TCONS_00072785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072785
Unique NameTCONS_00072785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072785 ID=TCONS_00072785|Name=TCONS_00072785|organism=Clytia hemisphaerica|type=transcript|length=1314bp
tttaattctaagggcaaaacattaatttttgcacaaagtgaaaaatgtgt
cacagagaaataatcttttttagctttttgtgtaaaatcagtccgaaaag
caaccaaaaaataggtggtctttatgacaaattgtcccaaaaacttttac
taccagggtagtaaaatacctcttccaagagtNTACCATAAAGGATCCAG
TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC
ATTACAATAGGTTCacattttccaagtttttccCTGACGGAAAGATTCCT
CACGCTGCCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGA
TTGGACTATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTG
TAAGAGTCAACAAATTCTATAAATGTCCACCTAAAATGACAACGactaca
acaacgacaacaacgaccactACGACTACGACTACGACCGTTCCTGAAAC
GACCACGACCGTGCAATCAACTACTACGACCACCCCAGTTATTACTACGG
CCATTCCTaaaacaacaacgaccactcctgAAACAACTACAATTTCAGAA
ACAACTGCACCGAAAACAACAATCAAGCGAGTCGAAACTAAAACTCAATC
AACATCTACCACAACGCCATTATTAAAAACATTCTCAACGACTCCTACTG
ACAAAATTCTCGTTAAAACGAATCTTAGCACGACAGTTTCTACGAAAACG
GAAACAAAACCGAAAACTGTAGAAACAATAACTACTCAATCACCAACTAA
ACCGTTTTTCAGGACAGTAATATTTGATAACGAAACTTATTTTGTCAACG
AATTTGGTCTGCCCGCAGGCTCGACTCATTTAGTCCCAAACCTGTCACTA
ACTTTTATACTAACGTCGATCGTTGGTTTCTTGGTAGCTCTAATGTTATA
GGACCATTAATGTGGCTACATATTtatagattttgattttgagtacCAAC
ACTACAGTTGACTTCAAAAGCAAACAATTTGTCTTGAAAGTATTCTAAAA
GTTTTTATCgcaagatttttattttattgattgtATAGTAAATGAAATAT
GATTTTAAGGCTCAGGTTGAGCTGAATTTGACATTGGCCTTCCATGACTT
CTTCAAGGTTTTTTAGCGATGCACGCTGCCTATTTCATTTCAACAGTAGA
AAGAATTTTCACCCTTTTTCAAAAAGGCCCGCTAATTCACTCCGACAAAA
CTTTGTTTAAGGGTAAAAGGGAGGCGTGACGGTGTAAAAATGTTAAGACC
ATGGTAAAAATGGG
Run BLAST on NCBI

transcript from alignment at scaffold_84:103931..106314-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072785 ID=TCONS_00072785|Name=TCONS_00072785|organism=Clytia hemisphaerica|type=transcript|length=2384bp|location=Sequence derived from alignment at scaffold_84:103931..106314- (Clytia hemisphaerica)
TTTAATTCTAAGGGCAAAACATTAATTTTTGCACAAAGTGAAAAATGTGT CACAGAGAAATAATCTTTTTTAGCTTTTTGTGTAAAATCAGTCCGAAAAG CAACCAAAAAATAGGTGGTCTTTATGACAAATTGTCCCAAAAACTTTTAC TACCAGGGTAGTAAAATACCTCTTCCAAGAGTNTACCATAAAGGATCCAG TGGAGAAGCAAGCACACAAAATCTTCCTTATGATTTTGCAAGTGTTATGC ATTACAATAGGTAAGTTTCATCCTTCAAACTATAAATAGTGCAGCCTAAA TGTGCCAAAAGTCATTAACATTGTGCACAATTTTTACACAATTAGACCGT ACTAAAAGTGATGACCAAACTAATGGAGTCTTGTCTAATTCATAATCTCT TTAATAAATGACACTTGATTAAATGACTGTTTGTTAAAATCTCTAAACCG GGAAATTTTTTCTTGATTATTTAAAAGCAAATAATTTTGGCTTCAAAATT TATCACAATATTTCAAATTTAAATTTTGAAGATAAGCTAAGTTAGATATC TAGAGCTTCGTTGAAAAGTATTAATGTAACACTAAATTTCAATGTCATTT CAGGTTCACATTTTCCAAGTTTTTCCCTGACGGAAAGATTCCTCACGCTG CCACCAAAACAAAAGATTTCATGACAATCTACGCCAAAAAAGATTGGACT ATTTATCTCGGTAATCAAAAAGGTATGTCTGAGCTTGATATTGTAAGAGT CAACAAATTCTATAAATGTCCACCTAAAATGACAACGACTACAACAACGA CAACAACGACCACTACTCCTACGACTACGACCGTTCCTGAAACGACAACG ACCGTGCTATCAACTACTACGACCACCCCAGTTATTACTACGGCCATTCC TAAAACAACAACGACCACTCCTGAAACAACTACAATTTCAGAAACAACTG NCCCTTATGATTTTGCAAGTGTTATGCATTACAATAGGTAAGTTTCATCC TTCAAACTATAAATAGTGCAGCCTAAATGTGCCAAAAGTCATTAATATTG TGCACAATTTTTACACAATTAGACCGTACTAAAAGTGATGACCAAACTAA TGGAGTCTTGTCTAATTCATAATCTCTTTAATAAATGACACTTGATTAAA TGACTGTTTGTTAAAATCTCTAAACCGGGAAATTTTGTCTTGATTATTTA AAAGCAAATAATTTTGGCTTCAAAATTTATCACAATATTTCAAATTTAAA TTTTGAAGATAAGCTAAGTTAGATATCTAGAGCTTCGTTGAAAAGTATTA ATGTAACACTAAATTTCAATGTCATTTCAGGTTCACATTTTCCAAGTTTT TCCCTGACGGAAAGATTCCTCACGCTGCCACCAAAACAAAAGATTTCATG ACAATCTACGCCAAAAAAGATTGGACTATTTATCTCGGTAATCAAAAAGG TATGTCTGAGCTTGATATTGTAAGAGTCAACAAATTCTATAAATGTCCAC CTAAAATGACAACGACTACAACAACGACAACAACGACCACTACGACTACG ACTACGACCGTTCCTGAAACGACCACGACCGTGCAATCAACTACTACGAC CACCCCAGTTATTACTACGGCCATTCCTAAAACAACAACGACCACTCCTG AAACAACTACAATTTCAGAAACAACTGCACCGAAAACAACAATCAAGCGA GTCGAAACTAAAACTCAATCAACATCTACCACAACGCCATTATTAAAAAC ATTCTCAACGACTCCTACTGACAAAATTCTCGTTAAAACGAATCTTAGCA CGACAGTTTCTACGAAAACGGAAACAAAACCGAAAACTGTAGAAACAATA ACTACTCAATCACCAACTAAACCGTTTTTCAGGACAGTAATATTTGATAA CGAAACTTATTTTGTCAACGAATTTGGTCTGCCCGCAGGCTCGACTCATT TAGTCCCAAACCTGTCACTAACTTTTATACTAACGTCGATCGTTGGTTTC TTGGTAGCTCTAATGTTATAGGACCATTAATGTGGCTACATATTTATAGA TTTTGATTTTGAGTACCAACACTACAGTTGACTTCAAAAGCAAACAATTT GTCTTGAAAGTATTCTAAAAGTTTTTATCGCAAGATTTTTATTTTATTGA TTGTATAGTAAATGAAATATGATTTTAAGGCTCAGGTTGAGCTGAATTTG ACATTGGCCTTCCATGACTTCTTCAAGGTTTTTTAGCGATGCACGCTGCC TATTTCATTTCAACAGTAGAAAGAATTTTCACCCTTTTTCAAAAAGGCCC GCTAATTCACTCCGACAAAACTTTGTTTAAGGGTAAAAGGGAGGCGTGAC GGTGTAAAAATGTTAAGACCATGGTAAAAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045180XLOC_045180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072785-exon-scaffold_84-1575043694:106055..106314TCONS_00072785-exon-scaffold_84-1575043694:106055..106314Clytia hemisphaericaexon
TCONS_00072785-exon-scaffold_84-1575043694:103931..104984TCONS_00072785-exon-scaffold_84-1575043694:103931..104984Clytia hemisphaericaexon
TCONS_00072785-exon-scaffold_84-1510915933:106055..106314TCONS_00072785-exon-scaffold_84-1510915933:106055..106314Clytia hemisphaericaexon
TCONS_00072785-exon-scaffold_84-1510915933:103931..104984TCONS_00072785-exon-scaffold_84-1510915933:103931..104984Clytia hemisphaericaexon
TCONS_00072785-exon-scaffold_84-1491911889:106055..106314TCONS_00072785-exon-scaffold_84-1491911889:106055..106314Clytia hemisphaericaexon
TCONS_00072785-exon-scaffold_84-1491911889:103931..104984TCONS_00072785-exon-scaffold_84-1491911889:103931..104984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:103931..106314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460797 0.719889 1.27916e-06 0.541584 2.09538 1.27056 4.55928 6.81482 1.28467 2.34943 1.47598 1.65793 5.83195 3.98575 6.57194 3.78526 0.10865 2.121 0.206064 0.0190089 0.249949 0.414476 0.504415 0.452523 0.525253 0.878479 0.309823 0.236056 0.823963 0.922609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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