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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072765 ID=TCONS_00072765|Name=TCONS_00072765|organism=Clytia hemisphaerica|type=transcript|length=5004bpRun BLAST on NCBI protein sequence of TCONS_00072765-protein >TCONS_00072765-protein ID=TCONS_00072765-protein|Name=TCONS_00072765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1604bp MSKKAQRTKGNAKPSSSSRAANFLNQEGKAGFIGFSGLQGNNLGYVPQVKRun BLAST on NCBI transcript from alignment at scaffold_84:33766..70315+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072765 ID=TCONS_00072765|Name=TCONS_00072765|organism=Clytia hemisphaerica|type=transcript|length=36550bp|location=Sequence derived from alignment at scaffold_84:33766..70315+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:33766..70315+ >TCONS_00072765 ID=TCONS_00072765|Name=TCONS_00072765|organism=Clytia hemisphaerica|type=CDS|length=144450bp|location=Sequence derived from alignment at scaffold_84:33766..70315+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072765 vs. Swiss-Prot (Human)
Match: LTN1 (E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1 SV=6) HSP 1 Score: 367.851 bits (943), Expect = 1.038e-103 Identity = 190/501 (37.92%), Postives = 297/501 (59.28%), Query Frame = 3
Query: 21 SKKAQRTKGNAKPSSSSRAANFLNQEGKA--GFIGFSGLQGNNLGYVPQVKGDEE---EISGDLQMLMRKMTKKDTVTKLKATQEFTELCKVKDNEAIGKILSFWPRIYHKLSHDFDHRVREATQQVHYQLVTKAGKKLAPHLKLIIVDWLMSHFDNYIPSAAIAKSAFDQAFQEKKRKDVFNFCKSEIFEAVSNQILNESPDTLSDPKVVPVEEREAKFTRYISSSFHSMSLLLKNLPEND-ETTKSHFVNLLSQKKFWKFVKHKSPMIRTSFYTFITVGCQNGDSLFTEYLSQLCPAVLTHLDEQDSSVVKPMWDAVLLCLLKYNDCWTHVNSRKAVFPGLWKLLKNCGYDNVQFVYPNFLPFITNIPKEVSGDGLGFYNEFFTNFTEGLHS-KEGISQKDADIIIKSLMECIRFLIVKRADETQLVEYISNEQLRPLIHLMFSKDEEPKIWYRAFITEMKSLLSFLAAQSSNTQTESSEY-FKSVEQKLWSIVTDVIV 1499
K QRTKGN +PS+S RAA L +E GFIGF G ++LGYVP ++G EE + D +M++RK++KKD TKLKA QEF +C +D E + +L +WPRI+ K+S D D RVREATQQ +L+ K K+LAP+LK ++ WLM+ D Y P+A AK AF+ AF K+ + FCK EI + + ++ E+PDTLSDP+ VP EEREAKF R ++ S ++ LL LP+N+ ++ + F +LLSQ KFWK+ KH P IR++++ ++ CQ L E S++ P+VL +D+ D V +W+AVL L DCW HVN++K+VFP L +++ G +YP LPFI+ +P+ ++ L F+ F T+ GL + + S ++ +I + EC+RF++ + E ++ + + N+QL P I + ++P + + + LS A++ + E + + ++V W ++++ V
Sbjct: 3 GKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGF-GTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLVAGLSTERTKTSSLESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVL---KDPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICV 499 HSP 2 Score: 274.633 bits (701), Expect = 2.977e-74 Identity = 175/576 (30.38%), Postives = 289/576 (50.17%), Query Frame = 3
Query: 3270 ALRVAVVDLFIVSMTMSSVQFSQDHWDFILCTLVSWLKNCEDEEDFTMVKKRSLFATKSLELFYMVASLFXXXXXXXXXXXXXVGLCDVTFSSLGD-NNQLKTEWDEFFGPTVNASVL-VIFKKSLESGGLQHEDELTKVICACCKFLQEVNNESI--------------EELTSMIQNG-----------SWCYKLAGFQLLSKNITKLEEMCFDLEQ-----DENHEEQRSFPKDLLAIMEVNRDTTVNSLTNQCASI-----IEPANEIEDTESRGGKTSLLAYLLSWQLILQIFQTSSLDQRAKLANFLHRGRHVTDLATCLFCIMPKQT------------ENKAIDTRVYDSSFKE-------IQKIGIKLLINAMQCIPALLRHWFKNNINRNETIHIDKFVSSVVSPHLLRNEFRRLDNAFKTFDNMVVKTRPGAREIVAVYSIEEISMELVVKLSLNHPLTPVVVDCGKRIGVSNALWRQWMLQLTTFLSFQNGTILDGLTLWKRNVDKRFEGVEECMICFSIIHGTNYSLPTIGCKTCKKKFHPACLYKWFSTSGKSTCPLCRNTF 4829
+ + ++ + + S ++ WDFI+C++++WL+ + + + LFA S +L +++ F T ++G+ L +EW EFF +++ +L ++ + E+ + ++ C+ L ++ E + L +Q + ++A + +L K + +L + +D + DE E S P L++++ + D N L C + I+P +E +L YLL+W+LIL F+ +S RA + +L + + + L LF +MP+ + K T S +E I + + ++ +PA++R W+ ++ R I +D+F S VS L E + + + F+ M VK R RE++A Y+IE+I +EL+++L N+PL ++V+ GKR+GV+ WR WMLQL+T+L+ QNG+I++GL LWK NVDKRFEGVE+CMICFS+IHG NYSLP C+TCKKKFH ACLYKWF++S KSTCPLCR TF
Sbjct: 1219 GVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFD----------------STTLDTIGNLPVNLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMPELPQ--YDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLG--CIPVGQIVTIKPLSE--------DFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNI-VDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765 The following BLAST results are available for this feature:
BLAST of TCONS_00072765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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