGGGAGGCGTGACGGTGTAAAAATGTTAAGACC
ATGGTAAAAATGGG Run BLAST on NCBI transcript from alignment at scaffold_84:103931..106314- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072785 ID=TCONS_00072785|Name=TCONS_00072785|organism=Clytia hemisphaerica|type=transcript|length=2384bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
TTTAATTCTAAGGGCAAAACATTAATTTTTGCACAAAGTGAAAAATGTGT
CACAGAGAAATAATCTTTTTTAGCTTTTTGTGTAAAATCAGTCCGAAAAG
CAACCAAAAAATAGGTGGTCTTTATGACAAATTGTCCCAAAAACTTTTAC
TACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTAAGTTTCATCCTTCAAACTATAAATAGTGCAGCCTAAA
TGTGCCAAAAGTCATTAACATTGTGCACAATTTTTACACAATTAGACCGT
ACTAAAAGTGATGACCAAACTAATGGAGTCTTGTCTAATTCATAATCTCT
TTAATAAATGACACTTGATTAAATGACTGTTTGTTAAAATCTCTAAACCG
GGAAATTTTTTCTTGATTATTTAAAAGCAAATAATTTTGGCTTCAAAATT
TATCACAATATTTCAAATTTAAATTTTGAAGATAAGCTAAGTTAGATATC
TAGAGCTTCGTTGAAAAGTATTAATGTAACACTAAATTTCAATGTCATTT
CAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG
CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT
ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT
CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA
CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG
ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC
TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG
NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTAAGTTTCATCC
TTCAAACTATAAATAGTGCAGCCTAAATGTGCCAAAAGTCATTAATATTG
TGCACAATTTTTACACAATTAGACCGTACTAAAAGTGATGACCAAACTAA
TGGAGTCTTGTCTAATTCATAATCTCTTTAATAAATGACACTTGATTAAA
TGACTGTTTGTTAAAATCTCTAAACCGGGAAATTTTGTCTTGATTATTTA
AAAGCAAATAATTTTGGCTTCAAAATTTATCACAATATTTCAAATTTAAA
TTTTGAAGATAAGCTAAGTTAGATATCTAGAGCTTCGTTGAAAAGTATTA
ATGTAACACTAAATTTCAATGTCATTTCAGGTTCACATTTTCCAAGTTTT
TCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATG
ACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGG
TATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCAC
CTAAAATGACAACGACTACAACAACGACAACAACGACCACTACGACTACG
ACTACGACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGAC
CACCCCAGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTG
AAACAACTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGA
GTCGAAACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAAC
ATTCTCAACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCA
CGACAGTTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATA
ACTACTCAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAA
CGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATT
TAGTCCCAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTC
TTGGTAGCTCTAATGTTATAGGACCATTAATGTGGCTACATATTTATAGA
TTTTGATTTTGAGTACCAACACTACAGTTGACTTCAAAAGCAAACAATTT
GTCTTGAAAGTATTCTAAAAGTTTTTATCGCAAGATTTTTATTTTATTGA
TTGTATAGTAAATGAAATATGATTTTAAGGCTCAGGTTGAGCTGAATTTG
ACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAGCGATGCACGCTGCC
TATTTCATTTCAACAGTAGAAAGAATTTTCACCCTTTTTCAAAAAGGCCC
GCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAAAAGGGAGGCGTGAC
GGTGTAAAAATGTTAAGACCATGGTAAAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072785-exon-scaffold_84-1575043694:106055..106314 | TCONS_00072785-exon-scaffold_84-1575043694:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072785-exon-scaffold_84-1575043694:103931..104984 | TCONS_00072785-exon-scaffold_84-1575043694:103931..104984 | Clytia hemisphaerica | exon |
| TCONS_00072785-exon-scaffold_84-1510915933:106055..106314 | TCONS_00072785-exon-scaffold_84-1510915933:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072785-exon-scaffold_84-1510915933:103931..104984 | TCONS_00072785-exon-scaffold_84-1510915933:103931..104984 | Clytia hemisphaerica | exon |
| TCONS_00072785-exon-scaffold_84-1491911889:106055..106314 | TCONS_00072785-exon-scaffold_84-1491911889:106055..106314 | Clytia hemisphaerica | exon |
| TCONS_00072785-exon-scaffold_84-1491911889:103931..104984 | TCONS_00072785-exon-scaffold_84-1491911889:103931..104984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_84 | supercontig | scaffold_84:103931..106314 - |
Blast
The following BLAST results are available for this feature:
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