TCONS_00072783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072783
Unique NameTCONS_00072783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072783 ID=TCONS_00072783|Name=TCONS_00072783|organism=Clytia hemisphaerica|type=transcript|length=748bp
CAGGAAACAGAAATACTCTTAGGCTCCTTTAGAATGATATGCAAAAACAG
ACTCTGCTGAATATTGCAAAAGGACCTCCACCCACTTCATCAGCAACTGA
ATCAAACTTATCTTCTACCAACAAATCAATAAACCAGATTCCTTCTGAAG
ATAACAACACTAAACCACAAGTTGTACCAGAagttgataagaatacagtc
tcCTCTAGCAAAGACGAGGCTCCTTTCACAAGATCATCctacaaaaagaa
atcaaaacaacaatcaAACAGTGATATTGATCTAGCACAACCAGCAATAA
TGGGTTCAGGTGGCAAACTTAAAGTTAAAGTGTTGAACGGACGAAAGCTA
CAAAACAAGGAAACCTTCCAAACAAGTGATCCCTACTGTATGTTGGAGAT
TGGTGAGAAGAGTGCCAAAACAAAACATGTCTCAAGTAATTTGAATCCTG
ATTGGAatgaagattttgaatttgACGTCACCccaaataatgattttttg
acactttcaaTTTGGGATAAGAATactataaagaaggatgtcttCATGGG
CTATGCTTTCGTATCTGTTCATGATTGCAAAACAGGAGAAAATACACCGA
AGAGTGCAGATATGCTTGGAGGATGTTCCGGTACCATAAATTTGATTGTC
TCTCCACAATATGAAACATCAGCTTCACAAATTGAAAGACTCCAAAACCA
ACTCAAACAACTAGAAGGTCAAAATCAACAAAGCATGGCTGATAATGC
Run BLAST on NCBI

transcript from alignment at scaffold_84:19260..20679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072783 ID=TCONS_00072783|Name=TCONS_00072783|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_84:19260..20679- (Clytia hemisphaerica)
CAGGAAACAGAAATACTCTTAGGTTCTAATGAATTCATACATCTTCTCAA
CTTTTCTCAGTTTAAAACTTTTCACCAAATGAAGAATTTGTTTTTATTTC
TCTTAGTTAAATACTGATTTTTTAAAGACCAATTTAAAACGAATAAAGGC
TCAAATTTTTCTCATTGTTTACTCAGTTTGCCAGGCTGCTTTGTAGAAAC
ACTTTTCCTTTTTTATAATAATTCTTTTTTACAAAGATTGTGGTAAAAAT
CCATTACTTTATATTGTCTTTTTCAGGCTCCTTTAGAATGATATGCAAAA
ACAGACTCTGCTGAATATTGCAAAAGGACCTCCACCCACTTCATCAGCAA
CTGAATCAAACTTATCTTCTACCAACAAATCAATAAACCAGATTCCTTCT
GAAGATAACAACACTAAACCACAAGTTGTACCAGAAGTTGATAAGAATAC
AGTCTCCTCTAGCAAAGACGAGGTGAGTTATTTTTCTTTCTTTTCTCTTG
TTGAGGTATCAAGGTTAGTCATCTTTTCATATGTTGATCAGTAGGTCACT
TTAATAAATCTATCCTGTGAGTGCAATATATTTTTGCCAGACGAATCATT
GTAAAGTTTTAATTGGCTGGTTCTAATTTGTGTCTTGTTTCATTTTCCTT
TCATCATGGCTTGTATAAAGGCTCCTTTCACAAGATCATCCTACAAAAAG
AAATCAAAACAACAATCAAACAGTGATATTGATCTAGCACAACCAGCAAT
AATGGGTTCAGGTGGCAAACTTAAAGTTAAAGTGTTGAACGGACGAAAGC
TACAAAACAAGGAAACCTTCCAAACAAGTGATCCCTACTGTATGTTGGAG
ATTGGTGAGAAGAGTGCCAAAACAAAACATGTCTCAAGTAATTTGAATCC
TGATTGGAATGAAGATTTTGAATTTGACGTCACCCCAAATAATGATTTTT
TGACACTTTCAATTTGGGATAAGAATACTATAAAGAAGGATGTCTTCATG
GGCTATGCTTTCGTATCTGTTCATGATTGCAAAACAGGAGAAAATACACC
GAAGGTATATTAATCTACAAGATTTTTTATCAGAATCTTAAAAATATTGC
TGTCAGCTATTGCAAGGTGCAAAATTAAACTAGAGCTGTACAAAGAAAGA
TCTATTGGTCTCAACATTTTGCTGTCCTTTGATTATCAAGAAAATACTCT
TCTTTAAGTAAATTGTCTTATTTTAAAAATATTATAATTCAATATTGCAT
CTGTCTCTTACTCTTCTCTTTCAGAGTGCAGATATGCTTGGAGGATGTTC
CGGTACCATAAATTTGATTGTCTCTCCACAATATGAAACATCAGCTTCAC
AAATTGAAAGACTCCAAAACCAACTCAAACAACTAGAAGGTCAAAATCAA
CAAAGCATGGCTGATAATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045178XLOC_045178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072783-exon-scaffold_84-1575043694:20658..20679TCONS_00072783-exon-scaffold_84-1575043694:20658..20679Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1575043694:20208..20403TCONS_00072783-exon-scaffold_84-1575043694:20208..20403Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1575043694:19626..20009TCONS_00072783-exon-scaffold_84-1575043694:19626..20009Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1575043694:19260..19405TCONS_00072783-exon-scaffold_84-1575043694:19260..19405Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1510915933:20658..20679TCONS_00072783-exon-scaffold_84-1510915933:20658..20679Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1510915933:20208..20403TCONS_00072783-exon-scaffold_84-1510915933:20208..20403Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1510915933:19626..20009TCONS_00072783-exon-scaffold_84-1510915933:19626..20009Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1510915933:19260..19405TCONS_00072783-exon-scaffold_84-1510915933:19260..19405Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1491911889:20658..20679TCONS_00072783-exon-scaffold_84-1491911889:20658..20679Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1491911889:20208..20403TCONS_00072783-exon-scaffold_84-1491911889:20208..20403Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1491911889:19626..20009TCONS_00072783-exon-scaffold_84-1491911889:19626..20009Clytia hemisphaericaexon
TCONS_00072783-exon-scaffold_84-1491911889:19260..19405TCONS_00072783-exon-scaffold_84-1491911889:19260..19405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:19260..20679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.8058	99.7295	295.146	239.332	7.95265	8.87887	18.5199	18.5856	5.03641	14.884	7.71564e-06	12.0072	21.1392	21.9533	27.9801	20.0114	0	0	0	1.01719	0.00219887	0	64.2456	72.2862	0.256784	0	0	0	26.377	32.8749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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